Wall clock time and date at job start Sat Apr 11 2020 05:41:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.33814 * 124.52225 * 2 1 4 4 C 1.37475 * 115.10326 * 180.02562 * 3 2 1 5 5 C 1.36652 * 113.29531 * 0.02562 * 4 3 2 6 6 C 1.46584 * 125.45815 * 179.97438 * 5 4 3 7 7 O 1.21702 * 119.99955 * 0.02562 * 6 5 4 8 8 N 1.34777 * 119.99934 * 180.02562 * 6 5 4 9 9 C 1.46494 * 120.00241 * 180.02562 * 8 6 5 10 10 H 1.09005 * 109.47356 * 34.99089 * 9 8 6 11 11 C 1.53002 * 109.46686 * 274.99598 * 9 8 6 12 12 C 1.52994 * 109.47469 * 154.99543 * 9 8 6 13 13 H 1.08996 * 109.47441 * 294.99622 * 12 9 8 14 14 C 1.53000 * 109.47192 * 54.99969 * 12 9 8 15 15 N 1.46901 * 109.47033 * 174.99718 * 12 9 8 16 16 C 1.46902 * 111.00236 * 155.00293 * 15 12 9 17 17 C 1.50697 * 109.47648 * 180.02562 * 16 15 12 18 18 O 1.21291 * 119.99492 * 359.97438 * 17 16 15 19 19 N 1.34773 * 120.00185 * 179.97438 * 17 16 15 20 20 C 1.37095 * 120.00033 * 179.97438 * 19 17 16 21 21 H 1.08000 * 120.00003 * 0.02562 * 20 19 17 22 22 C 1.38950 * 120.00263 * 179.97438 * 20 19 17 23 23 N 1.31408 * 120.00147 * 179.97438 * 22 20 19 24 24 Si 1.86797 * 119.99691 * 0.02562 * 22 20 19 25 25 H 1.48502 * 109.47535 * 89.99506 * 24 22 20 26 26 H 1.48498 * 109.47205 * 209.99422 * 24 22 20 27 27 H 1.48503 * 109.47275 * 329.99476 * 24 22 20 28 28 S 1.70613 * 124.52374 * 180.02562 * 2 1 3 29 29 H 1.08998 * 109.47730 * 89.99989 * 1 2 3 30 30 H 1.09000 * 109.47041 * 210.00416 * 1 2 3 31 31 H 1.09002 * 109.47412 * 329.99763 * 1 2 3 32 32 H 1.07999 * 122.45084 * 0.02562 * 3 2 1 33 33 H 1.07998 * 123.35225 * 179.72591 * 4 3 2 34 34 H 0.97008 * 119.99839 * 359.97438 * 8 6 5 35 35 H 1.08999 * 109.47223 * 59.99798 * 11 9 8 36 36 H 1.09004 * 109.47375 * 179.97438 * 11 9 8 37 37 H 1.08993 * 109.47231 * 299.99816 * 11 9 8 38 38 H 1.08996 * 109.46871 * 299.99747 * 14 12 9 39 39 H 1.08998 * 109.46858 * 59.99896 * 14 12 9 40 40 H 1.08999 * 109.47196 * 180.02562 * 14 12 9 41 41 H 1.00908 * 111.00300 * 278.95273 * 15 12 9 42 42 H 1.09005 * 109.46445 * 300.00231 * 16 15 12 43 43 H 1.09000 * 109.47239 * 59.99139 * 16 15 12 44 44 H 0.96998 * 119.99879 * 0.02562 * 19 17 16 45 45 H 0.97008 * 120.00012 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2653 1.1025 0.0000 4 6 3.6215 0.8775 -0.0006 5 6 3.9492 -0.4491 -0.0016 6 6 5.3123 -0.9883 -0.0029 7 8 6.2658 -0.2320 -0.0027 8 7 5.5096 -2.3216 -0.0043 9 6 6.8718 -2.8605 -0.0051 10 1 7.5195 -2.2119 0.5849 11 6 7.3920 -2.9297 -1.4423 12 6 6.8653 -4.2643 0.6031 13 1 6.5797 -4.2040 1.6533 14 6 5.8619 -5.1412 -0.1487 15 7 8.2073 -4.8516 0.4936 16 6 8.4210 -5.8731 1.5275 17 6 9.8053 -6.4513 1.3841 18 8 10.5413 -6.0519 0.5066 19 7 10.2254 -7.4119 2.2309 20 6 11.4845 -7.9382 2.1001 21 1 12.1399 -7.5827 1.3188 22 6 11.9179 -8.9282 2.9734 23 7 13.1246 -9.4330 2.8478 24 14 10.7846 -9.5426 4.3253 25 1 9.9847 -10.6867 3.8188 26 1 11.5953 -9.9822 5.4892 27 1 9.8727 -8.4473 4.7426 28 16 2.4739 -1.4057 -0.0006 29 1 -0.3634 0.0000 -1.0276 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3634 0.8900 0.5139 32 1 1.8429 2.0964 0.0004 33 1 4.3549 1.6703 -0.0049 34 1 4.7495 -2.9243 -0.0041 35 1 7.3967 -1.9296 -1.8756 36 1 8.4058 -3.3303 -1.4429 37 1 6.7444 -3.5782 -2.0322 38 1 4.8662 -4.7054 -0.0674 39 1 6.1476 -5.2015 -1.1989 40 1 5.8570 -6.1412 0.2849 41 1 8.3613 -5.2324 -0.4281 42 1 8.3173 -5.4195 2.5132 43 1 7.6819 -6.6661 1.4130 44 1 9.6366 -7.7314 2.9324 45 1 13.4271 -10.1245 3.4572 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485116250.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:32 Heat of formation + Delta-G solvation = -64.259024 kcal Electronic energy + Delta-G solvation = -26116.908094 eV Core-core repulsion = 22259.964699 eV Total energy + Delta-G solvation = -3856.943395 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.15911 -40.32196 -39.07291 -38.30706 -36.09529 -35.43928 -33.74658 -33.18250 -32.02950 -30.15219 -28.31090 -27.98633 -25.94735 -25.23997 -24.35672 -22.63140 -21.31419 -21.00188 -20.42931 -20.09242 -19.07358 -17.76842 -17.31707 -17.00979 -16.85210 -16.54037 -16.27423 -16.21807 -15.68453 -15.35087 -15.09922 -14.89462 -14.78071 -14.76222 -14.45562 -14.03613 -13.94126 -13.90111 -13.39387 -13.32501 -13.18227 -13.09739 -12.93557 -12.89992 -12.73014 -12.58548 -12.40642 -11.98920 -11.94514 -11.88485 -11.84638 -11.49979 -11.22874 -10.45728 -10.28170 -10.23941 -9.63011 -9.54403 -9.32162 -8.40343 -6.01363 -0.53716 0.44028 0.85884 1.31137 1.36408 1.36593 1.45641 1.94361 1.97286 2.13587 2.24085 2.78050 3.16285 3.43575 3.67395 3.79983 3.85680 3.91230 4.15413 4.20076 4.26415 4.39175 4.41948 4.43501 4.50696 4.59868 4.68905 4.69809 4.74448 4.82515 4.94396 4.97150 5.07515 5.09404 5.18426 5.21931 5.38366 5.40533 5.41420 5.53783 5.90753 6.03647 6.37735 6.39091 6.60705 6.89290 7.07212 7.40936 7.97990 8.77349 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.024510 B = 0.001886 C = 0.001817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.138461 B =14839.587948 C =15410.144992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C -0.186 4.186 3 C -0.169 4.169 4 C -0.055 4.055 5 C -0.306 4.306 6 C 0.587 3.413 7 O -0.575 6.575 8 N -0.707 5.707 9 C 0.159 3.841 10 H 0.067 0.933 11 C -0.157 4.157 12 C 0.085 3.915 13 H 0.096 0.904 14 C -0.187 4.187 15 N -0.679 5.679 16 C 0.064 3.936 17 C 0.448 3.552 18 O -0.614 6.614 19 N -0.590 5.590 20 C -0.329 4.329 21 H 0.054 0.946 22 C -0.017 4.017 23 N -0.935 5.935 24 Si 0.966 3.034 25 H -0.255 1.255 26 H -0.277 1.277 27 H -0.231 1.231 28 S 0.238 5.762 29 H 0.091 0.909 30 H 0.082 0.918 31 H 0.092 0.908 32 H 0.164 0.836 33 H 0.144 0.856 34 H 0.408 0.592 35 H 0.041 0.959 36 H 0.066 0.934 37 H 0.074 0.926 38 H 0.080 0.920 39 H 0.066 0.934 40 H 0.071 0.929 41 H 0.350 0.650 42 H 0.112 0.888 43 H 0.085 0.915 44 H 0.390 0.610 45 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -35.571 14.919 -2.861 38.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.306 4.306 3 C -0.198 4.198 4 C -0.090 4.090 5 C -0.426 4.426 6 C 0.375 3.625 7 O -0.457 6.457 8 N -0.360 5.360 9 C 0.054 3.946 10 H 0.085 0.915 11 C -0.216 4.216 12 C -0.026 4.026 13 H 0.114 0.886 14 C -0.245 4.245 15 N -0.312 5.312 16 C -0.068 4.068 17 C 0.236 3.764 18 O -0.499 6.499 19 N -0.232 5.232 20 C -0.458 4.458 21 H 0.072 0.928 22 C -0.215 4.215 23 N -0.576 5.576 24 Si 0.786 3.214 25 H -0.179 1.179 26 H -0.202 1.202 27 H -0.154 1.154 28 S 0.506 5.494 29 H 0.110 0.890 30 H 0.101 0.899 31 H 0.111 0.889 32 H 0.182 0.818 33 H 0.161 0.839 34 H 0.246 0.754 35 H 0.060 0.940 36 H 0.085 0.915 37 H 0.093 0.907 38 H 0.099 0.901 39 H 0.085 0.915 40 H 0.090 0.910 41 H 0.170 0.830 42 H 0.130 0.870 43 H 0.103 0.897 44 H 0.226 0.774 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -34.240 14.483 -3.024 37.299 hybrid contribution 0.192 0.258 0.245 0.404 sum -34.048 14.741 -2.779 37.206 Atomic orbital electron populations 1.20575 0.85057 1.04836 1.04321 1.24725 1.03103 0.97299 1.05516 1.20137 0.91658 1.01042 1.06997 1.20940 0.97269 0.95018 0.95735 1.24498 0.96998 0.99161 1.21931 1.17314 0.87289 0.82495 0.75389 1.90824 1.43559 1.59121 1.52146 1.45888 1.09439 1.05822 1.74833 1.20733 0.82017 0.94561 0.97319 0.91476 1.22103 1.02146 1.01482 0.95823 1.21701 0.87582 0.92309 1.00984 0.88593 1.22590 0.99815 1.00658 1.01460 1.59925 1.27630 1.35974 1.07717 1.21656 0.91894 0.95057 0.98226 1.21018 0.90825 0.81407 0.83195 1.90554 1.58826 1.63036 1.37441 1.42013 1.14164 1.36255 1.30805 1.19006 0.91319 1.19349 1.16172 0.92801 1.26143 0.98215 0.96239 1.00908 1.69812 1.19595 1.28452 1.39722 0.85346 0.78617 0.80089 0.77336 1.17927 1.20221 1.15393 1.82664 0.92146 1.07059 1.67558 0.89047 0.89879 0.88908 0.81820 0.83863 0.75379 0.94019 0.91465 0.90668 0.90127 0.91515 0.91027 0.82964 0.86992 0.89720 0.77427 0.91183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.32 10.31 71.23 0.73 0.42 16 2 C -0.19 -1.82 6.28 24.68 0.15 -1.67 16 3 C -0.17 -2.04 9.99 21.08 0.21 -1.83 16 4 C -0.06 -0.98 10.01 21.72 0.22 -0.77 16 5 C -0.31 -5.79 6.45 24.08 0.16 -5.64 16 6 C 0.59 14.44 7.75 86.42 0.67 15.11 16 7 O -0.58 -19.34 16.50 -4.35 -0.07 -19.42 16 8 N -0.71 -13.58 4.98 -446.60 -2.23 -15.81 16 9 C 0.16 3.66 2.63 44.99 0.12 3.77 16 10 H 0.07 2.01 7.58 -2.38 -0.02 1.99 16 11 C -0.16 -3.75 8.86 71.98 0.64 -3.11 16 12 C 0.08 1.66 2.64 44.91 0.12 1.78 16 13 H 0.10 1.68 7.80 -2.39 -0.02 1.67 16 14 C -0.19 -2.52 8.68 71.98 0.62 -1.89 16 15 N -0.68 -18.94 5.23 -495.58 -2.59 -21.53 16 16 C 0.06 1.84 5.96 85.56 0.51 2.35 16 17 C 0.45 19.91 7.82 87.66 0.69 20.59 16 18 O -0.61 -33.98 15.78 -3.07 -0.05 -34.03 16 19 N -0.59 -27.55 5.09 -306.99 -1.56 -29.11 16 20 C -0.33 -19.32 10.16 84.04 0.85 -18.47 16 21 H 0.05 3.78 7.39 -2.91 -0.02 3.76 16 22 C -0.02 -0.92 5.50 84.93 0.47 -0.45 16 23 N -0.94 -56.61 13.96 21.66 0.30 -56.30 16 24 Si 0.97 38.47 27.74 68.60 1.90 40.37 16 25 H -0.25 -9.50 7.11 99.48 0.71 -8.80 16 26 H -0.28 -11.04 7.11 99.48 0.71 -10.33 16 27 H -0.23 -7.68 6.52 99.48 0.65 -7.03 16 28 S 0.24 2.58 22.10 -56.49 -1.25 1.33 16 29 H 0.09 0.17 8.14 -2.39 -0.02 0.15 16 30 H 0.08 0.15 8.14 -2.39 -0.02 0.13 16 31 H 0.09 0.15 8.14 -2.39 -0.02 0.13 16 32 H 0.16 1.24 8.06 -2.91 -0.02 1.21 16 33 H 0.14 2.69 8.06 -2.91 -0.02 2.67 16 34 H 0.41 5.30 5.69 -92.70 -0.53 4.78 16 35 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.07 1.83 7.13 -2.38 -0.02 1.81 16 37 H 0.07 1.43 6.56 -2.39 -0.02 1.42 16 38 H 0.08 0.70 6.29 -2.39 -0.02 0.68 16 39 H 0.07 0.95 6.55 -2.39 -0.02 0.94 16 40 H 0.07 0.91 7.45 -2.39 -0.02 0.89 16 41 H 0.35 10.35 7.39 -89.69 -0.66 9.69 16 42 H 0.11 2.77 8.06 -2.38 -0.02 2.75 16 43 H 0.09 1.86 7.44 -2.39 -0.02 1.84 16 44 H 0.39 14.88 5.76 -92.71 -0.53 14.35 16 45 H 0.28 15.40 8.31 -92.70 -0.77 14.63 16 Total: -1.00 -83.76 383.24 -0.12 -83.88 By element: Atomic # 1 Polarization: 41.16 SS G_CDS: -0.73 Total: 40.42 kcal Atomic # 6 Polarization: 4.03 SS G_CDS: 6.16 Total: 10.19 kcal Atomic # 7 Polarization: -116.67 SS G_CDS: -6.08 Total: -122.75 kcal Atomic # 8 Polarization: -53.32 SS G_CDS: -0.12 Total: -53.44 kcal Atomic # 14 Polarization: 38.47 SS G_CDS: 1.90 Total: 40.37 kcal Atomic # 16 Polarization: 2.58 SS G_CDS: -1.25 Total: 1.33 kcal Total: -83.76 -0.12 -83.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485116250.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.623 kcal (2) G-P(sol) polarization free energy of solvation -83.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds