Wall clock time and date at job start Sat Apr 11 2020 05:38:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.33820 * 124.52364 * 2 1 4 4 C 1.37467 * 115.10079 * 179.72539 * 3 2 1 5 5 C 1.36649 * 113.29657 * 0.45225 * 4 3 2 6 6 C 1.46586 * 125.45678 * 179.84155 * 5 4 3 7 7 O 1.21700 * 120.00013 * 359.43522 * 6 5 4 8 8 N 1.34777 * 119.99915 * 179.71828 * 6 5 4 9 9 C 1.46496 * 119.99867 * 180.02562 * 8 6 5 10 10 C 1.53002 * 109.47030 * 179.97438 * 9 8 6 11 11 C 1.53006 * 109.47348 * 179.97438 * 10 9 8 12 12 H 1.08995 * 109.46650 * 305.00526 * 11 10 9 13 13 C 1.52997 * 109.47019 * 184.99755 * 11 10 9 14 14 N 1.46901 * 109.46958 * 64.99821 * 11 10 9 15 15 C 1.46894 * 110.99929 * 205.00397 * 14 11 10 16 16 C 1.50703 * 109.47423 * 180.02562 * 15 14 11 17 17 O 1.21302 * 119.99633 * 359.97438 * 16 15 14 18 18 N 1.34772 * 120.00713 * 179.97438 * 16 15 14 19 19 C 1.37095 * 120.00673 * 179.97438 * 18 16 15 20 20 H 1.08000 * 119.99534 * 0.02562 * 19 18 16 21 21 C 1.38941 * 120.00500 * 179.97438 * 19 18 16 22 22 N 1.31421 * 119.99813 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 120.00380 * 180.02562 * 21 19 18 24 24 H 1.48493 * 109.47303 * 59.99765 * 23 21 19 25 25 H 1.48502 * 109.47320 * 180.02562 * 23 21 19 26 26 H 1.48502 * 109.47250 * 300.00101 * 23 21 19 27 27 S 1.70612 * 124.52306 * 179.97438 * 2 1 3 28 28 H 1.08994 * 109.47019 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.46892 * 300.00421 * 1 2 3 30 30 H 1.09005 * 109.46665 * 60.00341 * 1 2 3 31 31 H 1.07999 * 122.44459 * 359.96761 * 3 2 1 32 32 H 1.08005 * 123.35514 * 180.26805 * 4 3 2 33 33 H 0.96999 * 120.00047 * 359.97438 * 8 6 5 34 34 H 1.09004 * 109.47074 * 299.99559 * 9 8 6 35 35 H 1.09004 * 109.47714 * 59.99650 * 9 8 6 36 36 H 1.09004 * 109.46930 * 299.99768 * 10 9 8 37 37 H 1.09000 * 109.47312 * 59.99824 * 10 9 8 38 38 H 1.08991 * 109.47057 * 60.00614 * 13 11 10 39 39 H 1.09002 * 109.46731 * 180.02562 * 13 11 10 40 40 H 1.09000 * 109.47175 * 299.99937 * 13 11 10 41 41 H 1.00907 * 111.00182 * 328.95651 * 14 11 10 42 42 H 1.09005 * 109.47183 * 299.99583 * 15 14 11 43 43 H 1.08993 * 109.47482 * 59.99966 * 15 14 11 44 44 H 0.97007 * 119.99681 * 359.97438 * 18 16 15 45 45 H 0.96998 * 119.99963 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2655 1.1025 0.0000 4 6 3.6216 0.8775 0.0060 5 6 3.9493 -0.4491 0.0010 6 6 5.3124 -0.9883 0.0021 7 8 6.2659 -0.2321 -0.0026 8 7 5.5097 -2.3216 0.0024 9 6 6.8719 -2.8604 0.0041 10 6 6.8155 -4.3894 0.0048 11 6 8.2383 -4.9523 0.0059 12 1 8.7934 -4.5381 -0.8357 13 6 8.1840 -6.4762 -0.1190 14 7 8.9082 -4.5874 1.2614 15 6 10.3671 -4.5624 1.0916 16 6 11.0185 -4.1858 2.3973 17 8 10.3345 -3.9599 3.3733 18 7 12.3609 -4.0999 2.4808 19 6 12.9534 -3.7568 3.6685 20 1 12.3444 -3.5557 4.5375 21 6 14.3374 -3.6687 3.7547 22 7 15.0784 -3.9139 2.6974 23 14 15.1447 -3.2019 5.3731 24 1 14.7833 -4.1992 6.4123 25 1 16.6196 -3.1772 5.2017 26 1 14.6730 -1.8575 5.7920 27 16 2.4740 -1.4057 0.0006 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 1.8429 2.0964 -0.0005 32 1 4.3551 1.6702 0.0109 33 1 4.7497 -2.9243 0.0023 34 1 7.3998 -2.5164 -0.8854 35 1 7.3978 -2.5161 0.8946 36 1 6.2878 -4.7331 0.8945 37 1 6.2896 -4.7340 -0.8855 38 1 7.6870 -6.7468 -1.0505 39 1 9.1975 -6.8771 -0.1177 40 1 7.6288 -6.8902 0.7227 41 1 8.5693 -3.7025 1.6082 42 1 10.7141 -5.5489 0.7842 43 1 10.6316 -3.8302 0.3288 44 1 12.9079 -4.2808 1.7004 45 1 16.0446 -3.8521 2.7574 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001491972196.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:14 Heat of formation + Delta-G solvation = -51.482401 kcal Electronic energy + Delta-G solvation = -25625.514838 eV Core-core repulsion = 21769.125479 eV Total energy + Delta-G solvation = -3856.389359 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.00515 -38.52630 -38.11056 -37.10483 -34.86015 -33.85580 -32.55757 -31.55947 -31.05534 -29.37590 -27.44686 -26.35125 -24.37821 -23.88471 -23.16861 -21.57832 -20.51379 -19.52539 -19.18642 -18.24613 -17.84117 -16.65963 -16.34647 -16.04309 -15.73606 -15.39242 -15.10698 -14.99855 -14.50680 -14.39750 -14.02413 -13.89615 -13.62789 -13.57017 -13.50684 -13.10749 -12.79779 -12.48815 -12.44664 -12.24507 -12.15783 -11.84699 -11.68079 -11.55268 -11.38440 -11.29274 -11.22733 -11.01360 -10.77046 -10.40649 -10.25855 -10.16913 -9.45668 -9.39950 -9.02022 -8.97854 -8.40268 -8.03932 -7.91366 -6.37312 -3.77980 0.12321 1.03734 1.44058 2.02345 2.84016 2.97416 3.23771 3.28879 3.33694 3.95696 4.12351 4.28563 4.35008 4.47377 4.63238 4.68577 4.86062 4.92230 4.93899 4.97885 5.14982 5.17416 5.29272 5.39167 5.39695 5.41009 5.52969 5.60957 5.71186 5.76221 5.81749 5.84768 5.90790 5.97594 6.02901 6.07362 6.13019 6.28231 6.37996 7.16103 7.26939 7.59321 7.69163 7.91289 8.10707 8.65992 9.22283 9.58974 10.10700 10.80401 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.016258 B = 0.001868 C = 0.001735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1721.813037 B =14984.548158 C =16130.271870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C -0.194 4.194 3 C -0.157 4.157 4 C -0.049 4.049 5 C -0.269 4.269 6 C 0.588 3.412 7 O -0.524 6.524 8 N -0.724 5.724 9 C 0.113 3.887 10 C -0.133 4.133 11 C 0.086 3.914 12 H 0.045 0.955 13 C -0.139 4.139 14 N -0.666 5.666 15 C 0.050 3.950 16 C 0.441 3.559 17 O -0.583 6.583 18 N -0.564 5.564 19 C -0.299 4.299 20 H 0.102 0.898 21 C 0.022 3.978 22 N -0.902 5.902 23 Si 0.931 3.069 24 H -0.274 1.274 25 H -0.285 1.285 26 H -0.274 1.274 27 S 0.197 5.803 28 H 0.069 0.931 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.145 0.855 32 H 0.154 0.846 33 H 0.397 0.603 34 H 0.071 0.929 35 H 0.076 0.924 36 H 0.082 0.918 37 H 0.076 0.924 38 H 0.052 0.948 39 H 0.057 0.943 40 H 0.063 0.937 41 H 0.349 0.651 42 H 0.086 0.914 43 H 0.044 0.956 44 H 0.392 0.608 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.341 2.815 -12.147 30.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.313 4.313 3 C -0.188 4.188 4 C -0.082 4.082 5 C -0.389 4.389 6 C 0.374 3.626 7 O -0.401 6.401 8 N -0.376 5.376 9 C -0.010 4.010 10 C -0.171 4.171 11 C -0.024 4.024 12 H 0.063 0.937 13 C -0.197 4.197 14 N -0.301 5.301 15 C -0.083 4.083 16 C 0.226 3.774 17 O -0.467 6.467 18 N -0.200 5.200 19 C -0.429 4.429 20 H 0.120 0.880 21 C -0.180 4.180 22 N -0.544 5.544 23 Si 0.758 3.242 24 H -0.199 1.199 25 H -0.210 1.210 26 H -0.199 1.199 27 S 0.464 5.536 28 H 0.088 0.912 29 H 0.099 0.901 30 H 0.098 0.902 31 H 0.163 0.837 32 H 0.172 0.828 33 H 0.231 0.769 34 H 0.089 0.911 35 H 0.094 0.906 36 H 0.101 0.899 37 H 0.094 0.906 38 H 0.071 0.929 39 H 0.076 0.924 40 H 0.082 0.918 41 H 0.171 0.829 42 H 0.104 0.896 43 H 0.062 0.938 44 H 0.225 0.775 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -28.192 1.313 -11.257 30.385 hybrid contribution 0.922 2.238 -0.222 2.431 sum -27.270 3.551 -11.479 29.800 Atomic orbital electron populations 1.20404 0.87305 1.03232 1.03486 1.24256 1.01576 0.97691 1.07825 1.19962 0.92612 0.99748 1.06456 1.20795 0.96250 0.95273 0.95901 1.24574 0.96743 0.98152 1.19425 1.16957 0.86839 0.82267 0.76537 1.90876 1.41792 1.57942 1.49506 1.45819 1.09512 1.06242 1.76016 1.21541 0.82587 0.93761 1.03111 1.21999 0.98285 0.93278 1.03574 1.21452 0.92780 0.96510 0.91688 0.93662 1.21782 1.02338 0.94465 1.01100 1.60209 1.03748 1.39220 1.26938 1.21723 0.88541 1.01434 0.96580 1.19822 0.83107 0.84689 0.89756 1.90524 1.62867 1.55033 1.38320 1.41851 1.04663 1.60635 1.12893 1.19655 0.90009 1.43254 0.89945 0.87995 1.25256 0.96277 0.97538 0.98891 1.69609 1.06166 1.49450 1.29149 0.85914 0.77575 0.79265 0.81440 1.19914 1.20999 1.19928 1.82908 0.94355 1.07846 1.68450 0.91211 0.90111 0.90153 0.83710 0.82822 0.76887 0.91086 0.90564 0.89943 0.90557 0.92873 0.92360 0.91834 0.82936 0.89574 0.93820 0.77468 0.91868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.34 10.33 36.01 0.37 0.03 16 2 C -0.19 -1.31 6.28 -35.86 -0.23 -1.53 16 3 C -0.16 -1.18 10.00 -41.41 -0.41 -1.59 16 4 C -0.05 -0.48 10.01 -40.44 -0.40 -0.88 16 5 C -0.27 -2.80 6.45 -36.79 -0.24 -3.04 16 6 C 0.59 7.61 7.78 -12.89 -0.10 7.51 16 7 O -0.52 -8.92 16.84 5.19 0.09 -8.84 16 8 N -0.72 -7.56 5.55 -61.65 -0.34 -7.90 16 9 C 0.11 1.29 5.50 -4.04 -0.02 1.26 16 10 C -0.13 -1.26 4.92 -26.73 -0.13 -1.39 16 11 C 0.09 1.02 2.65 -67.71 -0.18 0.84 16 12 H 0.05 0.52 7.80 -51.93 -0.40 0.12 16 13 C -0.14 -1.50 9.42 37.16 0.35 -1.15 16 14 N -0.67 -10.82 5.93 -108.00 -0.64 -11.46 16 15 C 0.05 0.90 5.96 -4.98 -0.03 0.87 16 16 C 0.44 10.72 7.82 -10.99 -0.09 10.64 16 17 O -0.58 -16.29 15.78 5.54 0.09 -16.21 16 18 N -0.56 -14.68 5.29 -10.96 -0.06 -14.74 16 19 C -0.30 -8.55 9.68 -14.94 -0.14 -8.70 16 20 H 0.10 3.05 7.16 -52.49 -0.38 2.68 16 21 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 22 N -0.90 -25.00 13.05 55.50 0.72 -24.28 16 23 Si 0.93 21.55 29.55 -169.99 -5.02 16.52 16 24 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 25 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 26 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 27 S 0.20 1.40 22.08 -107.50 -2.37 -0.98 16 28 H 0.07 0.22 8.11 -51.93 -0.42 -0.20 16 29 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.15 0.79 8.06 -52.49 -0.42 0.36 16 32 H 0.15 1.48 8.06 -52.48 -0.42 1.06 16 33 H 0.40 3.04 7.59 -40.82 -0.31 2.73 16 34 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.08 1.05 6.43 -51.93 -0.33 0.72 16 36 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 38 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.06 0.68 7.45 -51.93 -0.39 0.30 16 40 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.35 6.01 6.17 -39.29 -0.24 5.76 16 42 H 0.09 1.44 7.44 -51.93 -0.39 1.05 16 43 H 0.04 0.73 8.05 -51.93 -0.42 0.31 16 44 H 0.39 9.74 7.90 -40.82 -0.32 9.42 16 45 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 LS Contribution 393.21 15.07 5.93 5.93 Total: -1.00 -34.87 393.21 -9.50 -44.38 By element: Atomic # 1 Polarization: 20.73 SS G_CDS: -6.54 Total: 14.19 kcal Atomic # 6 Polarization: 4.72 SS G_CDS: -1.35 Total: 3.37 kcal Atomic # 7 Polarization: -58.05 SS G_CDS: -0.32 Total: -58.37 kcal Atomic # 8 Polarization: -25.22 SS G_CDS: 0.17 Total: -25.04 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.52 kcal Atomic # 16 Polarization: 1.40 SS G_CDS: -2.37 Total: -0.98 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -34.87 -9.50 -44.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491972196.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.106 kcal (2) G-P(sol) polarization free energy of solvation -34.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds