Wall clock time and date at job start Sat Apr 11 2020 05:38:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.34659 * 125.80848 * 2 1 4 4 H 0.96996 * 124.84608 * 0.02562 * 3 2 1 5 5 C 1.36445 * 110.30153 * 180.29938 * 3 2 1 6 6 C 1.34493 * 108.85357 * 359.74375 * 5 3 2 7 7 C 1.36773 * 125.79783 * 179.86834 * 2 1 3 8 8 C 1.47266 * 126.94293 * 359.97438 * 7 2 1 9 9 O 1.21631 * 119.99878 * 359.70894 * 8 7 2 10 10 N 1.34773 * 119.99956 * 179.71314 * 8 7 2 11 11 C 1.46506 * 119.99969 * 180.02562 * 10 8 7 12 12 C 1.52998 * 109.47237 * 179.72043 * 11 10 8 13 13 C 1.52996 * 109.46929 * 179.97438 * 12 11 10 14 14 H 1.08990 * 109.47378 * 55.00281 * 13 12 11 15 15 C 1.53006 * 109.46824 * 175.00282 * 13 12 11 16 16 N 1.46501 * 109.47442 * 294.99772 * 13 12 11 17 17 C 1.34778 * 120.00048 * 154.99776 * 16 13 12 18 18 O 1.21278 * 120.00067 * 0.02562 * 17 16 13 19 19 C 1.50700 * 119.99603 * 180.02562 * 17 16 13 20 20 S 1.80999 * 109.46704 * 180.02562 * 19 17 16 21 21 C 1.76196 * 100.00265 * 180.02562 * 20 19 17 22 22 H 1.08003 * 119.99671 * 359.97438 * 21 20 19 23 23 C 1.38803 * 120.00425 * 180.02562 * 21 20 19 24 24 N 1.31631 * 119.99630 * 359.97438 * 23 21 20 25 25 Si 1.86794 * 120.00077 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.47294 * 89.99814 * 25 23 21 27 27 H 1.48494 * 109.47489 * 209.99856 * 25 23 21 28 28 H 1.48504 * 109.47551 * 330.00272 * 25 23 21 29 29 H 1.09006 * 109.46866 * 270.13816 * 1 2 3 30 30 H 1.09008 * 109.46827 * 30.12850 * 1 2 3 31 31 H 1.08990 * 109.47444 * 150.13321 * 1 2 3 32 32 H 1.07999 * 125.57588 * 179.77302 * 5 3 2 33 33 H 1.08002 * 126.83040 * 180.02562 * 6 5 3 34 34 H 0.97005 * 120.00161 * 359.72135 * 10 8 7 35 35 H 1.09001 * 109.46512 * 299.72412 * 11 10 8 36 36 H 1.08998 * 109.47174 * 59.71534 * 11 10 8 37 37 H 1.09000 * 109.46986 * 299.99958 * 12 11 10 38 38 H 1.09002 * 109.46857 * 60.00093 * 12 11 10 39 39 H 1.08998 * 109.46949 * 60.00146 * 15 13 12 40 40 H 1.09002 * 109.46582 * 180.02562 * 15 13 12 41 41 H 1.08995 * 109.46978 * 299.99933 * 15 13 12 42 42 H 0.97003 * 120.00004 * 335.00404 * 16 13 12 43 43 H 1.08992 * 109.47692 * 300.00439 * 19 17 16 44 44 H 1.09000 * 109.47269 * 60.00744 * 19 17 16 45 45 H 0.97001 * 119.99200 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2948 1.0921 0.0000 4 1 1.9735 2.0073 0.0004 5 6 3.6096 0.7273 -0.0067 6 6 3.6881 -0.6154 -0.0054 7 6 2.3070 -1.1093 0.0025 8 6 1.8701 -2.5157 0.0063 9 8 0.6837 -2.7839 0.0128 10 7 2.7847 -3.5055 0.0027 11 6 2.3500 -4.9046 0.0058 12 6 3.5762 -5.8196 -0.0064 13 6 3.1222 -7.2807 -0.0024 14 1 2.4434 -7.4525 -0.8377 15 6 4.3419 -8.1941 -0.1403 16 7 2.4321 -7.5743 1.2561 17 6 1.5289 -8.5731 1.3123 18 8 1.2878 -9.2291 0.3212 19 6 0.8187 -8.8747 2.6068 20 16 -0.3212 -10.2590 2.3611 21 6 -0.9956 -10.3917 3.9835 22 1 -0.6669 -9.7187 4.7616 23 6 -1.9484 -11.3619 4.2618 24 7 -2.3486 -12.1825 3.3136 25 14 -2.6628 -11.5030 5.9820 26 1 -3.8682 -10.6424 6.0896 27 1 -3.0374 -12.9151 6.2482 28 1 -1.6507 -11.0636 6.9760 29 1 -0.3633 0.0025 1.0277 30 1 -0.3633 0.8889 -0.5159 31 1 -0.3634 -0.8911 -0.5117 32 1 4.4499 1.4057 -0.0117 33 1 4.5889 -1.2112 -0.0092 34 1 3.7308 -3.2916 -0.0065 35 1 1.7600 -5.0996 0.9013 36 1 1.7431 -5.0985 -0.8785 37 1 4.1662 -5.6245 -0.9019 38 1 4.1830 -5.6257 0.8780 39 1 5.0207 -8.0222 0.6951 40 1 4.0184 -9.2350 -0.1379 41 1 4.8554 -7.9757 -1.0766 42 1 2.6251 -7.0497 2.0489 43 1 1.5507 -9.1383 3.3700 44 1 0.2595 -7.9958 2.9277 45 1 -3.0147 -12.8603 3.5081 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001495501748.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:18 Heat of formation + Delta-G solvation = -46.484024 kcal Electronic energy + Delta-G solvation = -25701.398545 eV Core-core repulsion = 21845.225932 eV Total energy + Delta-G solvation = -3856.172613 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.59428 -39.57760 -39.03923 -36.49965 -34.52483 -32.38196 -32.02296 -31.82793 -31.32468 -29.22005 -28.39935 -26.69085 -25.43659 -24.16391 -22.19699 -21.51376 -20.99175 -20.27841 -19.66345 -18.06442 -17.76903 -16.52877 -16.32204 -16.19264 -15.74779 -15.52225 -14.92221 -14.81206 -14.75511 -14.19947 -14.10254 -13.83179 -13.63570 -13.43010 -13.38014 -13.16847 -13.03218 -12.87521 -12.79215 -12.59076 -12.07486 -11.93019 -11.86939 -11.63963 -11.43099 -11.03492 -10.99795 -10.97466 -10.71662 -9.95767 -9.76570 -9.32897 -9.31628 -9.12078 -9.02272 -8.83921 -8.53966 -8.17902 -6.44220 -6.17003 -3.86843 1.47024 2.03813 2.69256 3.09184 3.16808 3.21545 3.26112 3.31610 3.36176 3.39510 3.77685 4.25123 4.45021 4.56336 4.57456 4.70489 4.83641 4.84453 4.89011 5.16526 5.18082 5.22210 5.31281 5.32558 5.38334 5.42488 5.45900 5.61109 5.63217 5.71242 5.73488 5.83589 5.92654 5.95854 6.07226 6.20493 6.22817 6.31676 6.37586 6.54215 6.72505 7.02162 7.44567 7.64379 7.77568 8.22574 8.40076 8.68835 9.28356 10.90435 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013009 B = 0.002022 C = 0.001816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2151.854906 B =13843.400571 C =15415.551417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C 0.108 3.892 3 N -0.554 5.554 4 H 0.416 0.584 5 C -0.018 4.018 6 C -0.169 4.169 7 C -0.237 4.237 8 C 0.588 3.412 9 O -0.545 6.545 10 N -0.728 5.728 11 C 0.119 3.881 12 C -0.137 4.137 13 C 0.147 3.853 14 H 0.091 0.909 15 C -0.162 4.162 16 N -0.735 5.735 17 C 0.534 3.466 18 O -0.517 6.517 19 C -0.154 4.154 20 S -0.060 6.060 21 C -0.534 4.534 22 H 0.072 0.928 23 C 0.073 3.927 24 N -0.868 5.868 25 Si 0.919 3.081 26 H -0.277 1.277 27 H -0.282 1.282 28 H -0.272 1.272 29 H 0.079 0.921 30 H 0.063 0.937 31 H 0.103 0.897 32 H 0.169 0.831 33 H 0.144 0.856 34 H 0.398 0.602 35 H 0.072 0.928 36 H 0.070 0.930 37 H 0.083 0.917 38 H 0.074 0.926 39 H 0.055 0.945 40 H 0.066 0.934 41 H 0.062 0.938 42 H 0.397 0.603 43 H 0.089 0.911 44 H 0.089 0.911 45 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.991 28.345 -7.142 33.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.010 4.010 3 N -0.150 5.150 4 H 0.253 0.747 5 C -0.145 4.145 6 C -0.193 4.193 7 C -0.247 4.247 8 C 0.377 3.623 9 O -0.424 6.424 10 N -0.379 5.379 11 C -0.005 4.005 12 C -0.175 4.175 13 C 0.041 3.959 14 H 0.109 0.891 15 C -0.221 4.221 16 N -0.390 5.390 17 C 0.320 3.680 18 O -0.391 6.391 19 C -0.305 4.305 20 S 0.167 5.833 21 C -0.683 4.683 22 H 0.090 0.910 23 C -0.136 4.136 24 N -0.503 5.503 25 Si 0.745 3.255 26 H -0.203 1.203 27 H -0.208 1.208 28 H -0.197 1.197 29 H 0.097 0.903 30 H 0.082 0.918 31 H 0.122 0.878 32 H 0.186 0.814 33 H 0.162 0.838 34 H 0.232 0.768 35 H 0.090 0.910 36 H 0.088 0.912 37 H 0.102 0.898 38 H 0.093 0.907 39 H 0.074 0.926 40 H 0.085 0.915 41 H 0.081 0.919 42 H 0.231 0.769 43 H 0.107 0.893 44 H 0.108 0.892 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 15.606 26.997 -8.852 32.415 hybrid contribution 0.484 1.514 2.682 3.117 sum 16.090 28.511 -6.170 33.314 Atomic orbital electron populations 1.20611 0.86838 1.04345 1.03700 1.20407 0.93849 0.85620 1.01142 1.41625 1.06291 1.08483 1.58560 0.74747 1.21726 0.85697 0.96482 1.10609 1.22017 0.95708 0.93702 1.07912 1.20139 0.93236 0.92084 1.19250 1.17353 0.85335 0.84067 0.75563 1.90783 1.16602 1.84378 1.50643 1.45752 1.09648 1.06017 1.76505 1.21376 0.96678 0.79138 1.03260 1.22100 0.97710 0.94120 1.03596 1.20777 0.94377 0.92365 0.88377 0.89078 1.22172 0.97300 1.01067 1.01551 1.46125 1.43526 1.36632 1.12719 1.20282 0.78317 0.79058 0.90326 1.90695 1.63282 1.48406 1.36728 1.23537 1.03306 1.06435 0.97203 1.85376 1.46264 1.35311 1.16395 1.22873 1.27926 1.21337 0.96135 0.90959 1.24993 0.95709 0.94735 0.98207 1.70024 1.29633 1.18193 1.32457 0.86169 0.79237 0.77511 0.82585 1.20277 1.20794 1.19728 0.90251 0.91820 0.87847 0.81369 0.83787 0.76796 0.90957 0.91184 0.89805 0.90687 0.92566 0.91478 0.91902 0.76921 0.89307 0.89222 0.92233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.77 9.88 36.00 0.36 -0.41 16 2 C 0.11 0.93 7.17 -81.88 -0.59 0.34 16 3 N -0.55 -3.04 5.90 -9.11 -0.05 -3.10 16 4 H 0.42 0.95 8.96 -40.82 -0.37 0.59 16 5 C -0.02 -0.10 11.89 -16.82 -0.20 -0.30 16 6 C -0.17 -1.19 10.56 -37.50 -0.40 -1.58 16 7 C -0.24 -2.36 6.29 -103.35 -0.65 -3.01 16 8 C 0.59 7.14 7.81 -12.59 -0.10 7.04 16 9 O -0.55 -8.64 14.82 5.25 0.08 -8.56 16 10 N -0.73 -6.76 5.55 -61.43 -0.34 -7.10 16 11 C 0.12 1.21 5.56 -4.04 -0.02 1.19 16 12 C -0.14 -1.04 4.87 -26.73 -0.13 -1.17 16 13 C 0.15 1.63 2.57 -67.93 -0.17 1.45 16 14 H 0.09 1.22 7.58 -51.93 -0.39 0.82 16 15 C -0.16 -1.68 9.48 37.16 0.35 -1.33 16 16 N -0.74 -9.69 4.53 -53.81 -0.24 -9.93 16 17 C 0.53 10.04 7.81 -10.98 -0.09 9.95 16 18 O -0.52 -11.78 15.52 5.56 0.09 -11.69 16 19 C -0.15 -3.18 6.16 36.01 0.22 -2.96 16 20 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 21 C -0.53 -15.52 9.50 30.94 0.29 -15.22 16 22 H 0.07 1.99 7.80 -52.48 -0.41 1.58 16 23 C 0.07 2.11 5.49 -17.43 -0.10 2.02 16 24 N -0.87 -26.57 13.22 55.49 0.73 -25.84 16 25 Si 0.92 21.81 29.55 -169.99 -5.02 16.78 16 26 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 27 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 28 H -0.27 -6.28 7.11 56.52 0.40 -5.87 16 29 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.33 8.14 -51.92 -0.42 -0.09 16 31 H 0.10 1.07 6.47 -51.93 -0.34 0.74 16 32 H 0.17 0.36 8.06 -52.49 -0.42 -0.07 16 33 H 0.14 0.67 7.70 -52.49 -0.40 0.27 16 34 H 0.40 2.51 7.60 -40.82 -0.31 2.20 16 35 H 0.07 0.87 7.75 -51.93 -0.40 0.47 16 36 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.40 4.18 8.60 -40.82 -0.35 3.83 16 43 H 0.09 1.69 8.14 -51.92 -0.42 1.26 16 44 H 0.09 1.74 8.14 -51.92 -0.42 1.32 16 45 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 LS Contribution 396.29 15.07 5.97 5.97 Total: -1.00 -38.88 396.29 -8.98 -47.86 By element: Atomic # 1 Polarization: 10.22 SS G_CDS: -6.76 Total: 3.46 kcal Atomic # 6 Polarization: -2.77 SS G_CDS: -1.22 Total: -3.99 kcal Atomic # 7 Polarization: -46.06 SS G_CDS: 0.10 Total: -45.96 kcal Atomic # 8 Polarization: -20.42 SS G_CDS: 0.16 Total: -20.26 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.78 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -38.88 -8.98 -47.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001495501748.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.376 kcal (2) G-P(sol) polarization free energy of solvation -38.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds