Wall clock time and date at job start Sat Apr 11 2020 05:38:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.34659 * 125.80848 * 2 1 4 4 H 0.96996 * 124.84608 * 0.02562 * 3 2 1 5 5 C 1.36445 * 110.30153 * 180.29938 * 3 2 1 6 6 C 1.34493 * 108.85357 * 359.74375 * 5 3 2 7 7 C 1.36773 * 125.79783 * 179.86834 * 2 1 3 8 8 C 1.47266 * 126.94293 * 359.97438 * 7 2 1 9 9 O 1.21631 * 119.99878 * 359.70894 * 8 7 2 10 10 N 1.34773 * 119.99956 * 179.71314 * 8 7 2 11 11 C 1.46506 * 119.99969 * 180.02562 * 10 8 7 12 12 C 1.52998 * 109.47237 * 179.72043 * 11 10 8 13 13 C 1.52996 * 109.46929 * 179.97438 * 12 11 10 14 14 H 1.08990 * 109.47378 * 55.00281 * 13 12 11 15 15 C 1.53006 * 109.46824 * 175.00282 * 13 12 11 16 16 N 1.46501 * 109.47442 * 294.99772 * 13 12 11 17 17 C 1.34778 * 120.00048 * 154.99776 * 16 13 12 18 18 O 1.21278 * 120.00067 * 0.02562 * 17 16 13 19 19 C 1.50700 * 119.99603 * 180.02562 * 17 16 13 20 20 S 1.80999 * 109.46704 * 180.02562 * 19 17 16 21 21 C 1.76196 * 100.00265 * 180.02562 * 20 19 17 22 22 H 1.08003 * 119.99671 * 359.97438 * 21 20 19 23 23 C 1.38803 * 120.00425 * 180.02562 * 21 20 19 24 24 N 1.31631 * 119.99630 * 359.97438 * 23 21 20 25 25 Si 1.86794 * 120.00077 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.47294 * 89.99814 * 25 23 21 27 27 H 1.48494 * 109.47489 * 209.99856 * 25 23 21 28 28 H 1.48504 * 109.47551 * 330.00272 * 25 23 21 29 29 H 1.09006 * 109.46866 * 270.13816 * 1 2 3 30 30 H 1.09008 * 109.46827 * 30.12850 * 1 2 3 31 31 H 1.08990 * 109.47444 * 150.13321 * 1 2 3 32 32 H 1.07999 * 125.57588 * 179.77302 * 5 3 2 33 33 H 1.08002 * 126.83040 * 180.02562 * 6 5 3 34 34 H 0.97005 * 120.00161 * 359.72135 * 10 8 7 35 35 H 1.09001 * 109.46512 * 299.72412 * 11 10 8 36 36 H 1.08998 * 109.47174 * 59.71534 * 11 10 8 37 37 H 1.09000 * 109.46986 * 299.99958 * 12 11 10 38 38 H 1.09002 * 109.46857 * 60.00093 * 12 11 10 39 39 H 1.08998 * 109.46949 * 60.00146 * 15 13 12 40 40 H 1.09002 * 109.46582 * 180.02562 * 15 13 12 41 41 H 1.08995 * 109.46978 * 299.99933 * 15 13 12 42 42 H 0.97003 * 120.00004 * 335.00404 * 16 13 12 43 43 H 1.08992 * 109.47692 * 300.00439 * 19 17 16 44 44 H 1.09000 * 109.47269 * 60.00744 * 19 17 16 45 45 H 0.97001 * 119.99200 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2948 1.0921 0.0000 4 1 1.9735 2.0073 0.0004 5 6 3.6096 0.7273 -0.0067 6 6 3.6881 -0.6154 -0.0054 7 6 2.3070 -1.1093 0.0025 8 6 1.8701 -2.5157 0.0063 9 8 0.6837 -2.7839 0.0128 10 7 2.7847 -3.5055 0.0027 11 6 2.3500 -4.9046 0.0058 12 6 3.5762 -5.8196 -0.0064 13 6 3.1222 -7.2807 -0.0024 14 1 2.4434 -7.4525 -0.8377 15 6 4.3419 -8.1941 -0.1403 16 7 2.4321 -7.5743 1.2561 17 6 1.5289 -8.5731 1.3123 18 8 1.2878 -9.2291 0.3212 19 6 0.8187 -8.8747 2.6068 20 16 -0.3212 -10.2590 2.3611 21 6 -0.9956 -10.3917 3.9835 22 1 -0.6669 -9.7187 4.7616 23 6 -1.9484 -11.3619 4.2618 24 7 -2.3486 -12.1825 3.3136 25 14 -2.6628 -11.5030 5.9820 26 1 -3.8682 -10.6424 6.0896 27 1 -3.0374 -12.9151 6.2482 28 1 -1.6507 -11.0636 6.9760 29 1 -0.3633 0.0025 1.0277 30 1 -0.3633 0.8889 -0.5159 31 1 -0.3634 -0.8911 -0.5117 32 1 4.4499 1.4057 -0.0117 33 1 4.5889 -1.2112 -0.0092 34 1 3.7308 -3.2916 -0.0065 35 1 1.7600 -5.0996 0.9013 36 1 1.7431 -5.0985 -0.8785 37 1 4.1662 -5.6245 -0.9019 38 1 4.1830 -5.6257 0.8780 39 1 5.0207 -8.0222 0.6951 40 1 4.0184 -9.2350 -0.1379 41 1 4.8554 -7.9757 -1.0766 42 1 2.6251 -7.0497 2.0489 43 1 1.5507 -9.1383 3.3700 44 1 0.2595 -7.9958 2.9277 45 1 -3.0147 -12.8603 3.5081 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001495501748.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:17 Heat of formation + Delta-G solvation = -76.288794 kcal Electronic energy + Delta-G solvation = -25702.690977 eV Core-core repulsion = 21845.225932 eV Total energy + Delta-G solvation = -3857.465045 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.13199 -40.83340 -40.04464 -37.61239 -35.55004 -34.58755 -33.10759 -32.44007 -32.07214 -30.32093 -29.60148 -27.66101 -27.27076 -24.96717 -22.99448 -22.53232 -21.58939 -21.47128 -20.47640 -19.80675 -18.57236 -17.93347 -17.38169 -16.98510 -16.88407 -16.72223 -16.46531 -16.33098 -15.94208 -15.46480 -14.90851 -14.80731 -14.71865 -14.45273 -14.35103 -14.24724 -14.00521 -13.91492 -13.59044 -13.43401 -13.28733 -13.16927 -13.00116 -12.89359 -12.59720 -12.51067 -12.39321 -12.34256 -11.89087 -11.71907 -11.14664 -10.92684 -10.87282 -10.27937 -10.18934 -10.05658 -9.69976 -9.09006 -8.66608 -8.34846 -6.12780 0.75812 1.27096 1.41987 1.46850 1.57647 1.58320 1.64790 2.13458 2.26434 2.33300 2.56771 2.59335 2.98974 3.32585 3.77131 3.85356 3.93016 4.03036 4.09393 4.14246 4.29231 4.29470 4.35469 4.45883 4.50446 4.52645 4.65039 4.68496 4.70948 4.84253 4.91926 4.99091 5.05198 5.08466 5.16143 5.29980 5.35523 5.41330 5.52871 5.58388 5.83174 6.00748 6.19562 6.53887 6.62875 6.75283 7.06150 7.28866 7.40127 8.74452 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013009 B = 0.002022 C = 0.001816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2151.854906 B =13843.400571 C =15415.551417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.092 3.908 3 N -0.540 5.540 4 H 0.432 0.568 5 C -0.005 4.005 6 C -0.182 4.182 7 C -0.270 4.270 8 C 0.577 3.423 9 O -0.597 6.597 10 N -0.711 5.711 11 C 0.121 3.879 12 C -0.117 4.117 13 C 0.142 3.858 14 H 0.063 0.937 15 C -0.156 4.156 16 N -0.710 5.710 17 C 0.535 3.465 18 O -0.565 6.565 19 C -0.131 4.131 20 S -0.151 6.151 21 C -0.547 4.547 22 H 0.082 0.918 23 C 0.012 3.988 24 N -0.911 5.911 25 Si 1.000 3.000 26 H -0.269 1.269 27 H -0.276 1.276 28 H -0.258 1.258 29 H 0.076 0.924 30 H 0.090 0.910 31 H 0.071 0.929 32 H 0.208 0.792 33 H 0.167 0.833 34 H 0.416 0.584 35 H 0.051 0.949 36 H 0.044 0.956 37 H 0.113 0.887 38 H 0.105 0.895 39 H 0.077 0.923 40 H 0.030 0.970 41 H 0.088 0.912 42 H 0.414 0.586 43 H 0.110 0.890 44 H 0.104 0.896 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.028 31.432 -5.658 37.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.028 4.028 3 N -0.137 5.137 4 H 0.272 0.728 5 C -0.132 4.132 6 C -0.206 4.206 7 C -0.280 4.280 8 C 0.368 3.632 9 O -0.479 6.479 10 N -0.363 5.363 11 C -0.003 4.003 12 C -0.154 4.154 13 C 0.037 3.963 14 H 0.081 0.919 15 C -0.214 4.214 16 N -0.364 5.364 17 C 0.320 3.680 18 O -0.443 6.443 19 C -0.282 4.282 20 S 0.076 5.924 21 C -0.695 4.695 22 H 0.100 0.900 23 C -0.193 4.193 24 N -0.547 5.547 25 Si 0.821 3.179 26 H -0.194 1.194 27 H -0.201 1.201 28 H -0.181 1.181 29 H 0.095 0.905 30 H 0.109 0.891 31 H 0.090 0.910 32 H 0.224 0.776 33 H 0.184 0.816 34 H 0.253 0.747 35 H 0.069 0.931 36 H 0.063 0.937 37 H 0.131 0.869 38 H 0.123 0.877 39 H 0.096 0.904 40 H 0.049 0.951 41 H 0.107 0.893 42 H 0.251 0.749 43 H 0.128 0.872 44 H 0.122 0.878 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 18.732 30.159 -7.358 36.257 hybrid contribution -0.358 0.699 2.144 2.284 sum 18.374 30.857 -5.214 36.290 Atomic orbital electron populations 1.20514 0.87134 1.04084 1.03461 1.20475 0.94139 0.86530 1.01613 1.41646 1.06244 1.08623 1.57188 0.72846 1.22375 0.86217 0.96606 1.08016 1.22326 0.94948 0.94729 1.08554 1.20232 0.95401 0.91078 1.21333 1.17880 0.84950 0.85554 0.74807 1.90752 1.18751 1.85260 1.53184 1.45566 1.10279 1.05087 1.75361 1.21255 0.97643 0.80346 1.01085 1.21987 0.96653 0.90321 1.06478 1.20982 0.94070 0.95125 0.86102 0.91858 1.22115 0.96979 0.98419 1.03927 1.45916 1.41514 1.34508 1.14467 1.20003 0.79078 0.79962 0.88908 1.90683 1.65145 1.50581 1.37893 1.23387 1.02254 1.03549 0.99043 1.85548 1.49226 1.39800 1.17833 1.23204 1.28319 1.21799 0.96130 0.90028 1.26154 0.95943 0.94066 1.03133 1.70190 1.30392 1.19008 1.35140 0.84937 0.78577 0.77786 0.76571 1.19418 1.20127 1.18148 0.90511 0.89149 0.90969 0.77554 0.81593 0.74700 0.93089 0.93750 0.86890 0.87691 0.90420 0.95069 0.89317 0.74898 0.87154 0.87805 0.91990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.54 9.88 71.23 0.70 -0.83 16 2 C 0.09 1.52 7.17 41.78 0.30 1.82 16 3 N -0.54 -4.56 5.90 -182.72 -1.08 -5.64 16 4 H 0.43 0.72 8.96 -92.71 -0.83 -0.11 16 5 C 0.00 -0.03 11.89 83.12 0.99 0.96 16 6 C -0.18 -2.06 10.56 23.62 0.25 -1.81 16 7 C -0.27 -5.21 6.29 -19.04 -0.12 -5.33 16 8 C 0.58 14.36 7.81 86.62 0.68 15.03 16 9 O -0.60 -20.28 14.82 -4.13 -0.06 -20.35 16 10 N -0.71 -12.54 5.55 -466.51 -2.59 -15.13 16 11 C 0.12 2.42 5.56 86.38 0.48 2.90 16 12 C -0.12 -1.45 4.87 30.59 0.15 -1.30 16 13 C 0.14 2.98 2.57 44.99 0.12 3.10 16 14 H 0.06 1.74 7.58 -2.39 -0.02 1.72 16 15 C -0.16 -2.92 9.48 71.98 0.68 -2.23 16 16 N -0.71 -18.07 4.53 -442.54 -2.00 -20.07 16 17 C 0.53 20.44 7.81 87.66 0.68 21.13 16 18 O -0.56 -26.96 15.52 -3.02 -0.05 -27.01 16 19 C -0.13 -5.45 6.16 71.24 0.44 -5.01 16 20 S -0.15 -8.69 20.57 -56.49 -1.16 -9.86 16 21 C -0.55 -32.19 9.50 67.96 0.65 -31.54 16 22 H 0.08 4.47 7.80 -2.91 -0.02 4.45 16 23 C 0.01 0.68 5.49 84.86 0.47 1.15 16 24 N -0.91 -57.27 13.22 21.65 0.29 -56.99 16 25 Si 1.00 44.79 29.55 68.60 2.03 46.82 16 26 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 27 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 28 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 29 H 0.08 1.23 8.14 -2.38 -0.02 1.22 16 30 H 0.09 0.88 8.14 -2.38 -0.02 0.86 16 31 H 0.07 1.66 6.47 -2.39 -0.02 1.64 16 32 H 0.21 -0.21 8.06 -2.91 -0.02 -0.23 16 33 H 0.17 0.95 7.70 -2.91 -0.02 0.92 16 34 H 0.42 4.17 7.60 -92.70 -0.70 3.47 16 35 H 0.05 1.24 7.75 -2.39 -0.02 1.22 16 36 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 37 H 0.11 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 39 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 40 H 0.03 0.81 8.14 -2.39 -0.02 0.80 16 41 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 42 H 0.41 7.81 8.60 -92.71 -0.80 7.01 16 43 H 0.11 4.09 8.14 -2.40 -0.02 4.07 16 44 H 0.10 4.00 8.14 -2.39 -0.02 3.98 16 45 H 0.27 15.79 8.31 -92.71 -0.77 15.02 16 Total: -1.00 -91.93 396.29 0.53 -91.40 By element: Atomic # 1 Polarization: 20.09 SS G_CDS: -1.30 Total: 18.79 kcal Atomic # 6 Polarization: -8.43 SS G_CDS: 6.46 Total: -1.97 kcal Atomic # 7 Polarization: -92.45 SS G_CDS: -5.39 Total: -97.83 kcal Atomic # 8 Polarization: -47.25 SS G_CDS: -0.11 Total: -47.36 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.82 kcal Atomic # 16 Polarization: -8.69 SS G_CDS: -1.16 Total: -9.86 kcal Total: -91.93 0.53 -91.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001495501748.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.113 kcal (2) G-P(sol) polarization free energy of solvation -91.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds