Wall clock time and date at job start Sat Apr 11 2020 05:38:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86793 * 120.00514 * 2 1 4 4 H 1.48502 * 109.47223 * 270.00181 * 3 2 1 5 5 H 1.48511 * 109.46998 * 29.99876 * 3 2 1 6 6 H 1.48502 * 109.47570 * 150.00022 * 3 2 1 7 7 C 1.38805 * 119.99623 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00260 * 359.97438 * 7 2 1 9 9 S 1.76201 * 119.99932 * 180.02562 * 7 2 1 10 10 C 1.80996 * 99.99932 * 179.97438 * 9 7 2 11 11 C 1.50699 * 109.47160 * 179.97438 * 10 9 7 12 12 O 1.21284 * 119.99901 * 0.02562 * 11 10 9 13 13 N 1.34778 * 120.00249 * 180.27498 * 11 10 9 14 14 C 1.46494 * 119.99906 * 179.72560 * 13 11 10 15 15 C 1.53007 * 109.47126 * 175.06371 * 14 13 11 16 16 N 1.46902 * 110.01229 * 304.08238 * 15 14 13 17 17 C 1.46897 * 111.00299 * 303.79161 * 16 15 14 18 18 C 1.50705 * 109.47168 * 175.89642 * 17 16 15 19 19 C 1.41383 * 126.79700 * 94.70941 * 18 17 16 20 20 C 1.35456 * 103.97914 * 179.88881 * 19 18 17 21 21 O 1.34041 * 106.44954 * 0.37028 * 20 19 18 22 22 N 1.20924 * 111.56549 * 359.74770 * 21 20 19 23 23 C 1.54260 * 110.03407 * 182.64455 * 15 14 13 24 24 C 1.54885 * 104.19728 * 217.10222 * 23 15 14 25 25 C 1.54892 * 102.74733 * 37.94089 * 24 23 15 26 26 C 1.53873 * 110.03372 * 65.47406 * 15 14 13 27 27 H 0.96999 * 119.99746 * 0.02562 * 1 2 3 28 28 H 1.09002 * 109.47023 * 60.00016 * 10 9 7 29 29 H 1.08999 * 109.47514 * 299.99804 * 10 9 7 30 30 H 0.96995 * 119.99870 * 359.72799 * 13 11 10 31 31 H 1.09001 * 109.47425 * 295.05847 * 14 13 11 32 32 H 1.08995 * 109.47567 * 55.06145 * 14 13 11 33 33 H 1.00902 * 110.99862 * 179.83349 * 16 15 14 34 34 H 1.08997 * 109.46865 * 295.89664 * 17 16 15 35 35 H 1.08994 * 109.47073 * 55.89964 * 17 16 15 36 36 H 1.07997 * 128.00951 * 0.02562 * 19 18 17 37 37 H 1.08003 * 126.77082 * 180.13602 * 20 19 18 38 38 H 1.08998 * 110.48794 * 335.78279 * 23 15 14 39 39 H 1.09003 * 110.48960 * 98.42103 * 23 15 14 40 40 H 1.09003 * 110.75996 * 279.63039 * 24 23 15 41 41 H 1.08996 * 110.76010 * 156.25735 * 24 23 15 42 42 H 1.08998 * 110.48963 * 203.37948 * 25 24 23 43 43 H 1.08994 * 110.48493 * 80.73813 * 25 24 23 44 44 H 1.08994 * 110.03198 * 238.57511 * 26 15 14 45 45 H 1.09006 * 110.03221 * 0.02562 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6176 0.0000 4 1 2.4979 2.0463 -1.4001 5 1 1.4478 2.6527 0.7001 6 1 3.5480 1.4400 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 1.4702 -2.1374 -0.0005 9 16 3.7722 -1.2022 0.0001 10 6 4.0864 -2.9847 -0.0001 11 6 5.5728 -3.2328 -0.0002 12 8 6.3439 -2.2966 0.0003 13 7 6.0454 -4.4950 -0.0061 14 6 7.4904 -4.7360 -0.0122 15 6 7.7574 -6.2380 0.1061 16 7 7.1041 -6.7715 1.3088 17 6 7.5455 -6.0518 2.5109 18 6 6.7817 -6.5572 3.7078 19 6 7.1929 -7.5638 4.6115 20 6 6.1714 -7.6454 5.4973 21 8 5.2549 -6.7502 5.1032 22 7 5.6104 -6.1575 4.1110 23 6 9.2761 -6.5015 0.1675 24 6 9.4676 -7.8098 -0.6392 25 6 8.4547 -7.6471 -1.7996 26 6 7.2351 -6.9664 -1.1447 27 1 -0.4850 0.8401 -0.0004 28 1 3.6438 -3.4315 -0.8904 29 1 3.6432 -3.4320 0.8896 30 1 5.4288 -5.2437 -0.0062 31 1 7.9170 -4.3635 -0.9436 32 1 7.9488 -4.2181 0.8301 33 1 7.2686 -7.7629 1.4000 34 1 8.6117 -6.2188 2.6633 35 1 7.3590 -4.9854 2.3848 36 1 8.1102 -8.1338 4.5997 37 1 6.1065 -8.3047 6.3502 38 1 9.8245 -5.6826 -0.2980 39 1 9.5980 -6.6392 1.1998 40 1 9.2204 -8.6791 -0.0298 41 1 10.4855 -7.8820 -1.0222 42 1 8.1770 -8.6209 -2.2030 43 1 8.8704 -7.0132 -2.5828 44 1 6.4975 -7.7163 -0.8592 45 1 6.7918 -6.2498 -1.8362 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001495898750.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:25 Heat of formation + Delta-G solvation = 22.805156 kcal Electronic energy + Delta-G solvation = -27118.315586 eV Core-core repulsion = 23265.147577 eV Total energy + Delta-G solvation = -3853.168009 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -45.12886 -40.29793 -38.63989 -35.72258 -34.32121 -33.09213 -32.36696 -31.82026 -30.15135 -29.14441 -28.41160 -26.34288 -25.53215 -24.25202 -23.33312 -21.62805 -20.90130 -20.07517 -19.57445 -18.05679 -17.83703 -17.65723 -16.70095 -16.55048 -16.05578 -15.61611 -15.17434 -15.10325 -14.89307 -14.69817 -14.37461 -13.91278 -13.73858 -13.64104 -13.31103 -13.17486 -12.88078 -12.72934 -12.38415 -12.05870 -11.83999 -11.65527 -11.47453 -11.46315 -11.34632 -11.19362 -11.01363 -10.95020 -10.85620 -10.51215 -10.38810 -9.87049 -9.79231 -9.41453 -8.94091 -8.85661 -8.79223 -8.41242 -6.82820 -6.21975 -3.92479 1.30873 1.95014 2.86834 3.05518 3.11513 3.36672 3.39624 3.56242 3.65085 3.82200 3.97664 4.13108 4.19660 4.35929 4.39724 4.45668 4.81175 4.84281 4.86205 4.86849 4.95239 5.01125 5.08613 5.17105 5.17782 5.24436 5.32761 5.34451 5.42891 5.45363 5.51531 5.57214 5.65416 5.70125 5.71598 5.78799 5.90251 5.93374 5.96050 6.15977 6.54152 6.72412 6.94888 7.81414 8.01507 8.11521 8.49764 8.64058 9.24458 10.87488 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010532 B = 0.003055 C = 0.002528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2658.012484 B = 9161.618696 C =11075.373489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.095 3.905 3 Si 0.857 3.143 4 H -0.268 1.268 5 H -0.275 1.275 6 H -0.235 1.235 7 C -0.519 4.519 8 H 0.088 0.912 9 S -0.144 6.144 10 C -0.122 4.122 11 C 0.530 3.470 12 O -0.527 6.527 13 N -0.723 5.723 14 C 0.135 3.865 15 C 0.104 3.896 16 N -0.665 5.665 17 C 0.130 3.870 18 C 0.015 3.985 19 C -0.235 4.235 20 C -0.063 4.063 21 O 0.106 5.894 22 N -0.336 5.336 23 C -0.154 4.154 24 C -0.122 4.122 25 C -0.125 4.125 26 C -0.117 4.117 27 H 0.270 0.730 28 H 0.095 0.905 29 H 0.097 0.903 30 H 0.406 0.594 31 H 0.069 0.931 32 H 0.065 0.935 33 H 0.345 0.655 34 H 0.056 0.944 35 H 0.098 0.902 36 H 0.168 0.832 37 H 0.214 0.786 38 H 0.077 0.923 39 H 0.069 0.931 40 H 0.065 0.935 41 H 0.067 0.933 42 H 0.067 0.933 43 H 0.068 0.932 44 H 0.077 0.923 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.797 -23.398 5.194 31.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.113 4.113 3 Si 0.682 3.318 4 H -0.193 1.193 5 H -0.200 1.200 6 H -0.159 1.159 7 C -0.666 4.666 8 H 0.106 0.894 9 S 0.083 5.917 10 C -0.272 4.272 11 C 0.316 3.684 12 O -0.403 6.403 13 N -0.377 5.377 14 C 0.010 3.990 15 C 0.013 3.987 16 N -0.297 5.297 17 C 0.001 3.999 18 C -0.144 4.144 19 C -0.257 4.257 20 C -0.144 4.144 21 O 0.036 5.964 22 N -0.037 5.037 23 C -0.193 4.193 24 C -0.160 4.160 25 C -0.163 4.163 26 C -0.155 4.155 27 H 0.080 0.920 28 H 0.113 0.887 29 H 0.116 0.884 30 H 0.241 0.759 31 H 0.088 0.912 32 H 0.083 0.917 33 H 0.164 0.836 34 H 0.074 0.926 35 H 0.116 0.884 36 H 0.185 0.815 37 H 0.231 0.769 38 H 0.096 0.904 39 H 0.088 0.912 40 H 0.084 0.916 41 H 0.086 0.914 42 H 0.086 0.914 43 H 0.086 0.914 44 H 0.096 0.904 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 20.457 -20.417 4.662 29.275 hybrid contribution 0.548 -1.717 0.398 1.846 sum 21.005 -22.134 5.059 30.931 Atomic orbital electron populations 1.69944 1.05912 1.27660 1.48364 1.24711 0.94439 0.98921 0.93272 0.86733 0.81933 0.83311 0.79860 1.19261 1.20005 1.15926 1.22338 0.88365 0.97521 1.58409 0.89407 1.84719 1.09173 1.00424 1.97419 1.23251 0.94223 1.03989 1.05765 1.20260 0.90529 0.82353 0.75224 1.90684 1.58789 1.42377 1.48420 1.45775 1.07042 1.08025 1.76862 1.21368 0.82682 0.92884 1.02018 1.21878 0.91838 0.94331 0.90700 1.60525 1.60754 1.07778 1.00673 1.20272 0.94825 1.00060 0.84786 1.23442 0.93227 0.97860 0.99909 1.22721 1.02765 1.02823 0.97396 1.26026 0.89704 0.96647 1.02055 1.84931 1.40131 1.38828 1.32483 1.73994 1.14430 1.16172 0.99102 1.23092 0.96458 0.98906 1.00882 1.22457 0.99487 0.97033 0.96997 1.22381 0.95503 1.00654 0.97753 1.22276 0.98109 0.99925 0.95158 0.92021 0.88695 0.88446 0.75890 0.91245 0.91672 0.83632 0.92590 0.88432 0.81477 0.76918 0.90392 0.91198 0.91647 0.91386 0.91446 0.91361 0.90416 0.90450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -27.36 13.97 55.49 0.78 -26.58 16 2 C 0.09 2.86 5.50 -17.43 -0.10 2.77 16 3 Si 0.86 22.46 27.74 -169.99 -4.71 17.74 16 4 H -0.27 -6.90 7.11 56.52 0.40 -6.50 16 5 H -0.27 -6.92 7.11 56.52 0.40 -6.51 16 6 H -0.24 -6.18 6.74 56.52 0.38 -5.80 16 7 C -0.52 -15.51 10.04 30.94 0.31 -15.20 16 8 H 0.09 2.74 8.03 -52.49 -0.42 2.32 16 9 S -0.14 -3.81 18.55 -107.50 -1.99 -5.80 16 10 C -0.12 -2.54 6.16 36.01 0.22 -2.32 16 11 C 0.53 10.03 7.85 -10.99 -0.09 9.94 16 12 O -0.53 -11.84 15.86 5.55 0.09 -11.75 16 13 N -0.72 -9.99 5.10 -60.29 -0.31 -10.30 16 14 C 0.14 1.54 3.62 -4.04 -0.01 1.53 16 15 C 0.10 0.81 0.48 -130.48 -0.06 0.75 16 16 N -0.67 -5.41 5.55 -100.09 -0.56 -5.97 16 17 C 0.13 1.20 5.60 -4.98 -0.03 1.17 16 18 C 0.02 0.16 6.88 -82.10 -0.56 -0.41 16 19 C -0.24 -1.70 11.12 -39.38 -0.44 -2.14 16 20 C -0.06 -0.43 12.30 29.74 0.37 -0.06 16 21 O 0.11 1.17 11.20 17.17 0.19 1.37 16 22 N -0.34 -4.48 12.07 33.42 0.40 -4.07 16 23 C -0.15 -0.97 5.83 -25.08 -0.15 -1.11 16 24 C -0.12 -0.65 6.91 -24.74 -0.17 -0.82 16 25 C -0.13 -0.75 6.83 -25.07 -0.17 -0.92 16 26 C -0.12 -0.86 5.78 -25.62 -0.15 -1.00 16 27 H 0.27 7.77 8.31 -40.82 -0.34 7.43 16 28 H 0.09 1.84 8.14 -51.91 -0.42 1.42 16 29 H 0.10 1.98 8.14 -51.92 -0.42 1.56 16 30 H 0.41 5.05 8.00 -40.82 -0.33 4.73 16 31 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.07 0.82 6.54 -51.93 -0.34 0.48 16 33 H 0.34 2.34 8.77 -39.29 -0.34 1.99 16 34 H 0.06 0.40 6.37 -51.93 -0.33 0.07 16 35 H 0.10 1.18 6.14 -51.93 -0.32 0.86 16 36 H 0.17 0.72 8.06 -52.49 -0.42 0.30 16 37 H 0.21 0.48 8.06 -52.48 -0.42 0.05 16 38 H 0.08 0.53 7.85 -51.93 -0.41 0.12 16 39 H 0.07 0.41 6.11 -51.93 -0.32 0.09 16 40 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 41 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 42 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 43 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.08 0.57 7.92 -51.93 -0.41 0.16 16 45 H 0.08 0.66 7.55 -51.93 -0.39 0.27 16 LS Contribution 380.58 15.07 5.74 5.74 Total: -1.00 -36.31 380.58 -7.98 -44.29 By element: Atomic # 1 Polarization: 9.75 SS G_CDS: -6.57 Total: 3.18 kcal Atomic # 6 Polarization: -6.80 SS G_CDS: -1.03 Total: -7.83 kcal Atomic # 7 Polarization: -47.24 SS G_CDS: 0.32 Total: -46.92 kcal Atomic # 8 Polarization: -10.67 SS G_CDS: 0.28 Total: -10.39 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -4.71 Total: 17.74 kcal Atomic # 16 Polarization: -3.81 SS G_CDS: -1.99 Total: -5.80 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -36.31 -7.98 -44.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001495898750.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.097 kcal (2) G-P(sol) polarization free energy of solvation -36.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.291 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds