Wall clock time and date at job start Sat Apr 11 2020 05:38:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86801 * 120.00211 * 2 1 4 4 H 1.48492 * 109.47113 * 270.00149 * 3 2 1 5 5 H 1.48503 * 109.46787 * 29.99673 * 3 2 1 6 6 H 1.48499 * 109.47253 * 149.99368 * 3 2 1 7 7 C 1.38814 * 119.99836 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99670 * 180.02562 * 7 2 1 9 9 N 1.36929 * 120.00048 * 0.02562 * 7 2 1 10 10 C 1.46498 * 120.00099 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.49520 * 60.06995 * 10 9 7 12 12 O 1.42901 * 109.47182 * 304.93828 * 11 10 9 13 13 C 1.53044 * 109.52619 * 180.14508 * 10 9 7 14 14 C 1.53044 * 109.53474 * 58.60676 * 13 10 9 15 15 C 1.52772 * 109.38204 * 61.23836 * 14 13 10 16 16 N 1.46926 * 109.00693 * 305.58769 * 15 14 13 17 17 C 1.34774 * 120.63050 * 233.58221 * 16 15 14 18 18 O 1.21284 * 120.00216 * 179.72519 * 17 16 15 19 19 C 1.50703 * 119.99791 * 359.72182 * 17 16 15 20 20 C 1.53002 * 109.46724 * 179.97438 * 19 17 16 21 21 C 1.50703 * 109.46724 * 179.97438 * 20 19 17 22 22 N 1.29034 * 124.91509 * 90.00185 * 21 20 19 23 23 C 1.31774 * 117.12480 * 179.97438 * 22 21 20 24 24 C 1.33641 * 114.50001 * 0.02562 * 23 22 21 25 25 S 1.70974 * 124.91905 * 269.99783 * 21 20 19 26 26 C 1.46930 * 118.73833 * 53.31221 * 16 15 14 27 27 H 0.97003 * 119.99738 * 0.02562 * 1 2 3 28 28 H 0.97003 * 120.00283 * 0.02562 * 9 7 2 29 29 H 1.09001 * 109.47285 * 64.93251 * 11 10 9 30 30 H 1.08996 * 109.47564 * 184.93170 * 11 10 9 31 31 H 0.96699 * 114.00245 * 180.02562 * 12 11 10 32 32 H 1.09004 * 109.45982 * 178.62637 * 13 10 9 33 33 H 1.08995 * 109.46216 * 298.60466 * 13 10 9 34 34 H 1.08993 * 109.49786 * 181.31273 * 14 13 10 35 35 H 1.08995 * 109.49619 * 301.41693 * 14 13 10 36 36 H 1.08996 * 109.50838 * 185.70398 * 15 14 13 37 37 H 1.09001 * 109.43034 * 65.42148 * 15 14 13 38 38 H 1.08997 * 109.46951 * 60.00244 * 19 17 16 39 39 H 1.08999 * 109.47340 * 299.99882 * 19 17 16 40 40 H 1.08997 * 109.47142 * 60.00441 * 20 19 17 41 41 H 1.08999 * 109.47181 * 300.00059 * 20 19 17 42 42 H 1.07997 * 122.75197 * 179.97438 * 23 22 21 43 43 H 1.07998 * 126.03899 * 180.02562 * 24 23 22 44 44 H 1.09004 * 109.58712 * 66.42684 * 26 16 15 45 45 H 1.09000 * 109.58481 * 186.70884 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4476 2.6526 0.7000 6 1 3.5477 1.4402 0.7002 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 2.0580 -3.6568 0.0005 11 6 2.9365 -3.7392 1.2505 12 8 3.7866 -2.5921 1.3117 13 6 1.0645 -4.8209 -0.0031 14 6 0.1635 -4.7209 -1.2362 15 6 1.0196 -4.8112 -2.4983 16 7 2.0733 -3.7892 -2.4359 17 6 2.2389 -2.9113 -3.4450 18 8 3.1092 -2.0691 -3.3794 19 6 1.3428 -2.9761 -4.6549 20 6 1.7391 -1.8768 -5.6425 21 6 0.8434 -1.9421 -6.8527 22 7 -0.2744 -1.3101 -6.9791 23 6 -0.9356 -1.4783 -8.1065 24 6 -0.3428 -2.2982 -8.9796 25 16 1.1612 -2.8642 -8.2570 26 6 2.9391 -3.7386 -1.2499 27 1 -0.4850 0.8401 -0.0004 28 1 0.3555 -2.3880 -0.0002 29 1 2.3040 -3.7704 2.1377 30 1 3.5463 -4.6415 1.2072 31 1 4.3730 -2.5778 2.0804 32 1 1.6104 -5.7641 -0.0277 33 1 0.4525 -4.7789 0.8978 34 1 -0.5589 -5.5370 -1.2260 35 1 -0.3640 -3.7672 -1.2249 36 1 0.3950 -4.6392 -3.3748 37 1 1.4732 -5.8005 -2.5587 38 1 0.3069 -2.8321 -4.3479 39 1 1.4480 -3.9499 -5.1332 40 1 2.7750 -2.0205 -5.9496 41 1 1.6336 -0.9032 -5.1640 42 1 -1.8795 -0.9939 -8.3082 43 1 -0.7188 -2.5661 -9.9559 44 1 3.5524 -4.6387 -1.2065 45 1 3.5824 -2.8604 -1.3044 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001502600457.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:45 Heat of formation + Delta-G solvation = -17.250686 kcal Electronic energy + Delta-G solvation = -28473.251562 eV Core-core repulsion = 24618.346602 eV Total energy + Delta-G solvation = -3854.904960 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -39.97727 -39.59133 -37.80471 -35.71520 -33.88287 -33.62382 -32.18887 -31.04394 -29.77161 -28.54568 -26.67934 -25.28423 -24.72490 -23.42802 -22.87673 -21.64918 -19.97192 -19.16450 -18.19234 -18.07841 -17.26658 -16.60586 -16.14495 -15.62975 -15.54781 -15.36149 -14.80850 -14.41187 -14.14966 -14.11972 -13.75923 -13.56691 -13.36934 -13.20769 -13.03997 -12.58682 -12.43676 -12.14916 -12.03151 -11.88442 -11.62041 -11.55969 -11.13195 -10.98823 -10.74964 -10.66255 -10.56854 -10.41144 -10.12326 -9.67319 -9.65574 -9.51128 -9.45171 -9.24138 -8.94054 -8.92617 -8.73247 -7.99386 -6.74746 -5.50419 -2.75651 0.60431 1.26157 1.64870 2.76719 3.21485 3.55298 3.63966 3.70102 3.71951 4.12517 4.78060 4.80728 4.86529 5.02142 5.05731 5.15664 5.18206 5.23680 5.27362 5.37528 5.47251 5.51299 5.55713 5.67478 5.77643 5.81149 5.90433 5.93280 5.95924 6.05223 6.10021 6.13497 6.21617 6.22448 6.29681 6.41088 6.65208 6.82078 6.92793 7.15653 7.70306 8.00094 8.23248 8.42072 8.67589 8.81045 9.81187 10.28392 10.64123 11.73330 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011842 B = 0.003800 C = 0.003250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2363.862439 B = 7367.317395 C = 8612.987676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C -0.023 4.023 3 Si 0.901 3.099 4 H -0.293 1.293 5 H -0.299 1.299 6 H -0.284 1.284 7 C -0.194 4.194 8 H 0.091 0.909 9 N -0.702 5.702 10 C 0.188 3.812 11 C 0.075 3.925 12 O -0.535 6.535 13 C -0.115 4.115 14 C -0.133 4.133 15 C 0.111 3.889 16 N -0.594 5.594 17 C 0.523 3.477 18 O -0.530 6.530 19 C -0.129 4.129 20 C -0.032 4.032 21 C 0.067 3.933 22 N -0.472 5.472 23 C 0.043 3.957 24 C -0.269 4.269 25 S 0.108 5.892 26 C 0.111 3.889 27 H 0.248 0.752 28 H 0.381 0.619 29 H 0.037 0.963 30 H 0.023 0.977 31 H 0.351 0.649 32 H 0.061 0.939 33 H 0.066 0.934 34 H 0.067 0.933 35 H 0.081 0.919 36 H 0.077 0.923 37 H 0.061 0.939 38 H 0.099 0.901 39 H 0.087 0.913 40 H 0.093 0.907 41 H 0.108 0.892 42 H 0.175 0.825 43 H 0.175 0.825 44 H 0.043 0.957 45 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.673 -14.724 -12.276 19.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.216 4.216 3 Si 0.734 3.266 4 H -0.221 1.221 5 H -0.226 1.226 6 H -0.209 1.209 7 C -0.325 4.325 8 H 0.109 0.891 9 N -0.342 5.342 10 C 0.094 3.906 11 C -0.007 4.007 12 O -0.337 6.337 13 C -0.153 4.153 14 C -0.172 4.172 15 C -0.013 4.013 16 N -0.327 5.327 17 C 0.310 3.690 18 O -0.406 6.406 19 C -0.171 4.171 20 C -0.073 4.073 21 C -0.211 4.211 22 N -0.185 5.185 23 C -0.108 4.108 24 C -0.408 4.408 25 S 0.361 5.639 26 C -0.014 4.014 27 H 0.058 0.942 28 H 0.216 0.784 29 H 0.056 0.944 30 H 0.041 0.959 31 H 0.195 0.805 32 H 0.079 0.921 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.100 0.900 36 H 0.095 0.905 37 H 0.079 0.921 38 H 0.117 0.883 39 H 0.105 0.895 40 H 0.111 0.889 41 H 0.126 0.874 42 H 0.192 0.808 43 H 0.192 0.808 44 H 0.061 0.939 45 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 1.561 -14.284 -12.699 19.177 hybrid contribution -0.746 1.159 0.353 1.422 sum 0.815 -13.125 -12.346 18.038 Atomic orbital electron populations 1.69652 1.04991 1.24960 1.60184 1.24636 0.95313 0.97363 1.04332 0.86238 0.78625 0.84409 0.77330 1.22131 1.22562 1.20944 1.19495 0.91844 0.82973 1.38221 0.89104 1.42405 1.05163 0.99247 1.87419 1.19947 0.90937 0.88123 0.91551 1.22755 0.92079 0.86730 0.99098 1.86978 1.54672 1.43815 1.48284 1.21618 0.97767 0.97533 0.98369 1.21798 0.97863 1.03220 0.94283 1.21555 0.89672 0.91164 0.98873 1.47730 1.33840 1.32248 1.18843 1.20129 0.84560 0.80569 0.83768 1.90703 1.34998 1.34996 1.79913 1.21605 1.01558 0.99383 0.94563 1.20058 0.96096 1.02135 0.88999 1.27274 0.96285 0.97342 1.00222 1.66339 1.06345 1.22882 1.22981 1.21876 1.01506 0.98940 0.88512 1.27046 0.99942 1.07393 1.06405 1.83993 1.21491 1.46493 1.11876 1.22114 0.92828 1.01740 0.84699 0.94199 0.78420 0.94448 0.95932 0.80474 0.92060 0.91561 0.91479 0.90017 0.90469 0.92126 0.88287 0.89506 0.88871 0.87372 0.80813 0.80751 0.93867 0.87902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -29.54 13.06 55.49 0.72 -28.82 16 2 C -0.02 -0.69 5.50 -17.43 -0.10 -0.79 16 3 Si 0.90 24.58 29.55 -169.99 -5.02 19.55 16 4 H -0.29 -8.20 7.11 56.52 0.40 -7.80 16 5 H -0.30 -8.15 7.11 56.52 0.40 -7.75 16 6 H -0.28 -7.56 7.11 56.52 0.40 -7.16 16 7 C -0.19 -5.47 8.07 -15.06 -0.12 -5.59 16 8 H 0.09 2.65 5.27 -52.49 -0.28 2.37 16 9 N -0.70 -17.01 4.75 -47.12 -0.22 -17.24 16 10 C 0.19 3.52 0.68 -131.70 -0.09 3.43 16 11 C 0.07 1.30 6.09 37.16 0.23 1.52 16 12 O -0.53 -10.43 10.05 -35.23 -0.35 -10.78 16 13 C -0.11 -1.69 4.77 -26.69 -0.13 -1.82 16 14 C -0.13 -1.86 5.90 -26.83 -0.16 -2.02 16 15 C 0.11 1.45 6.31 -3.93 -0.02 1.43 16 16 N -0.59 -10.24 2.90 -173.02 -0.50 -10.74 16 17 C 0.52 9.80 7.70 -10.99 -0.08 9.72 16 18 O -0.53 -12.20 15.39 5.55 0.09 -12.11 16 19 C -0.13 -1.88 4.03 -27.88 -0.11 -1.99 16 20 C -0.03 -0.47 5.09 -27.88 -0.14 -0.61 16 21 C 0.07 0.91 6.64 -13.45 -0.09 0.82 16 22 N -0.47 -7.01 10.54 -11.86 -0.13 -7.14 16 23 C 0.04 0.49 11.35 -19.19 -0.22 0.28 16 24 C -0.27 -2.56 11.37 29.12 0.33 -2.23 16 25 S 0.11 1.11 23.18 -107.50 -2.49 -1.38 16 26 C 0.11 2.08 4.91 -3.71 -0.02 2.06 16 27 H 0.25 7.67 8.31 -40.82 -0.34 7.33 16 28 H 0.38 9.92 6.43 -40.82 -0.26 9.66 16 29 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.35 5.08 9.12 45.56 0.42 5.49 16 32 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 33 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.08 1.43 6.75 -51.93 -0.35 1.08 16 36 H 0.08 0.89 5.93 -51.93 -0.31 0.58 16 37 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.10 1.50 7.68 -51.93 -0.40 1.10 16 39 H 0.09 0.97 7.95 -51.93 -0.41 0.56 16 40 H 0.09 1.26 8.10 -51.93 -0.42 0.84 16 41 H 0.11 1.91 8.10 -51.93 -0.42 1.49 16 42 H 0.17 1.57 8.06 -52.49 -0.42 1.15 16 43 H 0.18 1.12 8.06 -52.49 -0.42 0.69 16 44 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.10 2.39 5.83 -51.93 -0.30 2.08 16 LS Contribution 371.72 15.07 5.60 5.60 Total: -1.00 -36.59 371.72 -8.71 -45.30 By element: Atomic # 1 Polarization: 19.22 SS G_CDS: -5.68 Total: 13.55 kcal Atomic # 6 Polarization: 4.93 SS G_CDS: -0.72 Total: 4.21 kcal Atomic # 7 Polarization: -63.80 SS G_CDS: -0.13 Total: -63.93 kcal Atomic # 8 Polarization: -22.63 SS G_CDS: -0.27 Total: -22.90 kcal Atomic # 14 Polarization: 24.58 SS G_CDS: -5.02 Total: 19.55 kcal Atomic # 16 Polarization: 1.11 SS G_CDS: -2.49 Total: -1.38 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -36.59 -8.71 -45.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001502600457.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.050 kcal (2) G-P(sol) polarization free energy of solvation -36.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds