Wall clock time and date at job start Sat Apr 11 2020 05:38:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86801 * 120.00211 * 2 1 4 4 H 1.48492 * 109.47113 * 270.00149 * 3 2 1 5 5 H 1.48503 * 109.46787 * 29.99673 * 3 2 1 6 6 H 1.48499 * 109.47253 * 149.99368 * 3 2 1 7 7 C 1.38814 * 119.99836 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99670 * 180.02562 * 7 2 1 9 9 N 1.36929 * 120.00048 * 0.02562 * 7 2 1 10 10 C 1.46498 * 120.00099 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.49520 * 60.06995 * 10 9 7 12 12 O 1.42901 * 109.47182 * 304.93828 * 11 10 9 13 13 C 1.53044 * 109.52619 * 180.14508 * 10 9 7 14 14 C 1.53044 * 109.53474 * 58.60676 * 13 10 9 15 15 C 1.52772 * 109.38204 * 61.23836 * 14 13 10 16 16 N 1.46926 * 109.00693 * 305.58769 * 15 14 13 17 17 C 1.34774 * 120.63050 * 233.58221 * 16 15 14 18 18 O 1.21284 * 120.00216 * 179.72519 * 17 16 15 19 19 C 1.50703 * 119.99791 * 359.72182 * 17 16 15 20 20 C 1.53002 * 109.46724 * 179.97438 * 19 17 16 21 21 C 1.50703 * 109.46724 * 179.97438 * 20 19 17 22 22 N 1.29034 * 124.91509 * 90.00185 * 21 20 19 23 23 C 1.31774 * 117.12480 * 179.97438 * 22 21 20 24 24 C 1.33641 * 114.50001 * 0.02562 * 23 22 21 25 25 S 1.70974 * 124.91905 * 269.99783 * 21 20 19 26 26 C 1.46930 * 118.73833 * 53.31221 * 16 15 14 27 27 H 0.97003 * 119.99738 * 0.02562 * 1 2 3 28 28 H 0.97003 * 120.00283 * 0.02562 * 9 7 2 29 29 H 1.09001 * 109.47285 * 64.93251 * 11 10 9 30 30 H 1.08996 * 109.47564 * 184.93170 * 11 10 9 31 31 H 0.96699 * 114.00245 * 180.02562 * 12 11 10 32 32 H 1.09004 * 109.45982 * 178.62637 * 13 10 9 33 33 H 1.08995 * 109.46216 * 298.60466 * 13 10 9 34 34 H 1.08993 * 109.49786 * 181.31273 * 14 13 10 35 35 H 1.08995 * 109.49619 * 301.41693 * 14 13 10 36 36 H 1.08996 * 109.50838 * 185.70398 * 15 14 13 37 37 H 1.09001 * 109.43034 * 65.42148 * 15 14 13 38 38 H 1.08997 * 109.46951 * 60.00244 * 19 17 16 39 39 H 1.08999 * 109.47340 * 299.99882 * 19 17 16 40 40 H 1.08997 * 109.47142 * 60.00441 * 20 19 17 41 41 H 1.08999 * 109.47181 * 300.00059 * 20 19 17 42 42 H 1.07997 * 122.75197 * 179.97438 * 23 22 21 43 43 H 1.07998 * 126.03899 * 180.02562 * 24 23 22 44 44 H 1.09004 * 109.58712 * 66.42684 * 26 16 15 45 45 H 1.09000 * 109.58481 * 186.70884 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4476 2.6526 0.7000 6 1 3.5477 1.4402 0.7002 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 2.0580 -3.6568 0.0005 11 6 2.9365 -3.7392 1.2505 12 8 3.7866 -2.5921 1.3117 13 6 1.0645 -4.8209 -0.0031 14 6 0.1635 -4.7209 -1.2362 15 6 1.0196 -4.8112 -2.4983 16 7 2.0733 -3.7892 -2.4359 17 6 2.2389 -2.9113 -3.4450 18 8 3.1092 -2.0691 -3.3794 19 6 1.3428 -2.9761 -4.6549 20 6 1.7391 -1.8768 -5.6425 21 6 0.8434 -1.9421 -6.8527 22 7 -0.2744 -1.3101 -6.9791 23 6 -0.9356 -1.4783 -8.1065 24 6 -0.3428 -2.2982 -8.9796 25 16 1.1612 -2.8642 -8.2570 26 6 2.9391 -3.7386 -1.2499 27 1 -0.4850 0.8401 -0.0004 28 1 0.3555 -2.3880 -0.0002 29 1 2.3040 -3.7704 2.1377 30 1 3.5463 -4.6415 1.2072 31 1 4.3730 -2.5778 2.0804 32 1 1.6104 -5.7641 -0.0277 33 1 0.4525 -4.7789 0.8978 34 1 -0.5589 -5.5370 -1.2260 35 1 -0.3640 -3.7672 -1.2249 36 1 0.3950 -4.6392 -3.3748 37 1 1.4732 -5.8005 -2.5587 38 1 0.3069 -2.8321 -4.3479 39 1 1.4480 -3.9499 -5.1332 40 1 2.7750 -2.0205 -5.9496 41 1 1.6336 -0.9032 -5.1640 42 1 -1.8795 -0.9939 -8.3082 43 1 -0.7188 -2.5661 -9.9559 44 1 3.5524 -4.6387 -1.2065 45 1 3.5824 -2.8604 -1.3044 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001502600457.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:44 Heat of formation + Delta-G solvation = -46.281384 kcal Electronic energy + Delta-G solvation = -28474.510428 eV Core-core repulsion = 24618.346602 eV Total energy + Delta-G solvation = -3856.163826 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.30302 -40.59751 -39.28609 -37.13209 -35.53510 -34.92554 -33.87288 -32.52115 -30.87938 -30.28650 -27.88783 -26.53257 -25.95538 -25.49558 -23.95823 -22.90486 -20.91256 -20.59014 -19.63448 -19.19601 -18.97224 -17.89466 -17.76866 -17.09063 -16.67940 -16.50617 -16.26296 -15.83057 -15.65212 -15.43218 -15.24076 -14.90917 -14.63473 -14.49653 -14.45351 -13.91349 -13.67982 -13.53018 -13.43281 -13.22818 -13.04769 -12.89912 -12.71478 -12.52632 -12.41944 -12.19263 -12.04812 -11.87087 -11.73762 -11.32667 -11.27556 -10.90690 -10.65928 -10.56524 -10.54009 -10.36658 -9.81781 -9.45454 -8.77451 -7.79636 -4.99635 -0.27169 0.41163 0.79961 1.38816 1.44895 1.49511 1.77796 1.86472 2.27093 2.65111 3.15284 3.41717 3.64857 3.70600 3.92172 3.92590 4.02052 4.05272 4.12052 4.21493 4.28714 4.37713 4.42414 4.46166 4.55637 4.58032 4.64415 4.70799 4.79226 4.83619 4.86565 4.95808 4.98171 5.06349 5.07821 5.22252 5.23195 5.48316 5.55268 5.79100 5.94633 6.45792 6.63855 6.83338 7.18364 7.39725 7.54538 8.24383 8.46172 9.44969 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011842 B = 0.003800 C = 0.003250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2363.862439 B = 7367.317395 C = 8612.987676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.979 5.979 2 C -0.091 4.091 3 Si 0.942 3.058 4 H -0.311 1.311 5 H -0.299 1.299 6 H -0.274 1.274 7 C -0.158 4.158 8 H 0.081 0.919 9 N -0.710 5.710 10 C 0.173 3.827 11 C 0.073 3.927 12 O -0.571 6.571 13 C -0.109 4.109 14 C -0.131 4.131 15 C 0.105 3.895 16 N -0.596 5.596 17 C 0.507 3.493 18 O -0.588 6.588 19 C -0.114 4.114 20 C -0.026 4.026 21 C 0.031 3.969 22 N -0.513 5.513 23 C 0.015 3.985 24 C -0.248 4.248 25 S 0.168 5.832 26 C 0.115 3.885 27 H 0.238 0.762 28 H 0.370 0.630 29 H 0.036 0.964 30 H 0.066 0.934 31 H 0.373 0.627 32 H 0.103 0.897 33 H 0.064 0.936 34 H 0.107 0.893 35 H 0.036 0.964 36 H 0.093 0.907 37 H 0.103 0.897 38 H 0.091 0.909 39 H 0.130 0.870 40 H 0.099 0.901 41 H 0.061 0.939 42 H 0.192 0.808 43 H 0.213 0.787 44 H 0.080 0.920 45 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.749 -18.993 -13.852 23.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.634 5.634 2 C -0.280 4.280 3 Si 0.776 3.224 4 H -0.240 1.240 5 H -0.226 1.226 6 H -0.199 1.199 7 C -0.291 4.291 8 H 0.099 0.901 9 N -0.349 5.349 10 C 0.082 3.918 11 C -0.007 4.007 12 O -0.377 6.377 13 C -0.147 4.147 14 C -0.169 4.169 15 C -0.017 4.017 16 N -0.327 5.327 17 C 0.296 3.704 18 O -0.468 6.468 19 C -0.155 4.155 20 C -0.067 4.067 21 C -0.245 4.245 22 N -0.229 5.229 23 C -0.135 4.135 24 C -0.386 4.386 25 S 0.421 5.579 26 C -0.010 4.010 27 H 0.047 0.953 28 H 0.203 0.797 29 H 0.054 0.946 30 H 0.084 0.916 31 H 0.220 0.780 32 H 0.122 0.878 33 H 0.083 0.917 34 H 0.125 0.875 35 H 0.055 0.945 36 H 0.112 0.888 37 H 0.121 0.879 38 H 0.109 0.891 39 H 0.148 0.852 40 H 0.117 0.883 41 H 0.080 0.920 42 H 0.208 0.792 43 H 0.230 0.770 44 H 0.098 0.902 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 1.670 -18.634 -14.235 23.509 hybrid contribution -0.681 2.309 0.778 2.530 sum 0.989 -16.325 -13.457 21.179 Atomic orbital electron populations 1.69760 1.05761 1.24399 1.63499 1.25151 0.96009 0.99674 1.07213 0.85530 0.78190 0.82412 0.76241 1.24006 1.22591 1.19950 1.19606 0.91459 0.84410 1.33659 0.90102 1.42541 1.04792 1.00395 1.87154 1.20456 0.91984 0.87197 0.92138 1.22743 0.92334 0.87702 0.97883 1.86872 1.55571 1.45360 1.49881 1.21633 0.97127 0.97176 0.98715 1.21786 0.98342 1.02360 0.94404 1.21937 0.88893 0.91649 0.99196 1.47935 1.34340 1.32648 1.17748 1.20939 0.84366 0.79908 0.85172 1.90670 1.37574 1.37302 1.81264 1.21534 0.99630 1.01445 0.92936 1.19837 0.97071 0.99912 0.89865 1.26910 0.96454 0.99705 1.01462 1.66296 1.07396 1.23994 1.25200 1.22180 1.02539 1.00490 0.88274 1.27550 0.98869 1.05141 1.07088 1.83706 1.21010 1.44260 1.08935 1.21923 0.92796 1.01037 0.85212 0.95289 0.79725 0.94606 0.91555 0.78002 0.87832 0.91740 0.87464 0.94547 0.88844 0.87858 0.89106 0.85230 0.88270 0.92049 0.79152 0.77043 0.90215 0.93107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -63.98 13.06 21.65 0.28 -63.70 16 2 C -0.09 -5.70 5.50 84.86 0.47 -5.23 16 3 Si 0.94 52.91 29.55 68.60 2.03 54.94 16 4 H -0.31 -18.09 7.11 99.48 0.71 -17.39 16 5 H -0.30 -16.59 7.11 99.48 0.71 -15.88 16 6 H -0.27 -14.70 7.11 99.48 0.71 -14.00 16 7 C -0.16 -9.24 8.07 84.04 0.68 -8.56 16 8 H 0.08 4.89 5.27 -2.91 -0.02 4.87 16 9 N -0.71 -35.07 4.75 -303.00 -1.44 -36.51 16 10 C 0.17 6.24 0.68 3.68 0.00 6.25 16 11 C 0.07 2.39 6.09 71.98 0.44 2.83 16 12 O -0.57 -21.96 10.05 -148.98 -1.50 -23.46 16 13 C -0.11 -2.82 4.77 30.62 0.15 -2.67 16 14 C -0.13 -3.25 5.90 30.53 0.18 -3.07 16 15 C 0.10 2.36 6.31 86.22 0.54 2.91 16 16 N -0.60 -19.82 2.90 -819.71 -2.37 -22.19 16 17 C 0.51 19.42 7.70 87.66 0.67 20.09 16 18 O -0.59 -28.69 15.39 -3.04 -0.05 -28.74 16 19 C -0.11 -3.31 4.03 29.85 0.12 -3.19 16 20 C -0.03 -0.79 5.09 29.85 0.15 -0.64 16 21 C 0.03 0.85 6.64 88.52 0.59 1.43 16 22 N -0.51 -15.47 10.54 -191.45 -2.02 -17.49 16 23 C 0.02 0.33 11.35 83.66 0.95 1.28 16 24 C -0.25 -3.94 11.37 66.78 0.76 -3.18 16 25 S 0.17 3.01 23.18 -56.49 -1.31 1.70 16 26 C 0.12 4.18 4.91 86.36 0.42 4.61 16 27 H 0.24 15.48 8.31 -92.71 -0.77 14.71 16 28 H 0.37 19.86 6.43 -92.71 -0.60 19.26 16 29 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.37 10.43 9.12 -74.06 -0.68 9.75 16 32 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 33 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 34 H 0.11 1.85 8.14 -2.39 -0.02 1.83 16 35 H 0.04 1.25 6.75 -2.39 -0.02 1.23 16 36 H 0.09 1.82 5.93 -2.39 -0.01 1.81 16 37 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 38 H 0.09 2.80 7.68 -2.39 -0.02 2.78 16 39 H 0.13 2.56 7.95 -2.39 -0.02 2.55 16 40 H 0.10 2.83 8.10 -2.39 -0.02 2.81 16 41 H 0.06 2.43 8.10 -2.39 -0.02 2.41 16 42 H 0.19 3.23 8.06 -2.91 -0.02 3.20 16 43 H 0.21 1.68 8.06 -2.91 -0.02 1.66 16 44 H 0.08 2.30 8.14 -2.38 -0.02 2.28 16 45 H 0.05 2.41 5.83 -2.39 -0.01 2.39 16 Total: -1.00 -87.96 371.72 -0.49 -88.45 By element: Atomic # 1 Polarization: 34.38 SS G_CDS: -0.24 Total: 34.14 kcal Atomic # 6 Polarization: 6.73 SS G_CDS: 6.12 Total: 12.85 kcal Atomic # 7 Polarization: -134.34 SS G_CDS: -5.55 Total: -139.89 kcal Atomic # 8 Polarization: -50.65 SS G_CDS: -1.54 Total: -52.19 kcal Atomic # 14 Polarization: 52.91 SS G_CDS: 2.03 Total: 54.94 kcal Atomic # 16 Polarization: 3.01 SS G_CDS: -1.31 Total: 1.70 kcal Total: -87.96 -0.49 -88.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001502600457.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.173 kcal (2) G-P(sol) polarization free energy of solvation -87.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds