Wall clock time and date at job start Sat Apr 11 2020 05:39:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.39831 * 126.46039 * 2 1 4 4 C 1.35452 * 107.86505 * 180.29630 * 3 2 1 5 5 N 1.35535 * 108.87434 * 359.74185 * 4 3 2 6 6 H 0.97000 * 125.67917 * 180.02562 * 5 4 3 7 7 C 1.37649 * 108.64160 * 359.97438 * 5 4 3 8 8 C 1.46681 * 126.23374 * 180.02562 * 7 5 4 9 9 O 1.21692 * 119.99627 * 180.02562 * 8 7 5 10 10 N 1.34773 * 119.99868 * 0.02562 * 8 7 5 11 11 C 1.46500 * 119.99910 * 179.97438 * 10 8 7 12 12 H 1.09001 * 109.47297 * 34.99871 * 11 10 8 13 13 C 1.53006 * 109.46998 * 275.00232 * 11 10 8 14 14 C 1.52997 * 109.47007 * 155.00372 * 11 10 8 15 15 N 1.46503 * 109.47014 * 304.99673 * 14 11 10 16 16 C 1.46489 * 120.00390 * 270.00017 * 15 14 11 17 17 C 1.34784 * 119.99434 * 90.00400 * 15 14 11 18 18 O 1.21276 * 119.99867 * 359.97438 * 17 15 14 19 19 C 1.50695 * 119.99482 * 179.97438 * 17 15 14 20 20 S 1.81006 * 109.46918 * 179.97438 * 19 17 15 21 21 C 1.76202 * 99.99828 * 180.02562 * 20 19 17 22 22 H 1.07996 * 119.99994 * 359.97438 * 21 20 19 23 23 C 1.38795 * 119.99746 * 180.02562 * 21 20 19 24 24 N 1.31633 * 120.00290 * 0.02562 * 23 21 20 25 25 Si 1.86797 * 120.00102 * 179.97438 * 23 21 20 26 26 H 1.48507 * 109.47271 * 90.00094 * 25 23 21 27 27 H 1.48499 * 109.47386 * 209.99931 * 25 23 21 28 28 H 1.48497 * 109.47196 * 330.00116 * 25 23 21 29 29 H 1.08995 * 109.47182 * 270.14422 * 1 2 3 30 30 H 1.09001 * 109.46687 * 30.13889 * 1 2 3 31 31 H 1.09004 * 109.47400 * 150.14124 * 1 2 3 32 32 H 1.08004 * 126.06833 * 0.02562 * 3 2 1 33 33 H 1.08008 * 125.56628 * 179.70568 * 4 3 2 34 34 H 0.96995 * 119.99797 * 0.02562 * 10 8 7 35 35 H 1.09001 * 109.47002 * 179.97438 * 13 11 10 36 36 H 1.08993 * 109.46955 * 300.00226 * 13 11 10 37 37 H 1.09000 * 109.47050 * 60.00054 * 13 11 10 38 38 H 1.08998 * 109.47192 * 65.00173 * 14 11 10 39 39 H 1.08998 * 109.46934 * 185.00019 * 14 11 10 40 40 H 1.09002 * 109.47110 * 90.00147 * 16 15 14 41 41 H 1.08996 * 109.47485 * 210.00026 * 16 15 14 42 42 H 1.09004 * 109.47170 * 330.00251 * 16 15 14 43 43 H 1.08994 * 109.47423 * 299.99901 * 19 17 15 44 44 H 1.08998 * 109.47124 * 60.00170 * 19 17 15 45 45 H 0.96997 * 120.00413 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3379 1.1246 0.0000 4 6 3.6217 0.6927 -0.0067 5 7 3.6283 -0.6626 -0.0051 6 1 4.4190 -1.2245 -0.0085 7 6 2.3263 -1.1090 0.0033 8 6 1.8898 -2.5093 0.0082 9 8 0.7026 -2.7765 0.0151 10 7 2.8036 -3.5000 0.0049 11 6 2.3676 -4.8986 0.0103 12 1 1.4524 -4.9962 -0.5736 13 6 2.1041 -5.3451 1.4499 14 6 3.4605 -5.7758 -0.6038 15 7 3.7969 -5.2740 -1.9384 16 6 3.0774 -5.7746 -3.1121 17 6 4.7686 -4.3517 -2.0863 18 8 5.3640 -3.9370 -1.1145 19 6 5.1151 -3.8359 -3.4592 20 16 6.4474 -2.6177 -3.3275 21 6 6.6437 -2.1942 -5.0266 22 1 6.0235 -2.6642 -5.7754 23 6 7.5962 -1.2572 -5.4026 24 7 8.3531 -0.6854 -4.4901 25 14 7.8049 -0.8087 -7.2039 26 1 6.9129 0.3311 -7.5368 27 1 9.2163 -0.4232 -7.4578 28 1 7.4512 -1.9773 -8.0492 29 1 -0.3633 0.0026 1.0276 30 1 -0.3633 0.8888 -0.5160 31 1 -0.3634 -0.8913 -0.5116 32 1 2.0137 2.1548 0.0004 33 1 4.4973 1.3251 -0.0129 34 1 3.7498 -3.2869 -0.0003 35 1 1.7793 -6.3856 1.4539 36 1 3.0192 -5.2475 2.0338 37 1 1.3256 -4.7202 1.8874 38 1 4.3473 -5.7477 0.0293 39 1 3.1017 -6.8021 -0.6813 40 1 2.2038 -5.1494 -3.2967 41 1 3.7349 -5.7458 -3.9810 42 1 2.7580 -6.8011 -2.9320 43 1 5.4412 -4.6649 -4.0872 44 1 4.2372 -3.3670 -3.9034 45 1 9.0190 -0.0309 -4.7529 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001510455560.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:05 Heat of formation + Delta-G solvation = -33.990866 kcal Electronic energy + Delta-G solvation = -27914.529363 eV Core-core repulsion = 24058.898494 eV Total energy + Delta-G solvation = -3855.630869 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.17649 -40.03595 -38.75637 -36.24226 -34.75423 -32.51629 -32.46875 -31.48237 -29.70596 -29.13473 -27.38067 -26.67357 -25.77019 -25.30481 -22.97297 -21.20884 -20.28594 -19.63101 -19.00024 -18.42668 -17.74847 -16.82865 -16.42858 -15.96935 -15.77215 -15.07029 -14.96632 -14.87914 -14.18607 -13.96235 -13.82332 -13.57080 -13.40279 -13.27571 -13.09094 -12.84318 -12.79206 -12.60881 -12.53755 -12.43303 -12.31625 -12.10914 -11.97445 -11.83378 -11.45866 -11.25923 -11.13769 -11.10345 -10.83276 -9.90234 -9.83344 -9.61422 -9.15098 -9.13984 -8.68454 -8.59679 -8.38490 -7.97119 -6.61768 -6.31236 -4.02416 1.64721 2.72973 2.80712 2.92087 3.16917 3.17389 3.23183 3.25481 3.38450 3.49251 3.54758 4.11851 4.61323 4.67338 4.95142 5.00699 5.05066 5.06421 5.14918 5.23559 5.26023 5.32732 5.35500 5.44740 5.47909 5.49830 5.58517 5.63227 5.77031 5.84609 5.88256 5.95680 6.01475 6.03175 6.10160 6.23213 6.36516 6.50147 6.59743 6.89929 7.13349 7.31459 7.51463 7.54664 7.70392 8.26145 8.27062 8.34734 9.15228 10.76207 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.009854 B = 0.004094 C = 0.003200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2840.939284 B = 6837.446403 C = 8748.315793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C -0.079 4.079 3 C -0.220 4.220 4 C 0.039 3.961 5 N -0.530 5.530 6 H 0.423 0.577 7 C -0.066 4.066 8 C 0.592 3.408 9 O -0.540 6.540 10 N -0.724 5.724 11 C 0.128 3.872 12 H 0.089 0.911 13 C -0.161 4.161 14 C 0.105 3.895 15 N -0.619 5.619 16 C 0.078 3.922 17 C 0.542 3.458 18 O -0.530 6.530 19 C -0.153 4.153 20 S -0.060 6.060 21 C -0.535 4.535 22 H 0.072 0.928 23 C 0.076 3.924 24 N -0.868 5.868 25 Si 0.918 3.082 26 H -0.276 1.276 27 H -0.281 1.281 28 H -0.272 1.272 29 H 0.062 0.938 30 H 0.059 0.941 31 H 0.077 0.923 32 H 0.140 0.860 33 H 0.172 0.828 34 H 0.407 0.593 35 H 0.066 0.934 36 H 0.059 0.941 37 H 0.065 0.935 38 H 0.090 0.910 39 H 0.092 0.908 40 H 0.056 0.944 41 H 0.076 0.924 42 H 0.071 0.929 43 H 0.091 0.909 44 H 0.089 0.911 45 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.269 -6.838 9.005 16.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.088 4.088 3 C -0.244 4.244 4 C -0.099 4.099 5 N -0.125 5.125 6 H 0.261 0.739 7 C -0.179 4.179 8 C 0.381 3.619 9 O -0.418 6.418 10 N -0.380 5.380 11 C 0.022 3.978 12 H 0.107 0.893 13 C -0.220 4.220 14 C -0.018 4.018 15 N -0.354 5.354 16 C -0.065 4.065 17 C 0.331 3.669 18 O -0.406 6.406 19 C -0.304 4.304 20 S 0.166 5.834 21 C -0.683 4.683 22 H 0.090 0.910 23 C -0.134 4.134 24 N -0.503 5.503 25 Si 0.744 3.256 26 H -0.202 1.202 27 H -0.207 1.207 28 H -0.197 1.197 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.096 0.904 32 H 0.158 0.842 33 H 0.189 0.811 34 H 0.246 0.754 35 H 0.085 0.915 36 H 0.078 0.922 37 H 0.084 0.916 38 H 0.109 0.891 39 H 0.110 0.890 40 H 0.074 0.926 41 H 0.095 0.905 42 H 0.089 0.911 43 H 0.109 0.891 44 H 0.108 0.892 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -11.952 -6.484 10.454 17.151 hybrid contribution 0.410 -0.307 -2.454 2.507 sum -11.542 -6.791 8.000 15.599 Atomic orbital electron populations 1.20286 0.89657 1.02601 1.01728 1.19873 0.95584 0.90864 1.02459 1.20736 0.91842 0.98582 1.13257 1.22085 0.99594 0.83121 1.05073 1.42080 1.07410 1.07516 1.55530 0.73867 1.20145 0.84051 0.93349 1.20372 1.17087 0.85728 0.83283 0.75819 1.90748 1.16095 1.83548 1.51416 1.46231 1.10765 1.05590 1.75415 1.21381 0.98500 0.80927 0.97003 0.89288 1.22128 1.02447 1.01569 0.95862 1.21843 0.98773 0.97074 0.84143 1.47840 1.37476 1.42796 1.07279 1.21830 0.97165 0.99311 0.88183 1.20360 0.77648 0.77559 0.91352 1.90552 1.51403 1.57659 1.41033 1.23581 1.06118 1.04837 0.95825 1.85158 1.39648 1.46555 1.11994 1.22833 1.24408 1.28836 0.92244 0.90962 1.24964 0.94642 0.95013 0.98734 1.69996 1.20732 1.26337 1.33247 0.86181 0.77674 0.78907 0.82864 1.20182 1.20691 1.19661 0.91961 0.92243 0.90432 0.84186 0.81115 0.75397 0.91493 0.92212 0.91628 0.89143 0.88985 0.92559 0.90494 0.91058 0.89104 0.89248 0.92148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.15 9.82 36.00 0.35 -0.80 16 2 C -0.08 -1.20 6.21 -104.16 -0.65 -1.85 16 3 C -0.22 -3.03 10.76 -39.98 -0.43 -3.46 16 4 C 0.04 0.53 11.89 -16.91 -0.20 0.33 16 5 N -0.53 -7.88 5.99 -9.39 -0.06 -7.94 16 6 H 0.42 6.18 8.19 -40.82 -0.33 5.85 16 7 C -0.07 -1.06 7.06 -81.98 -0.58 -1.64 16 8 C 0.59 9.55 7.75 -12.85 -0.10 9.45 16 9 O -0.54 -9.51 14.47 5.20 0.08 -9.44 16 10 N -0.72 -10.25 4.47 -55.11 -0.25 -10.50 16 11 C 0.13 1.47 2.88 -67.93 -0.20 1.28 16 12 H 0.09 1.10 7.58 -51.93 -0.39 0.71 16 13 C -0.16 -1.56 9.48 37.16 0.35 -1.21 16 14 C 0.11 1.10 5.19 -4.04 -0.02 1.08 16 15 N -0.62 -7.84 2.77 -181.58 -0.50 -8.35 16 16 C 0.08 0.77 10.29 59.84 0.62 1.39 16 17 C 0.54 9.13 6.99 -10.98 -0.08 9.06 16 18 O -0.53 -9.99 13.18 5.56 0.07 -9.92 16 19 C -0.15 -2.92 4.71 36.00 0.17 -2.76 16 20 S -0.06 -1.52 20.57 -107.50 -2.21 -3.73 16 21 C -0.54 -14.68 9.50 30.94 0.29 -14.39 16 22 H 0.07 1.90 7.80 -52.49 -0.41 1.49 16 23 C 0.08 2.09 5.49 -17.43 -0.10 1.99 16 24 N -0.87 -25.13 13.22 55.49 0.73 -24.40 16 25 Si 0.92 20.91 29.55 -169.99 -5.02 15.88 16 26 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 27 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 28 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 29 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.08 1.15 6.49 -51.93 -0.34 0.82 16 32 H 0.14 1.60 8.06 -52.48 -0.42 1.18 16 33 H 0.17 1.88 8.06 -52.48 -0.42 1.46 16 34 H 0.41 6.10 4.95 -40.82 -0.20 5.90 16 35 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 37 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.09 1.04 7.42 -51.93 -0.39 0.65 16 39 H 0.09 0.67 7.89 -51.93 -0.41 0.26 16 40 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.08 0.77 6.44 -51.93 -0.33 0.44 16 42 H 0.07 0.50 7.89 -51.93 -0.41 0.09 16 43 H 0.09 1.62 7.40 -51.92 -0.38 1.24 16 44 H 0.09 1.67 8.11 -51.92 -0.42 1.25 16 45 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 387.02 15.07 5.83 5.83 Total: -1.00 -33.46 387.02 -8.43 -41.89 By element: Atomic # 1 Polarization: 18.72 SS G_CDS: -6.54 Total: 12.19 kcal Atomic # 6 Polarization: -0.96 SS G_CDS: -0.56 Total: -1.52 kcal Atomic # 7 Polarization: -51.11 SS G_CDS: -0.07 Total: -51.19 kcal Atomic # 8 Polarization: -19.50 SS G_CDS: 0.15 Total: -19.36 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.88 kcal Atomic # 16 Polarization: -1.52 SS G_CDS: -2.21 Total: -3.73 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -33.46 -8.43 -41.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001510455560.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.900 kcal (2) G-P(sol) polarization free energy of solvation -33.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds