Wall clock time and date at job start Sat Apr 11 2020 05:39:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.39831 * 126.46039 * 2 1 4 4 C 1.35452 * 107.86505 * 180.29630 * 3 2 1 5 5 N 1.35535 * 108.87434 * 359.74185 * 4 3 2 6 6 H 0.97000 * 125.67917 * 180.02562 * 5 4 3 7 7 C 1.37649 * 108.64160 * 359.97438 * 5 4 3 8 8 C 1.46681 * 126.23374 * 180.02562 * 7 5 4 9 9 O 1.21692 * 119.99627 * 180.02562 * 8 7 5 10 10 N 1.34773 * 119.99868 * 0.02562 * 8 7 5 11 11 C 1.46500 * 119.99910 * 179.97438 * 10 8 7 12 12 H 1.09001 * 109.47297 * 34.99871 * 11 10 8 13 13 C 1.53006 * 109.46998 * 275.00232 * 11 10 8 14 14 C 1.52997 * 109.47007 * 155.00372 * 11 10 8 15 15 N 1.46503 * 109.47014 * 304.99673 * 14 11 10 16 16 C 1.46489 * 120.00390 * 270.00017 * 15 14 11 17 17 C 1.34784 * 119.99434 * 90.00400 * 15 14 11 18 18 O 1.21276 * 119.99867 * 359.97438 * 17 15 14 19 19 C 1.50695 * 119.99482 * 179.97438 * 17 15 14 20 20 S 1.81006 * 109.46918 * 179.97438 * 19 17 15 21 21 C 1.76202 * 99.99828 * 180.02562 * 20 19 17 22 22 H 1.07996 * 119.99994 * 359.97438 * 21 20 19 23 23 C 1.38795 * 119.99746 * 180.02562 * 21 20 19 24 24 N 1.31633 * 120.00290 * 0.02562 * 23 21 20 25 25 Si 1.86797 * 120.00102 * 179.97438 * 23 21 20 26 26 H 1.48507 * 109.47271 * 90.00094 * 25 23 21 27 27 H 1.48499 * 109.47386 * 209.99931 * 25 23 21 28 28 H 1.48497 * 109.47196 * 330.00116 * 25 23 21 29 29 H 1.08995 * 109.47182 * 270.14422 * 1 2 3 30 30 H 1.09001 * 109.46687 * 30.13889 * 1 2 3 31 31 H 1.09004 * 109.47400 * 150.14124 * 1 2 3 32 32 H 1.08004 * 126.06833 * 0.02562 * 3 2 1 33 33 H 1.08008 * 125.56628 * 179.70568 * 4 3 2 34 34 H 0.96995 * 119.99797 * 0.02562 * 10 8 7 35 35 H 1.09001 * 109.47002 * 179.97438 * 13 11 10 36 36 H 1.08993 * 109.46955 * 300.00226 * 13 11 10 37 37 H 1.09000 * 109.47050 * 60.00054 * 13 11 10 38 38 H 1.08998 * 109.47192 * 65.00173 * 14 11 10 39 39 H 1.08998 * 109.46934 * 185.00019 * 14 11 10 40 40 H 1.09002 * 109.47110 * 90.00147 * 16 15 14 41 41 H 1.08996 * 109.47485 * 210.00026 * 16 15 14 42 42 H 1.09004 * 109.47170 * 330.00251 * 16 15 14 43 43 H 1.08994 * 109.47423 * 299.99901 * 19 17 15 44 44 H 1.08998 * 109.47124 * 60.00170 * 19 17 15 45 45 H 0.96997 * 120.00413 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3379 1.1246 0.0000 4 6 3.6217 0.6927 -0.0067 5 7 3.6283 -0.6626 -0.0051 6 1 4.4190 -1.2245 -0.0085 7 6 2.3263 -1.1090 0.0033 8 6 1.8898 -2.5093 0.0082 9 8 0.7026 -2.7765 0.0151 10 7 2.8036 -3.5000 0.0049 11 6 2.3676 -4.8986 0.0103 12 1 1.4524 -4.9962 -0.5736 13 6 2.1041 -5.3451 1.4499 14 6 3.4605 -5.7758 -0.6038 15 7 3.7969 -5.2740 -1.9384 16 6 3.0774 -5.7746 -3.1121 17 6 4.7686 -4.3517 -2.0863 18 8 5.3640 -3.9370 -1.1145 19 6 5.1151 -3.8359 -3.4592 20 16 6.4474 -2.6177 -3.3275 21 6 6.6437 -2.1942 -5.0266 22 1 6.0235 -2.6642 -5.7754 23 6 7.5962 -1.2572 -5.4026 24 7 8.3531 -0.6854 -4.4901 25 14 7.8049 -0.8087 -7.2039 26 1 6.9129 0.3311 -7.5368 27 1 9.2163 -0.4232 -7.4578 28 1 7.4512 -1.9773 -8.0492 29 1 -0.3633 0.0026 1.0276 30 1 -0.3633 0.8888 -0.5160 31 1 -0.3634 -0.8913 -0.5116 32 1 2.0137 2.1548 0.0004 33 1 4.4973 1.3251 -0.0129 34 1 3.7498 -3.2869 -0.0003 35 1 1.7793 -6.3856 1.4539 36 1 3.0192 -5.2475 2.0338 37 1 1.3256 -4.7202 1.8874 38 1 4.3473 -5.7477 0.0293 39 1 3.1017 -6.8021 -0.6813 40 1 2.2038 -5.1494 -3.2967 41 1 3.7349 -5.7458 -3.9810 42 1 2.7580 -6.8011 -2.9320 43 1 5.4412 -4.6649 -4.0872 44 1 4.2372 -3.3670 -3.9034 45 1 9.0190 -0.0309 -4.7529 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001510455560.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:04 Heat of formation + Delta-G solvation = -55.719915 kcal Electronic energy + Delta-G solvation = -27915.471605 eV Core-core repulsion = 24058.898494 eV Total energy + Delta-G solvation = -3856.573111 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -42.30705 -41.20480 -39.97268 -37.38141 -35.86576 -34.59944 -33.56578 -32.58281 -31.04726 -30.23029 -28.29643 -27.77862 -27.70202 -26.47688 -24.06120 -22.26988 -21.38563 -20.85546 -20.22169 -19.62921 -19.46112 -18.10070 -17.53696 -17.13134 -16.95741 -16.88863 -16.26967 -16.20077 -15.82319 -15.10746 -14.91445 -14.74804 -14.58421 -14.49855 -14.48596 -14.03138 -13.80192 -13.61147 -13.59118 -13.54869 -13.35767 -13.19376 -13.17692 -12.98704 -12.91603 -12.74412 -12.61561 -12.53535 -12.17212 -11.73807 -11.16136 -11.05235 -10.94502 -10.31915 -10.26481 -9.73918 -9.71253 -9.11768 -8.65752 -8.37270 -6.13010 0.46540 1.23453 1.39341 1.42702 1.46297 1.53738 1.81922 2.01166 2.17690 2.24979 2.29270 2.34289 2.97576 3.23293 3.66055 3.70895 3.91652 4.08797 4.14122 4.19594 4.22867 4.24816 4.33495 4.37379 4.43956 4.47548 4.61303 4.67177 4.76767 4.85987 4.88975 4.90146 4.94680 5.01372 5.16628 5.21423 5.37799 5.40174 5.43681 5.55859 5.78589 6.02016 6.16380 6.18391 6.40128 6.53804 7.02960 7.05592 7.13205 8.71279 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.009854 B = 0.004094 C = 0.003200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2840.939284 B = 6837.446403 C = 8748.315793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.094 4.094 3 C -0.224 4.224 4 C 0.035 3.965 5 N -0.534 5.534 6 H 0.420 0.580 7 C -0.096 4.096 8 C 0.586 3.414 9 O -0.563 6.563 10 N -0.722 5.722 11 C 0.124 3.876 12 H 0.084 0.916 13 C -0.153 4.153 14 C 0.107 3.893 15 N -0.608 5.608 16 C 0.070 3.930 17 C 0.539 3.461 18 O -0.556 6.556 19 C -0.132 4.132 20 S -0.124 6.124 21 C -0.551 4.551 22 H 0.076 0.924 23 C 0.022 3.978 24 N -0.906 5.906 25 Si 0.989 3.011 26 H -0.270 1.270 27 H -0.276 1.276 28 H -0.261 1.261 29 H 0.070 0.930 30 H 0.078 0.922 31 H 0.059 0.941 32 H 0.165 0.835 33 H 0.195 0.805 34 H 0.403 0.597 35 H 0.098 0.902 36 H 0.060 0.940 37 H 0.045 0.955 38 H 0.082 0.918 39 H 0.137 0.863 40 H 0.055 0.945 41 H 0.074 0.926 42 H 0.110 0.890 43 H 0.104 0.896 44 H 0.092 0.908 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.218 -8.016 8.197 17.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.103 4.103 3 C -0.247 4.247 4 C -0.103 4.103 5 N -0.129 5.129 6 H 0.258 0.742 7 C -0.208 4.208 8 C 0.376 3.624 9 O -0.443 6.443 10 N -0.376 5.376 11 C 0.019 3.981 12 H 0.102 0.898 13 C -0.212 4.212 14 C -0.016 4.016 15 N -0.341 5.341 16 C -0.072 4.072 17 C 0.327 3.673 18 O -0.435 6.435 19 C -0.283 4.283 20 S 0.103 5.897 21 C -0.699 4.699 22 H 0.094 0.906 23 C -0.184 4.184 24 N -0.542 5.542 25 Si 0.811 3.189 26 H -0.195 1.195 27 H -0.201 1.201 28 H -0.185 1.185 29 H 0.088 0.912 30 H 0.097 0.903 31 H 0.078 0.922 32 H 0.182 0.818 33 H 0.212 0.788 34 H 0.241 0.759 35 H 0.117 0.883 36 H 0.079 0.921 37 H 0.064 0.936 38 H 0.101 0.899 39 H 0.155 0.845 40 H 0.073 0.927 41 H 0.093 0.907 42 H 0.128 0.872 43 H 0.123 0.877 44 H 0.111 0.889 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -12.929 -7.712 9.648 17.880 hybrid contribution 0.632 -0.007 -2.153 2.244 sum -12.296 -7.719 7.494 16.339 Atomic orbital electron populations 1.20271 0.88666 1.02609 1.02245 1.20294 0.96590 0.91261 1.02131 1.21074 0.91552 0.99406 1.12717 1.22627 1.00714 0.82869 1.04053 1.42139 1.07036 1.08024 1.55724 0.74159 1.20372 0.84704 0.93822 1.21923 1.17208 0.85693 0.83781 0.75748 1.90719 1.16799 1.83939 1.52840 1.46333 1.10187 1.06536 1.74542 1.21605 0.98552 0.79685 0.98297 0.89828 1.22063 1.01884 1.02978 0.94257 1.22073 0.98141 0.98816 0.82522 1.47834 1.35931 1.41070 1.09240 1.22094 0.96668 1.01413 0.86998 1.19992 0.78876 0.78572 0.89893 1.90548 1.52847 1.58892 1.41249 1.23412 1.03527 1.03295 0.98069 1.85189 1.43072 1.49464 1.12006 1.23180 1.24611 1.29093 0.92998 0.90619 1.25959 0.94170 0.94787 1.03480 1.70132 1.21467 1.27049 1.35565 0.85089 0.77799 0.78900 0.77088 1.19523 1.20122 1.18499 0.91159 0.90291 0.92233 0.81758 0.78792 0.75860 0.88333 0.92108 0.93592 0.89945 0.84494 0.92651 0.90680 0.87167 0.87742 0.88942 0.91966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.15 9.82 71.23 0.70 -1.45 16 2 C -0.09 -2.86 6.21 -19.56 -0.12 -2.98 16 3 C -0.22 -6.01 10.76 22.01 0.24 -5.77 16 4 C 0.03 0.94 11.89 83.48 0.99 1.93 16 5 N -0.53 -16.33 5.99 -183.61 -1.10 -17.43 16 6 H 0.42 12.93 8.19 -92.71 -0.76 12.17 16 7 C -0.10 -3.15 7.06 40.35 0.28 -2.86 16 8 C 0.59 19.37 7.75 86.45 0.67 20.04 16 9 O -0.56 -20.25 14.47 -4.32 -0.06 -20.31 16 10 N -0.72 -20.56 4.47 -446.49 -2.00 -22.56 16 11 C 0.12 2.68 2.88 44.99 0.13 2.81 16 12 H 0.08 1.94 7.58 -2.39 -0.02 1.92 16 13 C -0.15 -2.73 9.48 71.98 0.68 -2.04 16 14 C 0.11 1.97 5.19 86.38 0.45 2.41 16 15 N -0.61 -14.19 2.77 -846.79 -2.35 -16.54 16 16 C 0.07 1.18 10.29 127.77 1.31 2.50 16 17 C 0.54 17.89 6.99 87.65 0.61 18.50 16 18 O -0.56 -21.21 13.18 -3.02 -0.04 -21.25 16 19 C -0.13 -5.01 4.71 71.23 0.34 -4.68 16 20 S -0.12 -6.42 20.57 -56.49 -1.16 -7.58 16 21 C -0.55 -30.48 9.50 67.95 0.65 -29.84 16 22 H 0.08 3.97 7.80 -2.91 -0.02 3.95 16 23 C 0.02 1.19 5.49 84.86 0.47 1.65 16 24 N -0.91 -53.27 13.22 21.65 0.29 -52.98 16 25 Si 0.99 42.65 29.55 68.60 2.03 44.67 16 26 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 27 H -0.28 -11.56 7.11 99.48 0.71 -10.85 16 28 H -0.26 -10.67 7.11 99.48 0.71 -9.96 16 29 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 30 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 31 H 0.06 1.80 6.49 -2.38 -0.02 1.78 16 32 H 0.16 3.46 8.06 -2.91 -0.02 3.44 16 33 H 0.20 4.14 8.06 -2.91 -0.02 4.12 16 34 H 0.40 12.34 4.95 -92.71 -0.46 11.88 16 35 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 36 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 38 H 0.08 1.73 7.42 -2.39 -0.02 1.71 16 39 H 0.14 1.35 7.89 -2.39 -0.02 1.33 16 40 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 41 H 0.07 1.32 6.44 -2.39 -0.02 1.30 16 42 H 0.11 1.05 7.89 -2.38 -0.02 1.03 16 43 H 0.10 3.65 7.40 -2.40 -0.02 3.63 16 44 H 0.09 3.43 8.11 -2.40 -0.02 3.41 16 45 H 0.27 14.86 8.31 -92.71 -0.77 14.09 16 Total: -1.00 -74.68 387.02 2.80 -71.88 By element: Atomic # 1 Polarization: 42.09 SS G_CDS: -0.20 Total: 41.89 kcal Atomic # 6 Polarization: -7.17 SS G_CDS: 7.40 Total: 0.22 kcal Atomic # 7 Polarization: -104.35 SS G_CDS: -5.16 Total: -109.52 kcal Atomic # 8 Polarization: -41.46 SS G_CDS: -0.10 Total: -41.56 kcal Atomic # 14 Polarization: 42.65 SS G_CDS: 2.03 Total: 44.67 kcal Atomic # 16 Polarization: -6.42 SS G_CDS: -1.16 Total: -7.58 kcal Total: -74.68 2.80 -71.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001510455560.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.155 kcal (2) G-P(sol) polarization free energy of solvation -74.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds