Wall clock time and date at job start Sat Apr 11 2020 05:39:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 S 1.75882 * 125.20569 * 2 1 4 4 C 1.75880 * 90.96978 * 180.02562 * 3 2 1 5 5 C 1.33388 * 109.59672 * 359.72798 * 4 3 2 6 6 C 1.33390 * 125.20389 * 180.02562 * 2 1 3 7 7 C 1.50701 * 122.53580 * 359.97438 * 6 2 1 8 8 C 1.50703 * 109.47355 * 85.00027 * 7 6 2 9 9 O 1.21283 * 119.99488 * 359.97438 * 8 7 6 10 10 N 1.34777 * 120.00290 * 180.02562 * 8 7 6 11 11 C 1.46498 * 119.99828 * 180.27728 * 10 8 7 12 12 H 1.08995 * 109.47013 * 324.72129 * 11 10 8 13 13 C 1.52999 * 109.47257 * 84.72116 * 11 10 8 14 14 C 1.53004 * 109.47065 * 204.72115 * 11 10 8 15 15 N 1.46903 * 109.46973 * 54.99676 * 14 11 10 16 16 C 1.46896 * 111.00028 * 180.02562 * 15 14 11 17 17 C 1.50699 * 109.47190 * 180.02562 * 16 15 14 18 18 O 1.21291 * 119.99912 * 0.02562 * 17 16 15 19 19 N 1.34769 * 119.99930 * 179.97438 * 17 16 15 20 20 C 1.37099 * 119.99971 * 179.97438 * 19 17 16 21 21 H 1.07997 * 119.99994 * 0.02562 * 20 19 17 22 22 C 1.38956 * 120.00034 * 180.02562 * 20 19 17 23 23 N 1.31418 * 119.99940 * 179.97438 * 22 20 19 24 24 Si 1.86801 * 119.99992 * 0.02562 * 22 20 19 25 25 H 1.48503 * 109.47066 * 89.99970 * 24 22 20 26 26 H 1.48500 * 109.46977 * 210.00051 * 24 22 20 27 27 H 1.48495 * 109.47230 * 329.99625 * 24 22 20 28 28 H 1.09000 * 109.47130 * 269.98118 * 1 2 3 29 29 H 1.08999 * 109.46895 * 29.97815 * 1 2 3 30 30 H 1.09000 * 109.47443 * 149.97974 * 1 2 3 31 31 H 1.08006 * 125.20056 * 180.02562 * 4 3 2 32 32 H 1.08000 * 122.54040 * 180.24497 * 5 4 3 33 33 H 1.08998 * 109.47477 * 324.99873 * 7 6 2 34 34 H 1.09002 * 109.47412 * 205.00132 * 7 6 2 35 35 H 0.97001 * 119.99727 * 359.97438 * 10 8 7 36 36 H 1.08995 * 109.47098 * 60.00065 * 13 11 10 37 37 H 1.09003 * 109.47054 * 179.97438 * 13 11 10 38 38 H 1.08996 * 109.47245 * 299.99926 * 13 11 10 39 39 H 1.08997 * 109.47038 * 174.99692 * 14 11 10 40 40 H 1.08999 * 109.47047 * 295.00318 * 14 11 10 41 41 H 1.00906 * 110.99926 * 56.04584 * 15 14 11 42 42 H 1.09001 * 109.46867 * 300.00094 * 16 15 14 43 43 H 1.08992 * 109.47029 * 60.00008 * 16 15 14 44 44 H 0.97002 * 120.00702 * 359.97438 * 19 17 16 45 45 H 0.96998 * 119.99422 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.5210 1.4371 0.0000 4 6 3.9750 0.4476 -0.0008 5 6 3.6379 -0.8430 0.0050 6 6 2.2760 -1.0899 -0.0005 7 6 1.7051 -2.4846 -0.0005 8 6 1.3997 -2.9024 -1.4159 9 8 1.6231 -2.1422 -2.3341 10 7 0.8773 -4.1204 -1.6613 11 6 0.5861 -4.5287 -3.0377 12 1 0.2459 -3.6648 -3.6087 13 6 1.8529 -5.0977 -3.6798 14 6 -0.5075 -5.5988 -3.0317 15 7 -1.6828 -5.0938 -2.3093 16 6 -2.7554 -6.0971 -2.2826 17 6 -3.9418 -5.5443 -1.5356 18 8 -3.8981 -4.4245 -1.0716 19 7 -5.0516 -6.2937 -1.3841 20 6 -6.1306 -5.7910 -0.7040 21 1 -6.0915 -4.7943 -0.2901 22 6 -7.2747 -6.5640 -0.5473 23 7 -8.3089 -6.0823 0.1050 24 14 -7.3421 -8.2883 -1.2627 25 1 -6.8474 -9.2615 -0.2560 26 1 -8.7438 -8.6196 -1.6244 27 1 -6.4890 -8.3544 -2.4763 28 1 -0.3633 -0.0003 1.0277 29 1 -0.3633 0.8902 -0.5135 30 1 -0.3634 -0.8898 -0.5141 31 1 4.9863 0.8270 -0.0007 32 1 4.3720 -1.6351 0.0095 33 1 0.7886 -2.5022 0.5892 34 1 2.4295 -3.1738 0.4334 35 1 0.6982 -4.7282 -0.9268 36 1 2.1930 -5.9616 -3.1088 37 1 1.6361 -5.4020 -4.7038 38 1 2.6319 -4.3354 -3.6841 39 1 -0.7869 -5.8385 -4.0576 40 1 -0.1351 -6.4960 -2.5373 41 1 -2.0082 -4.2266 -2.7096 42 1 -3.0505 -6.3407 -3.3033 43 1 -2.3984 -6.9975 -1.7829 44 1 -5.0870 -7.1889 -1.7562 45 1 -9.1073 -6.6220 0.2146 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569085083.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:26 Heat of formation + Delta-G solvation = -42.131177 kcal Electronic energy + Delta-G solvation = -26453.882682 eV Core-core repulsion = 22597.898823 eV Total energy + Delta-G solvation = -3855.983860 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.09949 -38.60818 -38.13312 -36.56059 -34.33599 -33.72640 -32.37425 -31.70678 -31.42561 -29.61390 -27.78825 -25.78841 -25.03152 -23.24593 -22.87273 -21.55289 -20.47262 -19.41540 -18.52891 -18.32147 -17.26047 -17.13772 -16.70802 -15.91070 -15.56595 -15.15429 -14.99965 -14.89320 -14.38170 -14.23141 -13.97887 -13.60131 -13.53634 -13.24499 -13.21791 -12.87883 -12.71621 -12.62794 -12.51596 -12.25489 -12.11681 -12.08468 -11.82638 -11.73392 -11.70408 -11.56383 -11.19046 -10.99544 -10.80671 -10.62743 -10.00743 -9.82961 -9.60506 -9.03138 -8.64549 -8.61048 -8.44985 -8.25161 -8.19900 -6.34087 -3.85673 0.92987 1.54803 1.90064 2.52117 2.71868 2.99352 3.03848 3.12416 3.32105 3.70180 4.00043 4.07563 4.65061 4.70008 4.75302 4.80044 4.93730 4.98418 5.09452 5.17358 5.22436 5.23703 5.33557 5.36495 5.45210 5.50117 5.52415 5.54909 5.55411 5.57980 5.75118 5.87124 5.87883 5.94541 5.99368 6.01635 6.29240 6.42895 6.51462 6.98978 7.46932 7.54871 7.58641 8.11238 8.31013 8.56376 8.91844 9.39165 9.79063 10.78986 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.014988 B = 0.002239 C = 0.001997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1867.724591 B =12502.598662 C =14016.269105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C -0.152 4.152 3 S 0.087 5.913 4 C -0.222 4.222 5 C -0.115 4.115 6 C -0.095 4.095 7 C -0.083 4.083 8 C 0.518 3.482 9 O -0.538 6.538 10 N -0.710 5.710 11 C 0.146 3.854 12 H 0.085 0.915 13 C -0.161 4.161 14 C 0.048 3.952 15 N -0.666 5.666 16 C 0.048 3.952 17 C 0.449 3.551 18 O -0.564 6.564 19 N -0.590 5.590 20 C -0.305 4.305 21 H 0.120 0.880 22 C 0.041 3.959 23 N -0.881 5.881 24 Si 0.880 3.120 25 H -0.270 1.270 26 H -0.277 1.277 27 H -0.270 1.270 28 H 0.077 0.923 29 H 0.069 0.931 30 H 0.080 0.920 31 H 0.161 0.839 32 H 0.136 0.864 33 H 0.106 0.894 34 H 0.100 0.900 35 H 0.405 0.595 36 H 0.057 0.943 37 H 0.064 0.936 38 H 0.062 0.938 39 H 0.042 0.958 40 H 0.077 0.923 41 H 0.352 0.648 42 H 0.044 0.956 43 H 0.087 0.913 44 H 0.370 0.630 45 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.153 3.345 -3.115 24.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.269 4.269 3 S 0.352 5.648 4 C -0.357 4.357 5 C -0.146 4.146 6 C -0.107 4.107 7 C -0.125 4.125 8 C 0.303 3.697 9 O -0.415 6.415 10 N -0.362 5.362 11 C 0.041 3.959 12 H 0.103 0.897 13 C -0.220 4.220 14 C -0.082 4.082 15 N -0.299 5.299 16 C -0.085 4.085 17 C 0.235 3.765 18 O -0.446 6.446 19 N -0.230 5.230 20 C -0.434 4.434 21 H 0.137 0.863 22 C -0.162 4.162 23 N -0.521 5.521 24 Si 0.707 3.293 25 H -0.196 1.196 26 H -0.202 1.202 27 H -0.196 1.196 28 H 0.096 0.904 29 H 0.088 0.912 30 H 0.099 0.901 31 H 0.179 0.821 32 H 0.154 0.846 33 H 0.124 0.876 34 H 0.118 0.882 35 H 0.240 0.760 36 H 0.076 0.924 37 H 0.083 0.917 38 H 0.081 0.919 39 H 0.060 0.940 40 H 0.096 0.904 41 H 0.172 0.828 42 H 0.062 0.938 43 H 0.105 0.895 44 H 0.203 0.797 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 24.086 6.048 -2.764 24.987 hybrid contribution -0.328 -3.279 -1.136 3.486 sum 23.757 2.769 -3.901 24.234 Atomic orbital electron populations 1.20386 0.87515 1.03779 1.02815 1.24298 1.00009 0.95017 1.07586 1.84167 0.97117 1.09836 1.73717 1.25392 1.01600 0.96703 1.12022 1.19937 0.95408 0.96441 1.02768 1.18176 0.92748 0.94236 1.05511 1.20352 1.03205 0.93787 0.95147 1.20466 0.76893 0.81275 0.91027 1.90701 1.52450 1.52126 1.46241 1.45833 1.64453 1.16863 1.09032 1.20895 0.94007 0.97498 0.83535 0.89669 1.22135 0.97913 1.01267 1.00646 1.22318 0.91208 0.97555 0.97123 1.60050 1.05823 1.06336 1.57673 1.21713 0.91895 0.95902 0.99005 1.19692 0.83918 0.87169 0.85745 1.90569 1.82114 1.19717 1.52170 1.42210 1.14174 1.15518 1.51082 1.19426 0.90374 1.03311 1.30285 0.86286 1.25051 0.95402 0.98414 0.97333 1.69624 1.04497 1.37455 1.40477 0.86665 0.78552 0.84692 0.79414 1.19591 1.20186 1.19567 0.90430 0.91204 0.90138 0.82144 0.84645 0.87587 0.88219 0.76001 0.92370 0.91740 0.91899 0.93951 0.90446 0.82811 0.93764 0.89465 0.79712 0.91592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.97 9.78 36.01 0.35 -0.62 16 2 C -0.15 -1.80 6.50 -36.00 -0.23 -2.03 16 3 S 0.09 0.92 23.33 -107.50 -2.51 -1.58 16 4 C -0.22 -2.18 11.23 29.04 0.33 -1.85 16 5 C -0.12 -1.19 9.96 -41.21 -0.41 -1.60 16 6 C -0.09 -1.08 4.29 -106.25 -0.46 -1.54 16 7 C -0.08 -0.82 5.34 -29.03 -0.16 -0.97 16 8 C 0.52 6.29 7.53 -10.98 -0.08 6.21 16 9 O -0.54 -8.55 15.70 5.55 0.09 -8.46 16 10 N -0.71 -7.40 4.80 -53.81 -0.26 -7.66 16 11 C 0.15 1.50 2.81 -67.93 -0.19 1.31 16 12 H 0.09 1.06 7.58 -51.93 -0.39 0.67 16 13 C -0.16 -1.39 9.48 37.16 0.35 -1.04 16 14 C 0.05 0.48 5.24 -3.82 -0.02 0.46 16 15 N -0.67 -9.25 5.85 -115.06 -0.67 -9.92 16 16 C 0.05 0.73 6.17 -4.98 -0.03 0.70 16 17 C 0.45 9.78 7.82 -10.99 -0.09 9.69 16 18 O -0.56 -14.63 15.78 5.55 0.09 -14.54 16 19 N -0.59 -13.67 5.09 -10.96 -0.06 -13.72 16 20 C -0.31 -8.49 10.16 -14.93 -0.15 -8.64 16 21 H 0.12 3.80 7.39 -52.49 -0.39 3.41 16 22 C 0.04 1.11 5.50 -17.46 -0.10 1.01 16 23 N -0.88 -25.45 13.96 55.50 0.77 -24.68 16 24 Si 0.88 19.01 27.74 -169.99 -4.71 14.30 16 25 H -0.27 -5.72 7.11 56.52 0.40 -5.31 16 26 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 27 H -0.27 -5.29 6.52 56.52 0.37 -4.93 16 28 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 30 H 0.08 1.01 7.19 -51.93 -0.37 0.64 16 31 H 0.16 1.17 8.06 -52.48 -0.42 0.75 16 32 H 0.14 1.14 8.06 -52.49 -0.42 0.71 16 33 H 0.11 0.99 7.51 -51.93 -0.39 0.60 16 34 H 0.10 0.72 8.11 -51.93 -0.42 0.30 16 35 H 0.41 3.69 8.60 -40.82 -0.35 3.34 16 36 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 37 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 38 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 41 H 0.35 5.46 8.43 -39.29 -0.33 5.13 16 42 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 44 H 0.37 7.49 5.76 -40.82 -0.24 7.26 16 45 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 393.07 15.07 5.92 5.92 Total: -1.00 -34.33 393.07 -8.92 -43.25 By element: Atomic # 1 Polarization: 22.72 SS G_CDS: -6.70 Total: 16.02 kcal Atomic # 6 Polarization: 1.96 SS G_CDS: -0.88 Total: 1.07 kcal Atomic # 7 Polarization: -55.76 SS G_CDS: -0.21 Total: -55.98 kcal Atomic # 8 Polarization: -23.18 SS G_CDS: 0.17 Total: -23.00 kcal Atomic # 14 Polarization: 19.01 SS G_CDS: -4.71 Total: 14.30 kcal Atomic # 16 Polarization: 0.92 SS G_CDS: -2.51 Total: -1.58 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -34.33 -8.92 -43.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569085083.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.119 kcal (2) G-P(sol) polarization free energy of solvation -34.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds