Wall clock time and date at job start Sat Apr 11 2020 05:39:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42904 * 113.99440 * 2 1 4 4 C 1.50706 * 109.46525 * 179.97438 * 3 2 1 5 5 N 1.29431 * 124.80140 * 89.97652 * 4 3 2 6 6 C 1.30946 * 117.35961 * 180.02562 * 5 4 3 7 7 C 1.35665 * 114.19327 * 0.02562 * 6 5 4 8 8 C 1.46682 * 126.12666 * 179.97438 * 7 6 5 9 9 O 1.21680 * 120.00373 * 359.97438 * 8 7 6 10 10 N 1.34778 * 119.99382 * 179.97438 * 8 7 6 11 11 C 1.47019 * 125.65277 * 359.97438 * 10 8 7 12 12 C 1.54321 * 107.27531 * 178.97403 * 11 10 8 13 13 C 1.55157 * 103.10033 * 337.71659 * 12 11 10 14 14 C 1.52994 * 111.00718 * 277.51661 * 13 12 11 15 15 C 1.53000 * 111.00230 * 153.66249 * 13 12 11 16 16 N 1.46509 * 109.46831 * 180.02562 * 15 13 12 17 17 C 1.36936 * 119.99778 * 180.02562 * 16 15 13 18 18 H 1.08003 * 120.00026 * 359.97438 * 17 16 15 19 19 C 1.38814 * 120.00045 * 180.02562 * 17 16 15 20 20 N 1.31624 * 119.99847 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 120.00097 * 179.97438 * 19 17 16 22 22 H 1.48507 * 109.47140 * 0.02562 * 21 19 17 23 23 H 1.48505 * 109.46856 * 119.99938 * 21 19 17 24 24 H 1.48496 * 109.47274 * 239.99849 * 21 19 17 25 25 C 1.47431 * 125.64579 * 180.02562 * 10 8 7 26 26 S 1.70954 * 124.80524 * 270.32922 * 4 3 2 27 27 H 1.08992 * 109.47456 * 299.99786 * 1 2 3 28 28 H 1.09002 * 109.47469 * 59.99950 * 1 2 3 29 29 H 1.09002 * 109.47221 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.46892 * 60.00557 * 3 2 1 31 31 H 1.08998 * 109.47412 * 299.99644 * 3 2 1 32 32 H 1.07999 * 122.90381 * 179.97438 * 6 5 4 33 33 H 1.09001 * 109.88251 * 59.55144 * 11 10 8 34 34 H 1.09004 * 109.88394 * 298.39057 * 11 10 8 35 35 H 1.09002 * 110.72109 * 96.17040 * 12 11 10 36 36 H 1.09003 * 110.72356 * 219.26865 * 12 11 10 37 37 H 1.09004 * 109.47034 * 59.99554 * 14 13 12 38 38 H 1.08998 * 109.47624 * 179.97438 * 14 13 12 39 39 H 1.09000 * 109.47265 * 300.00012 * 14 13 12 40 40 H 1.08999 * 109.47315 * 299.99847 * 15 13 12 41 41 H 1.08998 * 109.47366 * 60.00704 * 15 13 12 42 42 H 0.96996 * 119.99837 * 0.02562 * 16 15 13 43 43 H 0.96995 * 120.00211 * 179.97438 * 20 19 17 44 44 H 1.08999 * 110.36190 * 322.93058 * 25 10 8 45 45 H 1.08998 * 110.36491 * 85.14737 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3056 0.0000 4 6 3.5125 1.1865 0.0006 5 7 4.2493 1.1276 -1.0619 6 6 5.5435 1.0246 -0.8917 7 6 5.9328 0.9935 0.4075 8 6 7.3119 0.8832 0.8947 9 8 8.2328 0.8091 0.1029 10 7 7.5589 0.8640 2.2195 11 6 6.5456 0.9461 3.2815 12 6 7.2884 0.8605 4.6314 13 6 8.6230 0.1645 4.2549 14 6 8.4498 -1.3541 4.1879 15 6 9.7352 0.5448 5.2344 16 7 10.9775 -0.1288 4.8480 17 6 12.1168 0.0614 5.5836 18 1 12.0996 0.7083 6.4483 19 6 13.2941 -0.5765 5.2173 20 7 13.3154 -1.3637 4.1626 21 14 14.8483 -0.3165 6.2203 22 1 14.5616 0.6073 7.3471 23 1 15.3154 -1.6203 6.7563 24 1 15.9034 0.2697 5.3552 25 6 8.8904 0.7581 2.8438 26 16 4.4840 1.1017 1.4047 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 1.6885 1.8463 0.8900 31 1 1.6885 1.8464 -0.8900 32 1 6.2408 0.9685 -1.7145 33 1 5.8451 0.1160 3.1905 34 1 6.0115 1.8938 3.2118 35 1 7.4730 1.8565 5.0340 36 1 6.7261 0.2564 5.3435 37 1 7.7019 -1.6016 3.4346 38 1 9.4001 -1.8169 3.9217 39 1 8.1239 -1.7258 5.1594 40 1 9.8856 1.6242 5.2122 41 1 9.4531 0.2378 6.2415 42 1 10.9930 -0.7095 4.0713 43 1 14.1380 -1.8091 3.9064 44 1 9.5281 0.0892 2.2659 45 1 9.3503 1.7429 2.9258 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569694948.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:31 Heat of formation + Delta-G solvation = -13.252486 kcal Electronic energy + Delta-G solvation = -26865.243917 eV Core-core repulsion = 23010.512332 eV Total energy + Delta-G solvation = -3854.731586 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.51233 -39.87926 -38.32405 -37.81053 -34.91544 -32.85103 -31.82508 -30.56207 -29.32969 -28.92243 -26.93790 -26.49088 -25.59351 -24.29647 -23.53081 -22.09652 -21.49319 -19.15912 -18.97820 -18.57815 -17.24764 -17.10420 -16.69073 -16.41675 -16.06888 -15.95834 -15.33203 -14.83745 -14.71708 -14.46029 -14.16172 -13.98019 -13.67377 -13.33072 -13.16742 -12.97358 -12.89731 -12.73901 -12.40638 -12.09989 -11.97907 -11.91414 -11.72079 -11.68620 -11.03007 -10.86246 -10.64385 -10.48916 -10.40008 -10.36574 -10.17952 -10.01716 -9.83524 -9.76773 -9.62902 -9.35333 -8.88860 -8.63978 -6.92768 -5.76137 -3.05323 -0.11110 0.83840 1.26806 2.13754 2.82154 3.02477 3.24823 3.43964 3.49215 3.51851 3.87770 4.26665 4.39537 4.50260 4.57372 4.74160 4.76732 4.81577 4.84006 4.86184 4.91322 5.03659 5.18383 5.19172 5.25299 5.39004 5.57701 5.64031 5.77993 5.79475 5.90922 6.03533 6.04243 6.11287 6.18502 6.32274 6.42464 6.48113 6.61845 6.70810 6.79803 7.26885 7.40612 7.70441 7.99614 8.42200 9.53705 10.10263 10.44536 11.46561 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.027603 B = 0.002242 C = 0.002150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.123314 B =12488.382096 C =13019.899267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.383 6.383 3 C 0.138 3.862 4 C 0.025 3.975 5 N -0.460 5.460 6 C 0.114 3.886 7 C -0.277 4.277 8 C 0.604 3.396 9 O -0.520 6.520 10 N -0.609 5.609 11 C 0.088 3.912 12 C -0.116 4.116 13 C -0.077 4.077 14 C -0.132 4.132 15 C 0.170 3.830 16 N -0.731 5.731 17 C -0.241 4.241 18 H 0.071 0.929 19 C -0.013 4.013 20 N -0.931 5.931 21 Si 0.907 3.093 22 H -0.281 1.281 23 H -0.292 1.292 24 H -0.292 1.292 25 C 0.122 3.878 26 S 0.211 5.789 27 H 0.045 0.955 28 H 0.046 0.954 29 H 0.091 0.909 30 H 0.075 0.925 31 H 0.083 0.917 32 H 0.191 0.809 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.082 0.918 36 H 0.086 0.914 37 H 0.044 0.956 38 H 0.073 0.927 39 H 0.057 0.943 40 H 0.022 0.978 41 H 0.026 0.974 42 H 0.385 0.615 43 H 0.255 0.745 44 H 0.088 0.912 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.484 6.322 -4.580 29.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.301 6.301 3 C 0.059 3.941 4 C -0.249 4.249 5 N -0.176 5.176 6 C -0.044 4.044 7 C -0.401 4.401 8 C 0.391 3.609 9 O -0.397 6.397 10 N -0.342 5.342 11 C -0.036 4.036 12 C -0.155 4.155 13 C -0.078 4.078 14 C -0.189 4.189 15 C 0.042 3.958 16 N -0.376 5.376 17 C -0.372 4.372 18 H 0.089 0.911 19 C -0.209 4.209 20 N -0.579 5.579 21 Si 0.738 3.262 22 H -0.206 1.206 23 H -0.219 1.219 24 H -0.219 1.219 25 C 0.001 3.999 26 S 0.469 5.531 27 H 0.064 0.936 28 H 0.065 0.935 29 H 0.110 0.890 30 H 0.093 0.907 31 H 0.101 0.899 32 H 0.208 0.792 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.101 0.899 36 H 0.105 0.895 37 H 0.063 0.937 38 H 0.092 0.908 39 H 0.076 0.924 40 H 0.040 0.960 41 H 0.044 0.956 42 H 0.220 0.780 43 H 0.065 0.935 44 H 0.106 0.894 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -28.325 6.209 -4.375 29.326 hybrid contribution 1.226 0.086 -0.527 1.337 sum -27.099 6.295 -4.901 28.249 Atomic orbital electron populations 1.22823 0.79826 1.03467 1.00391 1.87976 1.20443 1.26133 1.95531 1.20812 0.84493 0.86202 1.02619 1.27174 1.00824 1.03637 0.93236 1.66199 1.04815 1.14925 1.31658 1.22181 0.90649 0.95997 0.95599 1.25921 0.98116 1.18152 0.97959 1.16280 0.85918 0.77519 0.81181 1.90887 1.44243 1.50415 1.54196 1.48363 1.09878 1.71852 1.04121 1.22199 0.91584 1.01365 0.88449 1.22685 0.95975 1.02178 0.94642 1.22066 0.95028 0.96192 0.94535 1.21695 1.02542 0.93521 1.01133 1.20567 0.85466 0.95492 0.94259 1.42410 1.04985 1.55927 1.34277 1.19243 0.87684 1.23036 1.07206 0.91126 1.24749 0.97983 0.99951 0.98246 1.69665 1.26992 1.34254 1.27034 0.86127 0.83688 0.77217 0.79187 1.20589 1.21917 1.21889 1.22514 0.82662 1.01916 0.92804 1.84125 0.95813 1.63724 1.09476 0.93592 0.93532 0.89008 0.90678 0.89917 0.79234 0.90982 0.91047 0.89927 0.89519 0.93666 0.90809 0.92368 0.96004 0.95640 0.78007 0.93505 0.89382 0.90581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 11.01 101.05 1.11 1.26 16 2 O -0.38 -3.31 10.69 -35.23 -0.38 -3.69 16 3 C 0.14 1.00 6.51 36.01 0.23 1.24 16 4 C 0.03 0.26 7.02 -13.29 -0.09 0.16 16 5 N -0.46 -5.62 10.51 -11.50 -0.12 -5.75 16 6 C 0.11 1.43 11.09 -18.85 -0.21 1.22 16 7 C -0.28 -3.54 6.40 -37.09 -0.24 -3.78 16 8 C 0.60 9.45 7.82 -12.85 -0.10 9.35 16 9 O -0.52 -10.04 17.12 5.21 0.09 -9.95 16 10 N -0.61 -8.67 3.32 -171.74 -0.57 -9.23 16 11 C 0.09 0.93 4.87 -3.07 -0.01 0.91 16 12 C -0.12 -1.25 5.90 -24.90 -0.15 -1.40 16 13 C -0.08 -1.15 0.64 -152.09 -0.10 -1.25 16 14 C -0.13 -2.01 8.42 37.15 0.31 -1.70 16 15 C 0.17 3.18 5.26 -4.04 -0.02 3.16 16 16 N -0.73 -17.80 5.18 -59.90 -0.31 -18.11 16 17 C -0.24 -6.60 9.99 -15.06 -0.15 -6.75 16 18 H 0.07 1.88 7.83 -52.48 -0.41 1.47 16 19 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 20 N -0.93 -28.14 13.06 55.49 0.72 -27.42 16 21 Si 0.91 22.37 29.55 -169.99 -5.02 17.35 16 22 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 23 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 24 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 25 C 0.12 2.00 5.65 -2.26 -0.01 1.99 16 26 S 0.21 1.96 18.65 -107.50 -2.00 -0.04 16 27 H 0.05 0.14 8.14 -51.93 -0.42 -0.28 16 28 H 0.05 0.17 8.14 -51.93 -0.42 -0.25 16 29 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 31 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.19 2.23 8.06 -52.49 -0.42 1.80 16 33 H 0.07 0.69 6.86 -51.93 -0.36 0.33 16 34 H 0.07 0.63 7.04 -51.93 -0.37 0.26 16 35 H 0.08 0.82 8.04 -51.93 -0.42 0.40 16 36 H 0.09 0.78 8.05 -51.93 -0.42 0.37 16 37 H 0.04 0.63 7.91 -51.93 -0.41 0.22 16 38 H 0.07 1.36 6.65 -51.93 -0.35 1.02 16 39 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.02 0.41 8.09 -51.93 -0.42 -0.01 16 41 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 42 H 0.39 9.95 6.24 -40.82 -0.25 9.69 16 43 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 44 H 0.09 1.69 7.95 -51.93 -0.41 1.28 16 45 H 0.08 1.29 8.00 -51.93 -0.42 0.87 16 LS Contribution 381.49 15.07 5.75 5.75 Total: -1.00 -34.33 381.49 -8.11 -42.43 By element: Atomic # 1 Polarization: 11.46 SS G_CDS: -6.74 Total: 4.72 kcal Atomic # 6 Polarization: 3.46 SS G_CDS: 0.48 Total: 3.94 kcal Atomic # 7 Polarization: -60.23 SS G_CDS: -0.28 Total: -60.51 kcal Atomic # 8 Polarization: -13.35 SS G_CDS: -0.29 Total: -13.64 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.35 kcal Atomic # 16 Polarization: 1.96 SS G_CDS: -2.00 Total: -0.04 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -34.33 -8.11 -42.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569694948.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.181 kcal (2) G-P(sol) polarization free energy of solvation -34.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds