Wall clock time and date at job start Sat Apr 11 2020 05:39:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.36768 * 125.80411 * 2 1 4 4 C 1.47263 * 126.93911 * 359.97436 * 3 2 1 5 5 O 1.21623 * 120.00126 * 359.71320 * 4 3 2 6 6 N 1.34777 * 119.99630 * 179.71006 * 4 3 2 7 7 C 1.46499 * 119.99665 * 179.72408 * 6 4 3 8 8 C 1.53004 * 109.47198 * 180.27868 * 7 6 4 9 9 C 1.52997 * 109.47000 * 179.97438 * 8 7 6 10 10 N 1.46506 * 109.46748 * 180.02562 * 9 8 7 11 11 C 1.34775 * 119.99877 * 180.02562 * 10 9 8 12 12 O 1.21284 * 120.00391 * 359.97438 * 11 10 9 13 13 C 1.50703 * 120.00069 * 180.02562 * 11 10 9 14 14 S 1.81001 * 109.47011 * 179.97438 * 13 11 10 15 15 C 1.76203 * 99.99974 * 179.97438 * 14 13 11 16 16 H 1.08002 * 119.99699 * 359.97438 * 15 14 13 17 17 C 1.38794 * 120.00142 * 179.97438 * 15 14 13 18 18 N 1.31630 * 120.00186 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 119.99998 * 180.02562 * 17 15 14 20 20 H 1.48491 * 109.47368 * 89.99751 * 19 17 15 21 21 H 1.48503 * 109.46914 * 209.99846 * 19 17 15 22 22 H 1.48504 * 109.46817 * 329.99441 * 19 17 15 23 23 C 1.46690 * 106.11787 * 179.71569 * 3 2 1 24 24 C 1.34493 * 106.32943 * 0.25821 * 23 3 2 25 25 N 1.34664 * 125.79869 * 180.16205 * 2 1 3 26 26 C 1.46499 * 124.85268 * 0.02562 * 25 2 1 27 27 H 1.09002 * 109.47222 * 90.00112 * 1 2 3 28 28 H 1.09006 * 109.47580 * 210.00227 * 1 2 3 29 29 H 1.09000 * 109.47476 * 330.00106 * 1 2 3 30 30 H 0.97001 * 120.00485 * 0.02562 * 6 4 3 31 31 H 1.09009 * 109.47454 * 300.27637 * 7 6 4 32 32 H 1.08998 * 109.47492 * 60.27932 * 7 6 4 33 33 H 1.08995 * 109.46638 * 300.00121 * 8 7 6 34 34 H 1.09006 * 109.47139 * 60.00254 * 8 7 6 35 35 H 1.08995 * 109.47672 * 299.99669 * 9 8 7 36 36 H 1.09007 * 109.47288 * 60.00489 * 9 8 7 37 37 H 0.96992 * 119.99973 * 359.97438 * 10 9 8 38 38 H 1.09002 * 109.46788 * 299.98995 * 13 11 10 39 39 H 1.08998 * 109.47474 * 59.99475 * 13 11 10 40 40 H 0.96995 * 120.00076 * 179.97438 * 18 17 15 41 41 H 1.07994 * 126.83697 * 180.29986 * 23 3 2 42 42 H 1.08002 * 125.56840 * 180.02562 * 24 23 3 43 43 H 1.09003 * 109.47017 * 270.30988 * 26 25 2 44 44 H 1.08993 * 109.47396 * 30.31257 * 26 25 2 45 45 H 1.09001 * 109.47185 * 150.31452 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3071 1.1092 0.0000 4 6 1.8702 2.5156 -0.0005 5 8 0.6840 2.7839 -0.0063 6 7 2.7850 3.5053 0.0055 7 6 2.3505 4.9043 -0.0012 8 6 3.5768 5.8193 0.0007 9 6 3.1229 7.2804 -0.0069 10 7 4.2972 8.1565 -0.0058 11 6 4.1393 9.4949 -0.0112 12 8 3.0252 9.9742 -0.0175 13 6 5.3472 10.3961 -0.0106 14 16 4.8103 12.1246 -0.0194 15 6 6.3767 12.9316 -0.0164 16 1 7.2851 12.3474 -0.0102 17 6 6.4432 14.3179 -0.0221 18 7 5.3361 15.0300 -0.0302 19 14 8.1038 15.1734 -0.0196 20 1 8.5491 15.3941 -1.4189 21 1 7.9860 16.4810 0.6744 22 1 9.0965 14.3252 0.6878 23 6 3.6882 0.6151 0.0070 24 6 3.6095 -0.7275 0.0048 25 7 2.2947 -1.0922 -0.0031 26 6 1.8093 -2.4745 -0.0075 27 1 -0.3634 0.0000 -1.0277 28 1 -0.3634 -0.8900 0.5139 29 1 -0.3634 0.8900 0.5138 30 1 3.7311 3.2914 0.0097 31 1 1.7556 5.0959 -0.8943 32 1 1.7484 5.1021 0.8856 33 1 4.1715 5.6278 0.8937 34 1 4.1789 5.6217 -0.8863 35 1 2.5284 7.4716 -0.9002 36 1 2.5206 7.4784 0.8798 37 1 5.1882 7.7732 -0.0004 38 1 5.9427 10.2049 0.8821 39 1 5.9486 10.1983 -0.8978 40 1 5.3826 15.9988 -0.0338 41 1 4.5890 1.2108 0.0134 42 1 4.4497 -1.4061 0.0089 43 1 1.6833 -2.8186 1.0190 44 1 0.8521 -2.5218 -0.5267 45 1 2.5315 -3.1115 -0.5182 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001575710113.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:40 Heat of formation + Delta-G solvation = -37.877854 kcal Electronic energy + Delta-G solvation = -24789.220220 eV Core-core repulsion = 20933.420798 eV Total energy + Delta-G solvation = -3855.799422 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.78371 -39.46167 -39.06523 -36.19377 -34.39959 -33.32539 -32.41312 -31.99994 -31.50233 -29.16920 -27.36293 -26.75382 -25.54340 -24.99295 -22.52096 -21.99914 -20.48589 -20.30683 -19.38131 -17.89443 -17.70963 -16.43369 -16.28622 -16.25499 -16.02294 -15.94928 -15.41230 -15.07304 -14.78934 -14.55813 -14.32341 -13.92016 -13.63776 -13.53277 -13.45802 -13.13474 -13.06501 -12.97334 -12.91000 -12.62688 -12.47605 -12.22091 -11.93465 -11.90147 -11.82947 -11.24263 -11.04880 -11.00895 -10.74938 -10.05694 -9.79962 -9.38661 -9.32598 -9.05529 -9.02527 -8.86961 -8.56459 -8.21426 -6.48087 -6.19949 -3.90498 1.40013 1.99203 2.29717 2.94727 3.12645 3.17637 3.23614 3.29987 3.32587 3.35658 3.75789 4.16184 4.22005 4.30968 4.44895 4.52254 4.64795 4.69550 4.75056 4.76124 4.80635 4.93057 5.13713 5.15182 5.21134 5.24633 5.30446 5.42121 5.44713 5.55116 5.61480 5.68985 5.81717 5.85173 5.93160 5.96765 6.15615 6.23401 6.34602 6.60205 6.62617 6.76473 7.36437 7.61048 7.72235 8.13474 8.36784 8.63756 9.25292 10.87520 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.038452 B = 0.001332 C = 0.001290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.005306 B =21013.833775 C =21700.154445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.107 3.893 3 C -0.239 4.239 4 C 0.592 3.408 5 O -0.550 6.550 6 N -0.727 5.727 7 C 0.124 3.876 8 C -0.142 4.142 9 C 0.124 3.876 10 N -0.740 5.740 11 C 0.531 3.469 12 O -0.516 6.516 13 C -0.153 4.153 14 S -0.060 6.060 15 C -0.536 4.536 16 H 0.072 0.928 17 C 0.074 3.926 18 N -0.868 5.868 19 Si 0.919 3.081 20 H -0.277 1.277 21 H -0.282 1.282 22 H -0.272 1.272 23 C -0.167 4.167 24 C -0.018 4.018 25 N -0.447 5.447 26 C 0.067 3.933 27 H 0.077 0.923 28 H 0.062 0.938 29 H 0.102 0.898 30 H 0.400 0.600 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.398 0.602 38 H 0.090 0.910 39 H 0.090 0.910 40 H 0.268 0.732 41 H 0.146 0.854 42 H 0.167 0.833 43 H 0.075 0.925 44 H 0.086 0.914 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.894 -38.777 0.079 38.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.010 4.010 3 C -0.249 4.249 4 C 0.381 3.619 5 O -0.429 6.429 6 N -0.379 5.379 7 C 0.000 4.000 8 C -0.181 4.181 9 C 0.000 4.000 10 N -0.395 5.395 11 C 0.317 3.683 12 O -0.390 6.390 13 C -0.304 4.304 14 S 0.166 5.834 15 C -0.684 4.684 16 H 0.091 0.909 17 C -0.135 4.135 18 N -0.503 5.503 19 Si 0.745 3.255 20 H -0.203 1.203 21 H -0.208 1.208 22 H -0.197 1.197 23 C -0.191 4.191 24 C -0.144 4.144 25 N -0.123 5.123 26 C -0.075 4.075 27 H 0.096 0.904 28 H 0.081 0.919 29 H 0.121 0.879 30 H 0.234 0.766 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.095 0.905 34 H 0.095 0.905 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.232 0.768 38 H 0.108 0.892 39 H 0.108 0.892 40 H 0.078 0.922 41 H 0.163 0.837 42 H 0.184 0.816 43 H 0.094 0.906 44 H 0.104 0.896 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -5.798 -37.929 0.065 38.370 hybrid contribution 3.509 -0.428 0.000 3.535 sum -2.289 -38.357 0.065 38.426 Atomic orbital electron populations 1.20581 0.87014 1.04202 1.03453 1.20357 0.93829 0.85157 1.01683 1.20091 0.93270 0.91899 1.19646 1.17318 0.85225 0.84035 0.75334 1.90748 1.16656 1.84440 1.51095 1.45719 1.09835 1.05870 1.76427 1.21200 0.96327 0.79355 1.03106 1.21973 0.98260 0.94342 1.03479 1.21111 0.88676 0.87328 1.02934 1.45966 1.09269 1.06103 1.78113 1.20313 0.91033 0.81793 0.75182 1.90712 1.26217 1.74756 1.47357 1.23531 0.98739 1.03214 1.04913 1.85419 1.11550 0.89706 1.96710 1.22872 0.92608 0.93988 1.58950 0.90934 1.24987 0.97682 0.96338 0.94537 1.70017 1.26845 1.06564 1.46858 0.86171 0.82295 0.78704 0.78341 1.20278 1.20751 1.19710 1.22005 0.95697 0.93608 1.07830 1.21710 0.85407 0.96304 1.10967 1.43584 1.06075 1.06195 1.56453 1.22112 1.01815 0.79957 1.03616 0.90431 0.91927 0.87934 0.76600 0.90977 0.90970 0.90518 0.90528 0.91241 0.91237 0.76846 0.89219 0.89218 0.92181 0.83678 0.81551 0.90596 0.89557 0.89453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.67 9.26 36.00 0.33 -0.34 16 2 C 0.11 0.89 6.89 -81.88 -0.56 0.33 16 3 C -0.24 -2.28 6.29 -103.35 -0.65 -2.93 16 4 C 0.59 6.59 7.81 -12.59 -0.10 6.50 16 5 O -0.55 -7.83 14.82 5.26 0.08 -7.75 16 6 N -0.73 -6.18 5.55 -61.43 -0.34 -6.52 16 7 C 0.12 1.09 5.67 -4.04 -0.02 1.07 16 8 C -0.14 -1.05 5.44 -26.73 -0.15 -1.19 16 9 C 0.12 1.39 5.67 -4.04 -0.02 1.37 16 10 N -0.74 -9.59 5.56 -60.29 -0.33 -9.92 16 11 C 0.53 9.93 7.85 -10.98 -0.09 9.85 16 12 O -0.52 -11.90 15.86 5.55 0.09 -11.81 16 13 C -0.15 -3.09 6.16 36.01 0.22 -2.87 16 14 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 15 C -0.54 -15.33 9.50 30.94 0.29 -15.03 16 16 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 17 C 0.07 2.11 5.49 -17.43 -0.10 2.02 16 18 N -0.87 -26.30 13.22 55.49 0.73 -25.57 16 19 Si 0.92 21.44 29.55 -169.99 -5.02 16.42 16 20 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 21 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 22 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 23 C -0.17 -1.17 10.56 -37.49 -0.40 -1.57 16 24 C -0.02 -0.10 11.34 -16.82 -0.19 -0.29 16 25 N -0.45 -2.69 3.09 -119.88 -0.37 -3.06 16 26 C 0.07 0.14 10.60 59.85 0.63 0.78 16 27 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.06 0.29 7.59 -51.93 -0.39 -0.11 16 29 H 0.10 0.95 6.47 -51.93 -0.34 0.61 16 30 H 0.40 2.38 7.60 -40.82 -0.31 2.07 16 31 H 0.07 0.70 8.14 -51.92 -0.42 0.28 16 32 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.40 3.85 8.47 -40.82 -0.35 3.50 16 38 H 0.09 1.66 8.14 -51.92 -0.42 1.24 16 39 H 0.09 1.66 8.14 -51.92 -0.42 1.23 16 40 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 41 H 0.15 0.68 7.69 -52.49 -0.40 0.28 16 42 H 0.17 0.46 8.06 -52.49 -0.42 0.03 16 43 H 0.08 0.09 8.14 -51.93 -0.42 -0.33 16 44 H 0.09 0.11 7.51 -51.93 -0.39 -0.28 16 45 H 0.09 0.04 8.13 -51.93 -0.42 -0.38 16 LS Contribution 397.14 15.07 5.98 5.98 Total: -1.00 -38.94 397.14 -8.98 -47.92 By element: Atomic # 1 Polarization: 7.29 SS G_CDS: -6.80 Total: 0.50 kcal Atomic # 6 Polarization: -1.53 SS G_CDS: -0.79 Total: -2.32 kcal Atomic # 7 Polarization: -44.76 SS G_CDS: -0.31 Total: -45.08 kcal Atomic # 8 Polarization: -19.73 SS G_CDS: 0.17 Total: -19.56 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -38.94 -8.98 -47.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001575710113.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.043 kcal (2) G-P(sol) polarization free energy of solvation -38.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds