Wall clock time and date at job start Sat Apr 11 2020 05:39:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.34658 * 125.80338 * 2 1 4 4 H 0.97000 * 124.84736 * 359.94151 * 3 2 1 5 5 C 1.36441 * 110.30131 * 180.21147 * 3 2 1 6 6 C 1.34489 * 108.85595 * 359.61534 * 5 3 2 7 7 C 1.36776 * 125.80195 * 179.97438 * 2 1 3 8 8 C 1.47260 * 126.94314 * 359.97438 * 7 2 1 9 9 O 1.21629 * 119.99841 * 323.76274 * 8 7 2 10 10 N 1.34770 * 120.00360 * 143.75677 * 8 7 2 11 11 C 1.46502 * 119.99865 * 4.54988 * 10 8 7 12 12 C 1.46494 * 120.00378 * 184.54297 * 10 8 7 13 13 C 1.52999 * 109.47169 * 90.00418 * 12 10 8 14 14 C 1.52998 * 109.47556 * 179.97438 * 13 12 10 15 15 N 1.46494 * 109.47542 * 179.97438 * 14 13 12 16 16 C 1.34778 * 120.00376 * 179.97438 * 15 14 13 17 17 O 1.21280 * 119.99701 * 0.02562 * 16 15 14 18 18 C 1.50699 * 120.00210 * 180.02562 * 16 15 14 19 19 S 1.80996 * 109.47251 * 180.02562 * 18 16 15 20 20 C 1.76199 * 100.00355 * 180.02562 * 19 18 16 21 21 H 1.08001 * 119.99486 * 0.02562 * 20 19 18 22 22 C 1.38796 * 120.00173 * 180.02562 * 20 19 18 23 23 N 1.31629 * 119.99966 * 359.97438 * 22 20 19 24 24 Si 1.86804 * 119.99709 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47071 * 90.00313 * 24 22 20 26 26 H 1.48503 * 109.46727 * 209.99891 * 24 22 20 27 27 H 1.48497 * 109.47181 * 329.99795 * 24 22 20 28 28 H 1.09003 * 109.46912 * 90.02202 * 1 2 3 29 29 H 1.09004 * 109.46774 * 210.02093 * 1 2 3 30 30 H 1.08994 * 109.47177 * 330.02237 * 1 2 3 31 31 H 1.08007 * 125.57503 * 179.77751 * 5 3 2 32 32 H 1.08003 * 126.83375 * 180.13666 * 6 5 3 33 33 H 1.09000 * 109.47306 * 84.81915 * 11 10 8 34 34 H 1.08999 * 109.47199 * 204.82491 * 11 10 8 35 35 H 1.09001 * 109.47037 * 324.82130 * 11 10 8 36 36 H 1.09005 * 109.47343 * 210.00470 * 12 10 8 37 37 H 1.08996 * 109.47280 * 330.00586 * 12 10 8 38 38 H 1.09005 * 109.47030 * 300.00243 * 13 12 10 39 39 H 1.09001 * 109.47344 * 59.99906 * 13 12 10 40 40 H 1.09005 * 109.47156 * 300.00174 * 14 13 12 41 41 H 1.09010 * 109.47027 * 59.99829 * 14 13 12 42 42 H 0.97001 * 119.99864 * 0.02562 * 15 14 13 43 43 H 1.09005 * 109.47222 * 300.00354 * 18 16 15 44 44 H 1.08996 * 109.46870 * 60.00144 * 18 16 15 45 45 H 0.97000 * 119.99858 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2948 1.0921 0.0000 4 1 1.9734 2.0073 -0.0008 5 6 3.6095 0.7274 -0.0047 6 6 3.6882 -0.6151 0.0007 7 6 2.3071 -1.1093 0.0005 8 6 1.8703 -2.5156 0.0017 9 8 0.8788 -2.8439 0.6249 10 7 2.5691 -3.4389 -0.6880 11 6 3.8176 -3.0639 -1.3564 12 6 2.0804 -4.8176 -0.7690 13 6 1.1713 -4.9654 -1.9908 14 6 0.6614 -6.4054 -2.0759 15 7 -0.2095 -6.5468 -3.2454 16 6 -0.7770 -7.7373 -3.5231 17 8 -0.5671 -8.6914 -2.8044 18 6 -1.6724 -7.8828 -4.7264 19 16 -2.2758 -9.5863 -4.8270 20 6 -3.2662 -9.4749 -6.2800 21 1 -3.3455 -8.5365 -6.8088 22 6 -3.9445 -10.5930 -6.7450 23 7 -3.8474 -11.7367 -6.1008 24 14 -4.9939 -10.4749 -8.2859 25 1 -4.1636 -10.7911 -9.4757 26 1 -6.1172 -11.4421 -8.1950 27 1 -5.5353 -9.0979 -8.4118 28 1 -0.3633 -0.0004 -1.0277 29 1 -0.3633 -0.8898 0.5142 30 1 -0.3633 0.8901 0.5135 31 1 4.4498 1.4060 -0.0092 32 1 4.5891 -1.2109 0.0010 33 1 4.6416 -3.1195 -0.6450 34 1 4.0058 -3.7472 -2.1846 35 1 3.7344 -2.0459 -1.7371 36 1 2.9267 -5.4983 -0.8613 37 1 1.5180 -5.0574 0.1333 38 1 0.3250 -4.2847 -1.8985 39 1 1.7337 -4.7256 -2.8932 40 1 1.5079 -7.0858 -2.1684 41 1 0.0991 -6.6456 -1.1734 42 1 -0.3771 -5.7837 -3.8203 43 1 -2.5192 -7.2027 -4.6337 44 1 -1.1103 -7.6422 -5.6287 45 1 -4.3218 -12.5181 -6.4256 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001576785956.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:42 Heat of formation + Delta-G solvation = -31.757292 kcal Electronic energy + Delta-G solvation = -25557.412710 eV Core-core repulsion = 21701.878696 eV Total energy + Delta-G solvation = -3855.534014 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.70788 -39.64285 -39.03125 -36.32698 -34.89336 -32.41152 -32.36399 -31.99512 -31.06278 -29.15536 -27.34250 -26.83213 -25.56105 -25.21860 -22.61854 -21.50012 -21.20296 -20.22233 -18.82529 -18.04042 -17.79433 -16.63878 -16.48269 -16.23247 -15.62749 -15.46513 -15.46017 -14.86668 -14.77739 -14.40080 -14.25923 -14.01620 -13.80679 -13.42623 -13.26017 -13.04758 -13.01379 -12.91763 -12.73066 -12.65478 -12.38983 -12.24608 -12.00662 -11.75450 -11.70021 -11.04357 -10.99751 -10.97561 -10.73890 -10.07695 -9.78682 -9.38543 -9.21593 -9.04230 -8.92750 -8.81434 -8.57592 -8.19674 -6.46391 -6.18722 -3.88963 1.47114 2.01693 2.56147 2.88002 3.09964 3.12332 3.16582 3.24364 3.30416 3.35978 3.79514 4.23274 4.39549 4.40843 4.62967 4.76836 4.79310 4.82817 4.90519 4.93334 5.05818 5.16287 5.18596 5.23102 5.24686 5.27452 5.40548 5.43239 5.45386 5.54727 5.63758 5.73238 5.76402 5.90624 5.98038 6.04183 6.18376 6.25518 6.34006 6.51669 6.68653 6.98520 7.17131 7.62394 7.77530 8.04496 8.38146 8.67910 9.26479 10.88725 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.023044 B = 0.001622 C = 0.001570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.783827 B =17258.114191 C =17835.535403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.099 3.901 3 N -0.553 5.553 4 H 0.416 0.584 5 C -0.018 4.018 6 C -0.169 4.169 7 C -0.233 4.233 8 C 0.592 3.408 9 O -0.542 6.542 10 N -0.612 5.612 11 C 0.078 3.922 12 C 0.119 3.881 13 C -0.144 4.144 14 C 0.124 3.876 15 N -0.739 5.739 16 C 0.531 3.469 17 O -0.518 6.518 18 C -0.153 4.153 19 S -0.060 6.060 20 C -0.535 4.535 21 H 0.072 0.928 22 C 0.073 3.927 23 N -0.867 5.867 24 Si 0.919 3.081 25 H -0.277 1.277 26 H -0.282 1.282 27 H -0.272 1.272 28 H 0.076 0.924 29 H 0.101 0.899 30 H 0.067 0.933 31 H 0.169 0.831 32 H 0.148 0.852 33 H 0.055 0.945 34 H 0.070 0.930 35 H 0.079 0.921 36 H 0.081 0.919 37 H 0.090 0.910 38 H 0.073 0.927 39 H 0.069 0.931 40 H 0.066 0.934 41 H 0.068 0.932 42 H 0.397 0.603 43 H 0.089 0.911 44 H 0.089 0.911 45 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.037 29.914 10.928 36.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.018 4.018 3 N -0.149 5.149 4 H 0.252 0.748 5 C -0.145 4.145 6 C -0.194 4.194 7 C -0.242 4.242 8 C 0.382 3.618 9 O -0.420 6.420 10 N -0.345 5.345 11 C -0.065 4.065 12 C -0.004 4.004 13 C -0.183 4.183 14 C 0.000 4.000 15 N -0.393 5.393 16 C 0.317 3.683 17 O -0.392 6.392 18 C -0.304 4.304 19 S 0.166 5.834 20 C -0.684 4.684 21 H 0.091 0.909 22 C -0.136 4.136 23 N -0.503 5.503 24 Si 0.745 3.255 25 H -0.203 1.203 26 H -0.208 1.208 27 H -0.197 1.197 28 H 0.095 0.905 29 H 0.120 0.880 30 H 0.086 0.914 31 H 0.186 0.814 32 H 0.165 0.835 33 H 0.073 0.927 34 H 0.088 0.912 35 H 0.097 0.903 36 H 0.099 0.901 37 H 0.108 0.892 38 H 0.091 0.909 39 H 0.088 0.912 40 H 0.085 0.915 41 H 0.086 0.914 42 H 0.231 0.769 43 H 0.108 0.892 44 H 0.107 0.893 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 17.815 28.061 12.490 35.507 hybrid contribution -0.833 2.065 -2.215 3.141 sum 16.982 30.126 10.275 36.077 Atomic orbital electron populations 1.20598 0.87133 1.04752 1.03397 1.20277 0.93635 0.85613 1.02321 1.41596 1.06265 1.08427 1.58584 0.74768 1.21756 0.85681 0.96481 1.10630 1.22164 0.95707 0.93490 1.08003 1.20057 0.93511 0.91927 1.18747 1.17460 0.82221 0.84211 0.77880 1.90771 1.26883 1.81205 1.43170 1.47624 1.24520 1.09824 1.52500 1.22006 0.85251 1.02160 0.97118 1.21359 0.98289 0.81654 0.99135 1.22135 1.00379 0.96784 0.99044 1.21147 0.94165 0.95471 0.89259 1.45978 1.50998 1.12639 1.29712 1.20298 0.79771 0.82089 0.86139 1.90700 1.60397 1.38222 1.49920 1.23530 1.00993 1.08086 0.97791 1.85397 1.60177 1.01530 1.36274 1.22875 1.33705 0.99354 1.12436 0.90942 1.24991 0.96352 0.94512 0.97745 1.70021 1.40994 1.00450 1.38816 0.86169 0.79437 0.78107 0.81783 1.20295 1.20755 1.19717 0.90534 0.88046 0.91389 0.81358 0.83467 0.92669 0.91151 0.90263 0.90065 0.89189 0.90875 0.91225 0.91541 0.91374 0.76900 0.89241 0.89266 0.92203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.69 10.21 36.01 0.37 -0.32 16 2 C 0.10 0.77 7.17 -81.88 -0.59 0.18 16 3 N -0.55 -2.70 5.90 -9.10 -0.05 -2.75 16 4 H 0.42 0.74 8.96 -40.82 -0.37 0.37 16 5 C -0.02 -0.09 11.89 -16.83 -0.20 -0.29 16 6 C -0.17 -1.11 8.76 -37.50 -0.33 -1.44 16 7 C -0.23 -2.15 5.49 -103.35 -0.57 -2.72 16 8 C 0.59 6.67 7.47 -12.60 -0.09 6.58 16 9 O -0.54 -7.90 15.03 5.25 0.08 -7.82 16 10 N -0.61 -5.44 2.87 -182.91 -0.53 -5.96 16 11 C 0.08 0.44 9.04 59.85 0.54 0.98 16 12 C 0.12 1.06 5.42 -4.04 -0.02 1.04 16 13 C -0.14 -1.34 5.65 -26.73 -0.15 -1.49 16 14 C 0.12 1.51 5.67 -4.05 -0.02 1.49 16 15 N -0.74 -10.35 5.56 -60.29 -0.33 -10.69 16 16 C 0.53 10.28 7.85 -10.99 -0.09 10.20 16 17 O -0.52 -12.17 15.86 5.56 0.09 -12.08 16 18 C -0.15 -3.18 6.16 36.01 0.22 -2.95 16 19 S -0.06 -1.67 20.57 -107.50 -2.21 -3.88 16 20 C -0.54 -15.47 9.50 30.94 0.29 -15.18 16 21 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 22 C 0.07 2.11 5.49 -17.43 -0.10 2.02 16 23 N -0.87 -26.45 13.22 55.49 0.73 -25.71 16 24 Si 0.92 21.62 29.55 -169.99 -5.02 16.60 16 25 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 26 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 27 H -0.27 -6.23 7.11 56.52 0.40 -5.82 16 28 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.10 0.94 6.57 -51.93 -0.34 0.60 16 30 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.17 0.28 8.06 -52.48 -0.42 -0.14 16 32 H 0.15 0.71 6.44 -52.48 -0.34 0.38 16 33 H 0.05 0.25 7.36 -51.93 -0.38 -0.13 16 34 H 0.07 0.32 8.03 -51.93 -0.42 -0.09 16 35 H 0.08 0.43 5.84 -51.93 -0.30 0.13 16 36 H 0.08 0.57 8.07 -51.93 -0.42 0.16 16 37 H 0.09 0.96 7.36 -51.93 -0.38 0.58 16 38 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 39 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 40 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.07 0.92 8.14 -51.92 -0.42 0.50 16 42 H 0.40 4.41 8.47 -40.82 -0.35 4.06 16 43 H 0.09 1.72 8.14 -51.91 -0.42 1.30 16 44 H 0.09 1.69 8.14 -51.92 -0.42 1.27 16 45 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 392.08 15.07 5.91 5.91 Total: -1.00 -38.93 392.08 -8.71 -47.64 By element: Atomic # 1 Polarization: 7.30 SS G_CDS: -6.64 Total: 0.66 kcal Atomic # 6 Polarization: -1.18 SS G_CDS: -0.73 Total: -1.91 kcal Atomic # 7 Polarization: -44.93 SS G_CDS: -0.18 Total: -45.11 kcal Atomic # 8 Polarization: -20.07 SS G_CDS: 0.17 Total: -19.90 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.88 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -38.93 -8.71 -47.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001576785956.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.887 kcal (2) G-P(sol) polarization free energy of solvation -38.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds