Wall clock time and date at job start Sat Apr 11 2020 05:39:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.35456 * 125.56024 * 2 1 4 4 C 1.39832 * 107.86346 * 180.15427 * 3 2 1 5 5 C 1.50703 * 126.45781 * 179.86838 * 4 3 2 6 6 C 1.37873 * 107.08327 * 359.60276 * 4 3 2 7 7 C 1.46681 * 126.23113 * 180.24580 * 6 4 3 8 8 O 1.21694 * 120.00025 * 359.97438 * 7 6 4 9 9 N 1.34776 * 119.99898 * 179.97438 * 7 6 4 10 10 C 1.46497 * 119.99884 * 179.97438 * 9 7 6 11 11 H 1.09003 * 109.47644 * 325.00519 * 10 9 7 12 12 C 1.53001 * 109.47118 * 85.00260 * 10 9 7 13 13 C 1.53000 * 109.47400 * 205.00181 * 10 9 7 14 14 N 1.46497 * 109.46936 * 54.99787 * 13 10 9 15 15 C 1.34775 * 120.00028 * 180.02562 * 14 13 10 16 16 O 1.21279 * 119.99870 * 0.02562 * 15 14 13 17 17 C 1.50702 * 120.00115 * 180.02562 * 15 14 13 18 18 S 1.81006 * 109.46892 * 179.97438 * 17 15 14 19 19 C 1.76205 * 99.99435 * 179.97438 * 18 17 15 20 20 H 1.07998 * 120.00442 * 359.97438 * 19 18 17 21 21 C 1.38806 * 119.99340 * 179.97438 * 19 18 17 22 22 N 1.31625 * 120.00312 * 0.02562 * 21 19 18 23 23 Si 1.86806 * 119.99593 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47108 * 0.02562 * 23 21 19 25 25 H 1.48498 * 109.46867 * 120.00179 * 23 21 19 26 26 H 1.48491 * 109.47014 * 240.00114 * 23 21 19 27 27 N 1.35532 * 125.56743 * 179.70847 * 2 1 3 28 28 H 0.96997 * 125.67526 * 359.97438 * 27 2 1 29 29 H 1.09000 * 109.46716 * 270.28834 * 1 2 3 30 30 H 1.08998 * 109.47508 * 30.28786 * 1 2 3 31 31 H 1.09005 * 109.47054 * 150.29346 * 1 2 3 32 32 H 1.08006 * 126.06816 * 0.02857 * 3 2 1 33 33 H 1.09002 * 109.47152 * 269.68312 * 5 4 3 34 34 H 1.09001 * 109.46980 * 149.68412 * 5 4 3 35 35 H 1.09004 * 109.47113 * 29.68393 * 5 4 3 36 36 H 0.96998 * 120.00173 * 0.02562 * 9 7 6 37 37 H 1.08998 * 109.47431 * 179.97438 * 12 10 9 38 38 H 1.09007 * 109.47234 * 299.99772 * 12 10 9 39 39 H 1.08994 * 109.47233 * 59.99605 * 12 10 9 40 40 H 1.08995 * 109.47282 * 175.00402 * 13 10 9 41 41 H 1.09004 * 109.46537 * 295.00373 * 13 10 9 42 42 H 0.97001 * 120.00256 * 0.02562 * 14 13 10 43 43 H 1.09006 * 109.46758 * 299.99386 * 17 15 14 44 44 H 1.08993 * 109.47553 * 59.99656 * 17 15 14 45 45 H 0.97000 * 120.00196 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2948 1.1019 0.0000 4 6 3.6269 0.6769 -0.0036 5 6 4.8485 1.5594 -0.0077 6 6 3.6122 -0.7018 0.0034 7 6 4.7860 -1.5813 0.0079 8 8 5.9049 -1.1027 0.0050 9 7 4.6254 -2.9194 0.0152 10 6 5.7978 -3.7979 0.0191 11 1 6.5930 -3.3452 -0.5733 12 6 6.2823 -3.9954 1.4569 13 6 5.4217 -5.1532 -0.5830 14 7 4.8462 -4.9529 -1.9152 15 6 4.4388 -6.0137 -2.6398 16 8 4.5481 -7.1342 -2.1887 17 6 3.8474 -5.8077 -4.0105 18 16 3.4023 -7.4111 -4.7227 19 6 2.7549 -6.8870 -6.2754 20 1 2.7291 -5.8360 -6.5228 21 6 2.2781 -7.8249 -7.1808 22 7 2.3091 -9.1058 -6.8792 23 14 1.5924 -7.2693 -8.8272 24 1 1.6700 -5.7894 -8.9217 25 1 2.3868 -7.8773 -9.9247 26 1 0.1761 -7.6998 -8.9442 27 7 2.2954 -1.1024 0.0056 28 1 1.9834 -2.0209 0.0106 29 1 -0.3633 0.0052 1.0277 30 1 -0.3634 0.8874 -0.5183 31 1 -0.3633 -0.8926 -0.5093 32 1 1.9544 2.1270 0.0004 33 1 5.1434 1.7669 -1.0363 34 1 5.6640 1.0534 0.5090 35 1 4.6217 2.4962 0.5013 36 1 3.7336 -3.3009 0.0172 37 1 7.1543 -4.6493 1.4599 38 1 6.5504 -3.0298 1.8859 39 1 5.4872 -4.4479 2.0493 40 1 6.3129 -5.7756 -0.6619 41 1 4.6904 -5.6452 0.0584 42 1 4.7585 -4.0567 -2.2759 43 1 2.9563 -5.1847 -3.9318 44 1 4.5789 -5.3162 -4.6518 45 1 1.9756 -9.7612 -7.5117 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001579333440.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:46 Heat of formation + Delta-G solvation = -46.682043 kcal Electronic energy + Delta-G solvation = -26294.346477 eV Core-core repulsion = 22438.165278 eV Total energy + Delta-G solvation = -3856.181200 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.76816 -39.89759 -39.01300 -36.54553 -33.86204 -33.00199 -32.47223 -32.30873 -31.03874 -29.44952 -28.00714 -26.70120 -26.01392 -25.41166 -22.61101 -21.19638 -20.68477 -20.42378 -19.60925 -18.72669 -17.87468 -16.75730 -16.33922 -16.20175 -15.66895 -15.41915 -15.09420 -14.84353 -14.66563 -14.36198 -14.09395 -13.70719 -13.58438 -13.39496 -13.28312 -13.13920 -13.06779 -12.96199 -12.85438 -12.58550 -12.53706 -12.31772 -12.25203 -11.87364 -11.75655 -11.34315 -11.10357 -11.06420 -10.79348 -10.21564 -9.85514 -9.60681 -9.47326 -9.12587 -9.06566 -9.02945 -8.31620 -8.29098 -6.55346 -6.26147 -3.97096 1.13459 2.36850 2.66211 2.75335 2.95729 3.00591 3.09576 3.18541 3.25197 3.29680 3.63973 4.16130 4.29387 4.44548 4.56777 4.75290 4.77511 4.90402 4.92768 5.07398 5.09297 5.10436 5.14197 5.28484 5.34012 5.43948 5.46540 5.48947 5.59633 5.62967 5.66009 5.70235 5.81254 5.86495 5.89700 6.06694 6.07568 6.15909 6.45130 6.46711 6.65103 7.00144 7.17072 7.55369 7.57448 7.85919 8.31197 8.49695 9.19504 10.81311 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010632 B = 0.002519 C = 0.002178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2632.961785 B =11114.657548 C =12854.450602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.059 3.941 3 C -0.211 4.211 4 C -0.067 4.067 5 C -0.091 4.091 6 C -0.066 4.066 7 C 0.593 3.407 8 O -0.525 6.525 9 N -0.730 5.730 10 C 0.133 3.867 11 H 0.099 0.901 12 C -0.160 4.160 13 C 0.113 3.887 14 N -0.741 5.741 15 C 0.532 3.468 16 O -0.515 6.515 17 C -0.154 4.154 18 S -0.059 6.059 19 C -0.535 4.535 20 H 0.073 0.927 21 C 0.073 3.927 22 N -0.867 5.867 23 Si 0.919 3.081 24 H -0.271 1.271 25 H -0.279 1.279 26 H -0.280 1.280 27 N -0.538 5.538 28 H 0.415 0.585 29 H 0.076 0.924 30 H 0.085 0.915 31 H 0.069 0.931 32 H 0.142 0.858 33 H 0.067 0.933 34 H 0.080 0.920 35 H 0.061 0.939 36 H 0.396 0.604 37 H 0.072 0.928 38 H 0.066 0.934 39 H 0.060 0.940 40 H 0.084 0.916 41 H 0.072 0.928 42 H 0.399 0.601 43 H 0.088 0.912 44 H 0.090 0.910 45 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.288 20.009 17.993 26.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.059 4.059 3 C -0.235 4.235 4 C -0.076 4.076 5 C -0.148 4.148 6 C -0.178 4.178 7 C 0.381 3.619 8 O -0.401 6.401 9 N -0.382 5.382 10 C 0.029 3.971 11 H 0.117 0.883 12 C -0.219 4.219 13 C -0.012 4.012 14 N -0.396 5.396 15 C 0.318 3.682 16 O -0.389 6.389 17 C -0.304 4.304 18 S 0.167 5.833 19 C -0.684 4.684 20 H 0.091 0.909 21 C -0.136 4.136 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.196 1.196 25 H -0.205 1.205 26 H -0.205 1.205 27 N -0.135 5.135 28 H 0.252 0.748 29 H 0.095 0.905 30 H 0.104 0.896 31 H 0.088 0.912 32 H 0.160 0.840 33 H 0.086 0.914 34 H 0.098 0.902 35 H 0.080 0.920 36 H 0.229 0.771 37 H 0.091 0.909 38 H 0.085 0.915 39 H 0.079 0.921 40 H 0.102 0.898 41 H 0.090 0.910 42 H 0.233 0.767 43 H 0.106 0.894 44 H 0.108 0.892 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 1.273 18.093 18.694 26.047 hybrid contribution -1.328 1.351 -1.771 2.593 sum -0.055 19.444 16.923 25.777 Atomic orbital electron populations 1.20451 0.87536 1.03921 1.03101 1.20560 0.93730 0.86166 1.05431 1.20590 0.91796 0.98011 1.13118 1.19949 0.95524 0.91025 1.01100 1.20356 0.94576 0.97508 1.02333 1.20103 0.82805 0.94145 1.20718 1.17031 0.87586 0.81191 0.76060 1.90819 1.24139 1.74961 1.50191 1.46024 1.09862 1.05817 1.76495 1.21268 0.88543 0.89348 0.97936 0.88313 1.22109 1.01839 1.02922 0.95057 1.21627 1.00006 0.95512 0.84071 1.46019 1.65861 1.09950 1.17767 1.20334 0.77122 0.84245 0.86502 1.90712 1.53607 1.23337 1.71249 1.23533 1.03178 1.08250 0.95474 1.85395 1.79937 1.00566 1.17387 1.22903 1.47481 0.95760 1.02229 0.90887 1.24999 0.95306 0.94505 0.98776 1.70021 1.43877 1.00387 1.35975 0.86112 0.78606 0.78798 0.81963 1.19602 1.20514 1.20547 1.41886 1.05418 1.08487 1.57693 0.74795 0.90537 0.89636 0.91239 0.83987 0.91424 0.90169 0.92034 0.77058 0.90905 0.91451 0.92110 0.89765 0.90975 0.76732 0.89369 0.89180 0.92196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.44 10.41 36.01 0.37 -0.06 16 2 C 0.06 0.45 7.13 -81.95 -0.58 -0.14 16 3 C -0.21 -1.85 10.66 -39.98 -0.43 -2.27 16 4 C -0.07 -0.70 6.21 -104.16 -0.65 -1.34 16 5 C -0.09 -0.86 9.83 36.01 0.35 -0.51 16 6 C -0.07 -0.66 7.06 -81.98 -0.58 -1.24 16 7 C 0.59 6.33 7.75 -12.85 -0.10 6.23 16 8 O -0.52 -7.07 14.46 5.19 0.08 -7.00 16 9 N -0.73 -6.04 4.51 -55.11 -0.25 -6.28 16 10 C 0.13 1.15 2.73 -67.93 -0.19 0.96 16 11 H 0.10 0.98 7.58 -51.93 -0.39 0.58 16 12 C -0.16 -1.22 9.48 37.16 0.35 -0.87 16 13 C 0.11 1.15 5.23 -4.04 -0.02 1.13 16 14 N -0.74 -9.16 5.39 -60.30 -0.32 -9.49 16 15 C 0.53 9.44 7.85 -10.99 -0.09 9.35 16 16 O -0.52 -11.18 15.86 5.56 0.09 -11.09 16 17 C -0.15 -3.02 6.16 36.01 0.22 -2.80 16 18 S -0.06 -1.59 20.57 -107.50 -2.21 -3.80 16 19 C -0.54 -15.09 9.50 30.94 0.29 -14.80 16 20 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 21 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 22 N -0.87 -25.91 13.22 55.49 0.73 -25.17 16 23 Si 0.92 21.23 29.55 -169.99 -5.02 16.20 16 24 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 25 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 26 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 27 N -0.54 -4.09 5.99 -5.69 -0.03 -4.12 16 28 H 0.41 2.16 8.19 -40.82 -0.33 1.83 16 29 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 31 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.14 0.99 8.06 -52.48 -0.42 0.57 16 33 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.08 0.87 6.49 -51.93 -0.34 0.54 16 35 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.40 2.63 7.73 -40.82 -0.32 2.32 16 37 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 38 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 41 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.40 4.25 8.14 -40.82 -0.33 3.91 16 43 H 0.09 1.58 8.14 -51.91 -0.42 1.16 16 44 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16 45 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 396.37 15.07 5.97 5.97 Total: -1.00 -36.15 396.37 -8.85 -45.00 By element: Atomic # 1 Polarization: 10.91 SS G_CDS: -6.75 Total: 4.15 kcal Atomic # 6 Polarization: -3.24 SS G_CDS: -1.13 Total: -4.37 kcal Atomic # 7 Polarization: -45.20 SS G_CDS: 0.13 Total: -45.07 kcal Atomic # 8 Polarization: -18.25 SS G_CDS: 0.16 Total: -18.09 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.20 kcal Atomic # 16 Polarization: -1.59 SS G_CDS: -2.21 Total: -3.80 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -36.15 -8.85 -45.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001579333440.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.684 kcal (2) G-P(sol) polarization free energy of solvation -36.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds