Wall clock time and date at job start Sat Apr 11 2020 05:39:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.35456 * 125.56024 * 2 1 4 4 C 1.39832 * 107.86346 * 180.15427 * 3 2 1 5 5 C 1.50703 * 126.45781 * 179.86838 * 4 3 2 6 6 C 1.37873 * 107.08327 * 359.60276 * 4 3 2 7 7 C 1.46681 * 126.23113 * 180.24580 * 6 4 3 8 8 O 1.21694 * 120.00025 * 359.97438 * 7 6 4 9 9 N 1.34776 * 119.99898 * 179.97438 * 7 6 4 10 10 C 1.46497 * 119.99884 * 179.97438 * 9 7 6 11 11 H 1.09003 * 109.47644 * 325.00519 * 10 9 7 12 12 C 1.53001 * 109.47118 * 85.00260 * 10 9 7 13 13 C 1.53000 * 109.47400 * 205.00181 * 10 9 7 14 14 N 1.46497 * 109.46936 * 54.99787 * 13 10 9 15 15 C 1.34775 * 120.00028 * 180.02562 * 14 13 10 16 16 O 1.21279 * 119.99870 * 0.02562 * 15 14 13 17 17 C 1.50702 * 120.00115 * 180.02562 * 15 14 13 18 18 S 1.81006 * 109.46892 * 179.97438 * 17 15 14 19 19 C 1.76205 * 99.99435 * 179.97438 * 18 17 15 20 20 H 1.07998 * 120.00442 * 359.97438 * 19 18 17 21 21 C 1.38806 * 119.99340 * 179.97438 * 19 18 17 22 22 N 1.31625 * 120.00312 * 0.02562 * 21 19 18 23 23 Si 1.86806 * 119.99593 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47108 * 0.02562 * 23 21 19 25 25 H 1.48498 * 109.46867 * 120.00179 * 23 21 19 26 26 H 1.48491 * 109.47014 * 240.00114 * 23 21 19 27 27 N 1.35532 * 125.56743 * 179.70847 * 2 1 3 28 28 H 0.96997 * 125.67526 * 359.97438 * 27 2 1 29 29 H 1.09000 * 109.46716 * 270.28834 * 1 2 3 30 30 H 1.08998 * 109.47508 * 30.28786 * 1 2 3 31 31 H 1.09005 * 109.47054 * 150.29346 * 1 2 3 32 32 H 1.08006 * 126.06816 * 0.02857 * 3 2 1 33 33 H 1.09002 * 109.47152 * 269.68312 * 5 4 3 34 34 H 1.09001 * 109.46980 * 149.68412 * 5 4 3 35 35 H 1.09004 * 109.47113 * 29.68393 * 5 4 3 36 36 H 0.96998 * 120.00173 * 0.02562 * 9 7 6 37 37 H 1.08998 * 109.47431 * 179.97438 * 12 10 9 38 38 H 1.09007 * 109.47234 * 299.99772 * 12 10 9 39 39 H 1.08994 * 109.47233 * 59.99605 * 12 10 9 40 40 H 1.08995 * 109.47282 * 175.00402 * 13 10 9 41 41 H 1.09004 * 109.46537 * 295.00373 * 13 10 9 42 42 H 0.97001 * 120.00256 * 0.02562 * 14 13 10 43 43 H 1.09006 * 109.46758 * 299.99386 * 17 15 14 44 44 H 1.08993 * 109.47553 * 59.99656 * 17 15 14 45 45 H 0.97000 * 120.00196 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2948 1.1019 0.0000 4 6 3.6269 0.6769 -0.0036 5 6 4.8485 1.5594 -0.0077 6 6 3.6122 -0.7018 0.0034 7 6 4.7860 -1.5813 0.0079 8 8 5.9049 -1.1027 0.0050 9 7 4.6254 -2.9194 0.0152 10 6 5.7978 -3.7979 0.0191 11 1 6.5930 -3.3452 -0.5733 12 6 6.2823 -3.9954 1.4569 13 6 5.4217 -5.1532 -0.5830 14 7 4.8462 -4.9529 -1.9152 15 6 4.4388 -6.0137 -2.6398 16 8 4.5481 -7.1342 -2.1887 17 6 3.8474 -5.8077 -4.0105 18 16 3.4023 -7.4111 -4.7227 19 6 2.7549 -6.8870 -6.2754 20 1 2.7291 -5.8360 -6.5228 21 6 2.2781 -7.8249 -7.1808 22 7 2.3091 -9.1058 -6.8792 23 14 1.5924 -7.2693 -8.8272 24 1 1.6700 -5.7894 -8.9217 25 1 2.3868 -7.8773 -9.9247 26 1 0.1761 -7.6998 -8.9442 27 7 2.2954 -1.1024 0.0056 28 1 1.9834 -2.0209 0.0106 29 1 -0.3633 0.0052 1.0277 30 1 -0.3634 0.8874 -0.5183 31 1 -0.3633 -0.8926 -0.5093 32 1 1.9544 2.1270 0.0004 33 1 5.1434 1.7669 -1.0363 34 1 5.6640 1.0534 0.5090 35 1 4.6217 2.4962 0.5013 36 1 3.7336 -3.3009 0.0172 37 1 7.1543 -4.6493 1.4599 38 1 6.5504 -3.0298 1.8859 39 1 5.4872 -4.4479 2.0493 40 1 6.3129 -5.7756 -0.6619 41 1 4.6904 -5.6452 0.0584 42 1 4.7585 -4.0567 -2.2759 43 1 2.9563 -5.1847 -3.9318 44 1 4.5789 -5.3162 -4.6518 45 1 1.9756 -9.7612 -7.5117 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001579333440.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:46 Heat of formation + Delta-G solvation = -72.769383 kcal Electronic energy + Delta-G solvation = -26295.477709 eV Core-core repulsion = 22438.165278 eV Total energy + Delta-G solvation = -3857.312432 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.43235 -40.92624 -40.15330 -37.51174 -34.96295 -34.59806 -33.69428 -33.03912 -31.78964 -30.80498 -28.62085 -27.76106 -27.37019 -26.78973 -23.36807 -21.95199 -21.77756 -21.31559 -20.37935 -19.84876 -19.36088 -17.87366 -17.62818 -17.21504 -16.89515 -16.49370 -16.40609 -16.18816 -15.83184 -15.34035 -15.11813 -14.87003 -14.56141 -14.33963 -14.27200 -13.99912 -13.93685 -13.83011 -13.63441 -13.53202 -13.29212 -13.17743 -13.07936 -12.98010 -12.92549 -12.91688 -12.60876 -12.40113 -12.11423 -11.72524 -11.17390 -11.06285 -11.03378 -10.34686 -10.29716 -10.21059 -9.71915 -8.97898 -8.68131 -8.36606 -6.14335 0.41104 1.24856 1.40141 1.45249 1.55795 1.56606 1.72406 1.93745 2.13938 2.23525 2.26546 2.32484 2.97826 3.29426 3.49479 3.86354 3.92201 3.95601 4.01149 4.18869 4.21742 4.26010 4.28428 4.47698 4.53799 4.62772 4.65129 4.72653 4.80287 4.82550 4.89860 4.90980 4.96939 5.14413 5.18876 5.21024 5.32469 5.37643 5.40698 5.47313 5.80610 5.96643 6.18355 6.36094 6.38459 6.55672 7.05231 7.08226 7.15730 8.72716 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010632 B = 0.002519 C = 0.002178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2632.961785 B =11114.657548 C =12854.450602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.067 3.933 3 C -0.227 4.227 4 C -0.089 4.089 5 C -0.087 4.087 6 C -0.087 4.087 7 C 0.593 3.407 8 O -0.559 6.559 9 N -0.718 5.718 10 C 0.144 3.856 11 H 0.089 0.911 12 C -0.155 4.155 13 C 0.116 3.884 14 N -0.715 5.715 15 C 0.537 3.463 16 O -0.559 6.559 17 C -0.132 4.132 18 S -0.146 6.146 19 C -0.546 4.546 20 H 0.081 0.919 21 C 0.014 3.986 22 N -0.910 5.910 23 Si 0.997 3.003 24 H -0.258 1.258 25 H -0.275 1.275 26 H -0.273 1.273 27 N -0.529 5.529 28 H 0.426 0.574 29 H 0.089 0.911 30 H 0.095 0.905 31 H 0.077 0.923 32 H 0.157 0.843 33 H 0.064 0.936 34 H 0.062 0.938 35 H 0.077 0.923 36 H 0.406 0.594 37 H 0.083 0.917 38 H 0.055 0.945 39 H 0.070 0.930 40 H 0.083 0.917 41 H 0.079 0.921 42 H 0.411 0.589 43 H 0.110 0.890 44 H 0.104 0.896 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.021 21.787 17.976 28.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.052 4.052 3 C -0.251 4.251 4 C -0.098 4.098 5 C -0.144 4.144 6 C -0.199 4.199 7 C 0.383 3.617 8 O -0.438 6.438 9 N -0.371 5.371 10 C 0.039 3.961 11 H 0.107 0.893 12 C -0.214 4.214 13 C -0.008 4.008 14 N -0.369 5.369 15 C 0.323 3.677 16 O -0.437 6.437 17 C -0.283 4.283 18 S 0.082 5.918 19 C -0.694 4.694 20 H 0.099 0.901 21 C -0.191 4.191 22 N -0.547 5.547 23 Si 0.819 3.181 24 H -0.182 1.182 25 H -0.200 1.200 26 H -0.198 1.198 27 N -0.127 5.127 28 H 0.265 0.735 29 H 0.108 0.892 30 H 0.114 0.886 31 H 0.096 0.904 32 H 0.174 0.826 33 H 0.083 0.917 34 H 0.080 0.920 35 H 0.095 0.905 36 H 0.241 0.759 37 H 0.102 0.898 38 H 0.074 0.926 39 H 0.089 0.911 40 H 0.101 0.899 41 H 0.097 0.903 42 H 0.247 0.753 43 H 0.128 0.872 44 H 0.123 0.877 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -0.044 19.894 18.702 27.304 hybrid contribution -0.905 0.891 -1.651 2.083 sum -0.949 20.784 17.050 26.900 Atomic orbital electron populations 1.20563 0.85232 1.04830 1.04206 1.21063 0.95066 0.85719 1.03366 1.20852 0.91286 0.99246 1.13713 1.20246 0.96417 0.91534 1.01590 1.20303 0.94026 0.98028 1.02058 1.20030 0.83504 0.94128 1.22217 1.17143 0.87345 0.81696 0.75565 1.90802 1.25412 1.75614 1.51954 1.45899 1.10331 1.05124 1.75708 1.21145 0.88297 0.88187 0.98445 0.89294 1.22062 1.02657 1.02635 0.94047 1.21750 0.99996 0.96444 0.82642 1.45745 1.63938 1.09183 1.18006 1.19976 0.77132 0.84552 0.86050 1.90706 1.55771 1.25205 1.71990 1.23382 1.04593 1.03863 0.96484 1.85536 1.80590 1.07135 1.18580 1.23224 1.47438 0.96218 1.02530 0.90092 1.26104 0.95452 0.94451 1.03056 1.70175 1.45040 1.01841 1.37619 0.84923 0.77842 0.78927 0.76376 1.18160 1.20020 1.19790 1.41877 1.04577 1.09248 1.57014 0.73495 0.89234 0.88615 0.90445 0.82579 0.91747 0.91953 0.90453 0.75878 0.89811 0.92557 0.91065 0.89875 0.90268 0.75303 0.87206 0.87735 0.91954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.59 10.41 71.24 0.74 0.15 16 2 C 0.07 0.87 7.13 41.34 0.29 1.17 16 3 C -0.23 -3.65 10.66 22.01 0.23 -3.41 16 4 C -0.09 -1.79 6.21 -19.56 -0.12 -1.91 16 5 C -0.09 -1.67 9.83 71.24 0.70 -0.97 16 6 C -0.09 -1.67 7.06 40.35 0.28 -1.39 16 7 C 0.59 12.29 7.75 86.45 0.67 12.96 16 8 O -0.56 -15.17 14.46 -4.33 -0.06 -15.23 16 9 N -0.72 -10.82 4.51 -446.50 -2.02 -12.83 16 10 C 0.14 2.26 2.73 44.99 0.12 2.39 16 11 H 0.09 1.66 7.58 -2.39 -0.02 1.64 16 12 C -0.16 -2.13 9.48 71.98 0.68 -1.45 16 13 C 0.12 2.16 5.23 86.38 0.45 2.61 16 14 N -0.71 -16.32 5.39 -463.07 -2.49 -18.81 16 15 C 0.54 18.48 7.85 87.66 0.69 19.16 16 16 O -0.56 -24.25 15.86 -3.03 -0.05 -24.29 16 17 C -0.13 -5.04 6.16 71.24 0.44 -4.60 16 18 S -0.15 -7.89 20.57 -56.49 -1.16 -9.05 16 19 C -0.55 -30.73 9.50 67.96 0.65 -30.09 16 20 H 0.08 4.26 7.80 -2.91 -0.02 4.23 16 21 C 0.01 0.80 5.49 84.86 0.47 1.27 16 22 N -0.91 -55.18 13.22 21.65 0.29 -54.89 16 23 Si 1.00 43.08 29.55 68.60 2.03 45.10 16 24 H -0.26 -10.44 7.11 99.48 0.71 -9.73 16 25 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 26 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 27 N -0.53 -7.08 5.99 -171.93 -1.03 -8.11 16 28 H 0.43 3.47 8.19 -92.71 -0.76 2.71 16 29 H 0.09 0.40 8.14 -2.39 -0.02 0.38 16 30 H 0.10 0.47 8.14 -2.39 -0.02 0.45 16 31 H 0.08 0.41 8.14 -2.38 -0.02 0.39 16 32 H 0.16 1.91 8.06 -2.91 -0.02 1.89 16 33 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.06 1.41 6.49 -2.39 -0.02 1.39 16 35 H 0.08 1.16 8.14 -2.38 -0.02 1.14 16 36 H 0.41 4.53 7.73 -92.71 -0.72 3.82 16 37 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 38 H 0.06 0.94 8.14 -2.38 -0.02 0.92 16 39 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 40 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 41 H 0.08 1.46 8.14 -2.38 -0.02 1.44 16 42 H 0.41 7.74 8.14 -92.71 -0.75 6.98 16 43 H 0.11 3.72 8.14 -2.39 -0.02 3.70 16 44 H 0.10 3.70 8.14 -2.40 -0.02 3.68 16 45 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 Total: -1.00 -80.21 396.37 0.61 -79.60 By element: Atomic # 1 Polarization: 23.80 SS G_CDS: -1.19 Total: 22.61 kcal Atomic # 6 Polarization: -10.40 SS G_CDS: 6.30 Total: -4.10 kcal Atomic # 7 Polarization: -89.39 SS G_CDS: -5.25 Total: -94.64 kcal Atomic # 8 Polarization: -39.42 SS G_CDS: -0.11 Total: -39.53 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.10 kcal Atomic # 16 Polarization: -7.89 SS G_CDS: -1.16 Total: -9.05 kcal Total: -80.21 0.61 -79.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001579333440.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.833 kcal (2) G-P(sol) polarization free energy of solvation -80.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds