Wall clock time and date at job start Sat Apr 11 2020 05:39:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00058 * 2 1 4 4 H 1.48500 * 109.47235 * 269.99943 * 3 2 1 5 5 H 1.48494 * 109.47211 * 30.00394 * 3 2 1 6 6 H 1.48506 * 109.47046 * 150.00168 * 3 2 1 7 7 C 1.37880 * 119.99973 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00045 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99929 * 359.97438 * 7 2 1 10 10 N 1.46493 * 109.46935 * 179.97438 * 9 7 2 11 11 C 1.46504 * 120.00324 * 269.99839 * 10 9 7 12 12 C 1.50702 * 109.46992 * 269.99989 * 11 10 9 13 13 C 1.34514 * 125.78386 * 89.99906 * 12 11 10 14 14 C 1.41387 * 106.83933 * 179.97438 * 13 12 11 15 15 C 1.34515 * 106.83926 * 359.97438 * 14 13 12 16 16 O 1.34301 * 125.79282 * 269.69225 * 12 11 10 17 17 C 1.34782 * 119.99729 * 90.00414 * 10 9 7 18 18 O 1.21278 * 120.00162 * 359.97438 * 17 10 9 19 19 C 1.50699 * 119.99762 * 179.97438 * 17 10 9 20 20 C 1.50706 * 109.47222 * 179.97438 * 19 17 10 21 21 C 1.38541 * 126.21162 * 265.00260 * 20 19 17 22 22 N 1.31486 * 109.00658 * 179.97438 * 21 20 19 23 23 N 1.40040 * 108.91563 * 359.97438 * 22 21 20 24 24 C 1.36529 * 132.43543 * 179.97438 * 23 22 21 25 25 C 1.34934 * 120.66189 * 179.97438 * 24 23 22 26 26 C 1.40473 * 120.43067 * 0.02562 * 25 24 23 27 27 C 1.36056 * 119.59175 * 0.02562 * 26 25 24 28 28 C 1.37140 * 107.44206 * 0.02562 * 23 22 21 29 29 H 0.96998 * 119.99559 * 359.97438 * 1 2 3 30 30 H 1.09000 * 109.47017 * 59.99728 * 9 7 2 31 31 H 1.08998 * 109.47230 * 300.00014 * 9 7 2 32 32 H 1.09000 * 109.46853 * 30.00145 * 11 10 9 33 33 H 1.08997 * 109.47083 * 150.00531 * 11 10 9 34 34 H 1.08000 * 126.58389 * 359.97035 * 13 12 11 35 35 H 1.08000 * 126.58266 * 179.97438 * 14 13 12 36 36 H 1.07999 * 125.78666 * 179.97438 * 15 14 13 37 37 H 1.09001 * 109.47571 * 59.99817 * 19 17 10 38 38 H 1.09001 * 109.47439 * 299.99372 * 19 17 10 39 39 H 1.08003 * 125.50011 * 359.97438 * 21 20 19 40 40 H 1.07997 * 119.66852 * 0.02562 * 24 23 22 41 41 H 1.08000 * 119.78550 * 179.75136 * 25 24 23 42 42 H 1.07998 * 120.20517 * 179.97438 * 26 25 24 43 43 H 1.08001 * 120.39088 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2030 -3.6126 -0.0018 11 6 2.6780 -4.1689 -1.2711 12 6 1.7610 -5.2830 -1.7058 13 6 0.6678 -5.1459 -2.4776 14 6 0.1129 -6.4368 -2.6347 15 6 0.9005 -7.2855 -1.9500 16 8 1.8998 -6.5817 -1.3933 17 6 2.6417 -4.1254 1.1649 18 8 2.2488 -3.6647 2.2157 19 6 3.6206 -5.2712 1.1637 20 6 3.9486 -5.6532 2.5841 21 6 5.0331 -5.2072 3.3220 22 7 4.9909 -5.7526 4.5177 23 7 3.8646 -6.5808 4.5994 24 6 3.3674 -7.3635 5.6015 25 6 2.2381 -8.0793 5.4196 26 6 1.5547 -8.0308 4.1933 27 6 2.0384 -7.2562 3.1848 28 6 3.2181 -6.5158 3.3917 29 1 -0.4849 0.8401 0.0004 30 1 0.6240 -2.5567 -0.8903 31 1 0.6247 -2.5571 0.8897 32 1 2.6852 -3.3869 -2.0304 33 1 3.6875 -4.5590 -1.1417 34 1 0.2870 -4.2263 -2.8968 35 1 -0.7733 -6.6925 -3.1966 36 1 0.7555 -8.3523 -1.8649 37 1 4.5328 -4.9693 0.6491 38 1 3.1795 -6.1254 0.6500 39 1 5.7909 -4.5221 2.9717 40 1 3.8827 -7.4096 6.5495 41 1 1.8596 -8.6970 6.2206 42 1 0.6514 -8.6056 4.0516 43 1 1.5231 -7.2090 2.2368 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001583777218.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:51 Heat of formation + Delta-G solvation = 94.198571 kcal Electronic energy + Delta-G solvation = -29042.056325 eV Core-core repulsion = 25056.540216 eV Total energy + Delta-G solvation = -3985.516109 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.32935 -41.89919 -38.91016 -37.15193 -35.15309 -33.43389 -32.80990 -32.63490 -30.73129 -30.50243 -30.10377 -27.71254 -26.18894 -25.26928 -23.73264 -22.93313 -22.36563 -21.48812 -20.66093 -20.41535 -18.49416 -17.33090 -17.05450 -16.69585 -16.49757 -16.23696 -15.98663 -15.65236 -15.36175 -15.08509 -14.83876 -14.56644 -14.26913 -13.87549 -13.33399 -13.11671 -12.73502 -12.62396 -12.58301 -12.53300 -12.28857 -12.11921 -11.75316 -11.69766 -11.51645 -11.41607 -11.19988 -10.89503 -10.59904 -10.49388 -10.32738 -10.16744 -9.71942 -9.64496 -9.23974 -8.89400 -8.43377 -8.30370 -7.75589 -7.37022 -6.03909 -4.08581 0.80743 1.16898 1.90058 2.35788 2.80667 2.84806 3.14384 3.30551 3.37786 3.40607 3.42798 3.53833 4.10012 4.28473 4.46259 4.67273 4.72484 4.88714 4.92666 5.05374 5.14317 5.25018 5.28251 5.31178 5.37854 5.44589 5.51616 5.56098 5.63536 5.83288 5.87822 5.96121 6.01101 6.09860 6.18814 6.28633 6.32168 6.41081 6.67441 6.71551 6.96620 7.06176 7.32452 7.46525 7.53761 7.67478 7.92721 8.23394 8.37612 8.91615 9.12285 9.56747 11.04242 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.008736 B = 0.004260 C = 0.003203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3204.256245 B = 6571.690801 C = 8738.730653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.062 3.938 3 Si 0.897 3.103 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.526 4.526 8 H 0.059 0.941 9 C 0.248 3.752 10 N -0.597 5.597 11 C 0.191 3.809 12 C -0.024 4.024 13 C -0.195 4.195 14 C -0.212 4.212 15 C -0.052 4.052 16 O -0.177 6.177 17 C 0.508 3.492 18 O -0.525 6.525 19 C -0.062 4.062 20 C -0.216 4.216 21 C 0.092 3.908 22 N -0.324 5.324 23 N -0.276 5.276 24 C 0.108 3.892 25 C -0.168 4.168 26 C -0.094 4.094 27 C -0.098 4.098 28 C 0.115 3.885 29 H 0.263 0.737 30 H 0.032 0.968 31 H 0.042 0.958 32 H 0.115 0.885 33 H 0.085 0.915 34 H 0.149 0.851 35 H 0.144 0.856 36 H 0.197 0.803 37 H 0.096 0.904 38 H 0.094 0.906 39 H 0.190 0.810 40 H 0.164 0.836 41 H 0.151 0.849 42 H 0.138 0.862 43 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.477 -19.717 0.454 20.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.140 4.140 3 Si 0.724 3.276 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.565 4.565 8 H 0.077 0.923 9 C 0.129 3.871 10 N -0.329 5.329 11 C 0.066 3.934 12 C -0.076 4.076 13 C -0.215 4.215 14 C -0.232 4.232 15 C -0.120 4.120 16 O -0.073 6.073 17 C 0.295 3.705 18 O -0.401 6.401 19 C -0.103 4.103 20 C -0.228 4.228 21 C -0.085 4.085 22 N -0.148 5.148 23 N -0.043 5.043 24 C -0.017 4.017 25 C -0.190 4.190 26 C -0.117 4.117 27 C -0.118 4.118 28 C -0.004 4.004 29 H 0.072 0.928 30 H 0.050 0.950 31 H 0.061 0.939 32 H 0.133 0.867 33 H 0.103 0.897 34 H 0.167 0.833 35 H 0.161 0.839 36 H 0.214 0.786 37 H 0.114 0.886 38 H 0.113 0.887 39 H 0.207 0.793 40 H 0.181 0.819 41 H 0.168 0.832 42 H 0.155 0.845 43 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 5.050 -19.408 2.372 20.194 hybrid contribution -0.420 1.087 -0.998 1.535 sum 4.629 -18.321 1.374 18.947 Atomic orbital electron populations 1.69937 1.06007 1.26977 1.50394 1.24925 0.94844 0.99175 0.95069 0.86518 0.79917 0.83154 0.77972 1.20624 1.21169 1.19856 1.21438 0.93397 0.90587 1.51094 0.92315 1.19280 0.87420 0.81943 0.98465 1.48325 1.46458 1.34819 1.03302 1.19892 0.94041 0.90524 0.88977 1.23351 1.00731 0.82711 1.00773 1.21706 0.97124 0.98865 1.03791 1.21824 1.02764 0.93279 1.05304 1.23914 0.89939 0.97769 1.00398 1.83996 1.44455 1.18703 1.60169 1.20460 0.82330 0.83771 0.83968 1.90681 1.57642 1.60979 1.30755 1.20006 0.99703 0.97899 0.92673 1.19313 0.99205 1.06279 0.97955 1.23626 0.97864 0.96828 0.90153 1.77810 1.03397 1.12603 1.20954 1.46085 1.18329 1.30163 1.09715 1.21395 0.95847 0.92071 0.92356 1.20762 0.95724 1.02946 0.99530 1.21076 0.99835 0.98253 0.92524 1.20624 0.93906 0.96249 1.01038 1.19238 0.94805 0.99501 0.86841 0.92752 0.94983 0.93947 0.86683 0.89705 0.83290 0.83856 0.78624 0.88551 0.88744 0.79338 0.81873 0.83170 0.84451 0.83977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.41 13.29 55.43 0.74 -25.68 16 2 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 3 Si 0.90 21.72 29.54 -169.99 -5.02 16.70 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.27 -6.63 7.11 56.52 0.40 -6.22 16 7 C -0.53 -14.61 9.39 -34.44 -0.32 -14.93 16 8 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 9 C 0.25 6.36 5.16 -5.20 -0.03 6.33 16 10 N -0.60 -12.29 2.44 -176.43 -0.43 -12.72 16 11 C 0.19 2.99 5.74 -5.19 -0.03 2.96 16 12 C -0.02 -0.37 6.85 -35.62 -0.24 -0.61 16 13 C -0.19 -2.93 10.81 -39.70 -0.43 -3.36 16 14 C -0.21 -2.70 10.91 -39.70 -0.43 -3.14 16 15 C -0.05 -0.61 12.09 29.42 0.36 -0.25 16 16 O -0.18 -2.45 9.55 5.71 0.05 -2.39 16 17 C 0.51 10.58 7.66 -10.98 -0.08 10.50 16 18 O -0.53 -13.54 15.61 5.56 0.09 -13.46 16 19 C -0.06 -0.96 4.74 -29.03 -0.14 -1.10 16 20 C -0.22 -3.58 4.68 -104.25 -0.49 -4.07 16 21 C 0.09 1.46 11.87 -17.59 -0.21 1.25 16 22 N -0.32 -5.44 12.66 30.46 0.39 -5.05 16 23 N -0.28 -4.30 3.90 -10.71 -0.04 -4.34 16 24 C 0.11 1.25 11.19 -16.63 -0.19 1.07 16 25 C -0.17 -1.58 9.98 -39.91 -0.40 -1.98 16 26 C -0.09 -0.99 10.07 -39.52 -0.40 -1.38 16 27 C -0.10 -1.33 10.09 -39.40 -0.40 -1.73 16 28 C 0.11 1.85 6.76 -84.27 -0.57 1.28 16 29 H 0.26 7.35 8.31 -40.82 -0.34 7.02 16 30 H 0.03 0.83 8.07 -51.93 -0.42 0.41 16 31 H 0.04 1.26 7.42 -51.93 -0.39 0.87 16 32 H 0.12 1.76 8.07 -51.93 -0.42 1.35 16 33 H 0.08 1.08 6.44 -51.93 -0.33 0.74 16 34 H 0.15 2.25 8.06 -52.49 -0.42 1.83 16 35 H 0.14 1.50 8.06 -52.49 -0.42 1.07 16 36 H 0.20 1.45 8.06 -52.49 -0.42 1.03 16 37 H 0.10 1.25 7.40 -51.93 -0.38 0.86 16 38 H 0.09 1.34 6.93 -51.93 -0.36 0.98 16 39 H 0.19 2.43 8.06 -52.48 -0.42 2.01 16 40 H 0.16 1.39 8.06 -52.49 -0.42 0.96 16 41 H 0.15 0.85 8.06 -52.49 -0.42 0.43 16 42 H 0.14 1.02 8.06 -52.49 -0.42 0.60 16 43 H 0.14 1.82 8.06 -52.49 -0.42 1.39 16 LS Contribution 376.67 15.07 5.68 5.68 Total: -1.00 -37.05 376.67 -7.88 -44.93 By element: Atomic # 1 Polarization: 9.08 SS G_CDS: -5.23 Total: 3.85 kcal Atomic # 6 Polarization: -3.41 SS G_CDS: -4.10 Total: -7.51 kcal Atomic # 7 Polarization: -48.44 SS G_CDS: 0.65 Total: -47.79 kcal Atomic # 8 Polarization: -15.99 SS G_CDS: 0.14 Total: -15.85 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -37.05 -7.88 -44.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001583777218.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.129 kcal (2) G-P(sol) polarization free energy of solvation -37.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.931 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds