Wall clock time and date at job start Sat Apr 11 2020 05:39:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00058 * 2 1 4 4 H 1.48500 * 109.47235 * 269.99943 * 3 2 1 5 5 H 1.48494 * 109.47211 * 30.00394 * 3 2 1 6 6 H 1.48506 * 109.47046 * 150.00168 * 3 2 1 7 7 C 1.37880 * 119.99973 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00045 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99929 * 359.97438 * 7 2 1 10 10 N 1.46493 * 109.46935 * 179.97438 * 9 7 2 11 11 C 1.46504 * 120.00324 * 269.99839 * 10 9 7 12 12 C 1.50702 * 109.46992 * 269.99989 * 11 10 9 13 13 C 1.34514 * 125.78386 * 89.99906 * 12 11 10 14 14 C 1.41387 * 106.83933 * 179.97438 * 13 12 11 15 15 C 1.34515 * 106.83926 * 359.97438 * 14 13 12 16 16 O 1.34301 * 125.79282 * 269.69225 * 12 11 10 17 17 C 1.34782 * 119.99729 * 90.00414 * 10 9 7 18 18 O 1.21278 * 120.00162 * 359.97438 * 17 10 9 19 19 C 1.50699 * 119.99762 * 179.97438 * 17 10 9 20 20 C 1.50706 * 109.47222 * 179.97438 * 19 17 10 21 21 C 1.38541 * 126.21162 * 265.00260 * 20 19 17 22 22 N 1.31486 * 109.00658 * 179.97438 * 21 20 19 23 23 N 1.40040 * 108.91563 * 359.97438 * 22 21 20 24 24 C 1.36529 * 132.43543 * 179.97438 * 23 22 21 25 25 C 1.34934 * 120.66189 * 179.97438 * 24 23 22 26 26 C 1.40473 * 120.43067 * 0.02562 * 25 24 23 27 27 C 1.36056 * 119.59175 * 0.02562 * 26 25 24 28 28 C 1.37140 * 107.44206 * 0.02562 * 23 22 21 29 29 H 0.96998 * 119.99559 * 359.97438 * 1 2 3 30 30 H 1.09000 * 109.47017 * 59.99728 * 9 7 2 31 31 H 1.08998 * 109.47230 * 300.00014 * 9 7 2 32 32 H 1.09000 * 109.46853 * 30.00145 * 11 10 9 33 33 H 1.08997 * 109.47083 * 150.00531 * 11 10 9 34 34 H 1.08000 * 126.58389 * 359.97035 * 13 12 11 35 35 H 1.08000 * 126.58266 * 179.97438 * 14 13 12 36 36 H 1.07999 * 125.78666 * 179.97438 * 15 14 13 37 37 H 1.09001 * 109.47571 * 59.99817 * 19 17 10 38 38 H 1.09001 * 109.47439 * 299.99372 * 19 17 10 39 39 H 1.08003 * 125.50011 * 359.97438 * 21 20 19 40 40 H 1.07997 * 119.66852 * 0.02562 * 24 23 22 41 41 H 1.08000 * 119.78550 * 179.75136 * 25 24 23 42 42 H 1.07998 * 120.20517 * 179.97438 * 26 25 24 43 43 H 1.08001 * 120.39088 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2030 -3.6126 -0.0018 11 6 2.6780 -4.1689 -1.2711 12 6 1.7610 -5.2830 -1.7058 13 6 0.6678 -5.1459 -2.4776 14 6 0.1129 -6.4368 -2.6347 15 6 0.9005 -7.2855 -1.9500 16 8 1.8998 -6.5817 -1.3933 17 6 2.6417 -4.1254 1.1649 18 8 2.2488 -3.6647 2.2157 19 6 3.6206 -5.2712 1.1637 20 6 3.9486 -5.6532 2.5841 21 6 5.0331 -5.2072 3.3220 22 7 4.9909 -5.7526 4.5177 23 7 3.8646 -6.5808 4.5994 24 6 3.3674 -7.3635 5.6015 25 6 2.2381 -8.0793 5.4196 26 6 1.5547 -8.0308 4.1933 27 6 2.0384 -7.2562 3.1848 28 6 3.2181 -6.5158 3.3917 29 1 -0.4849 0.8401 0.0004 30 1 0.6240 -2.5567 -0.8903 31 1 0.6247 -2.5571 0.8897 32 1 2.6852 -3.3869 -2.0304 33 1 3.6875 -4.5590 -1.1417 34 1 0.2870 -4.2263 -2.8968 35 1 -0.7733 -6.6925 -3.1966 36 1 0.7555 -8.3523 -1.8649 37 1 4.5328 -4.9693 0.6491 38 1 3.1795 -6.1254 0.6500 39 1 5.7909 -4.5221 2.9717 40 1 3.8827 -7.4096 6.5495 41 1 1.8596 -8.6970 6.2206 42 1 0.6514 -8.6056 4.0516 43 1 1.5231 -7.2090 2.2368 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001583777218.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:50 Heat of formation + Delta-G solvation = 71.148712 kcal Electronic energy + Delta-G solvation = -29043.055842 eV Core-core repulsion = 25056.540216 eV Total energy + Delta-G solvation = -3986.515626 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.39275 -42.95491 -40.53316 -38.13121 -36.82591 -34.92567 -34.42455 -33.79515 -31.95624 -31.56469 -31.37589 -29.40313 -27.49417 -26.68371 -24.76741 -24.64995 -23.50173 -22.56802 -21.87865 -21.52663 -19.96123 -18.80606 -18.19634 -18.15386 -17.74449 -17.66908 -17.22108 -16.70838 -16.65916 -16.40959 -16.14142 -16.03943 -15.59626 -15.12794 -14.54790 -14.46038 -14.31210 -13.97682 -13.88380 -13.69244 -13.50912 -13.29335 -13.26513 -12.98087 -12.75227 -12.72342 -12.64356 -12.51722 -12.44293 -12.20730 -11.72681 -11.64569 -11.39701 -10.77677 -10.62104 -10.57722 -10.26498 -9.61546 -9.32454 -8.44249 -8.20688 -6.34618 -0.12315 0.17538 0.81325 1.37553 1.38279 1.40697 1.50663 1.65566 1.75012 1.84358 2.20085 2.37659 2.44273 2.65411 3.09778 3.30361 3.72480 3.82287 3.90431 3.93536 3.99123 4.12874 4.18630 4.21572 4.26632 4.38759 4.41633 4.58167 4.60830 4.72363 4.75330 4.96916 4.98880 5.04992 5.10217 5.13439 5.25097 5.27950 5.32707 5.51646 5.55716 5.59483 5.67262 5.83928 5.97172 6.08316 6.28280 6.57685 6.70992 6.77782 7.31161 7.51553 8.86826 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.008736 B = 0.004260 C = 0.003203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3204.256245 B = 6571.690801 C = 8738.730653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.009 3.991 3 Si 0.965 3.035 4 H -0.261 1.261 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.539 4.539 8 H 0.058 0.942 9 C 0.268 3.732 10 N -0.599 5.599 11 C 0.189 3.811 12 C -0.042 4.042 13 C -0.213 4.213 14 C -0.230 4.230 15 C -0.033 4.033 16 O -0.180 6.180 17 C 0.503 3.497 18 O -0.586 6.586 19 C -0.040 4.040 20 C -0.253 4.253 21 C 0.081 3.919 22 N -0.357 5.357 23 N -0.284 5.284 24 C 0.083 3.917 25 C -0.150 4.150 26 C -0.073 4.073 27 C -0.136 4.136 28 C 0.101 3.899 29 H 0.266 0.734 30 H 0.023 0.977 31 H -0.009 1.009 32 H 0.114 0.886 33 H 0.120 0.880 34 H 0.137 0.863 35 H 0.165 0.835 36 H 0.243 0.757 37 H 0.125 0.875 38 H 0.111 0.889 39 H 0.207 0.793 40 H 0.190 0.810 41 H 0.199 0.801 42 H 0.175 0.825 43 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.911 -22.308 0.542 22.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.190 4.190 3 Si 0.790 3.210 4 H -0.186 1.186 5 H -0.211 1.211 6 H -0.197 1.197 7 C -0.578 4.578 8 H 0.077 0.923 9 C 0.146 3.854 10 N -0.330 5.330 11 C 0.066 3.934 12 C -0.093 4.093 13 C -0.233 4.233 14 C -0.249 4.249 15 C -0.100 4.100 16 O -0.076 6.076 17 C 0.292 3.708 18 O -0.466 6.466 19 C -0.080 4.080 20 C -0.265 4.265 21 C -0.094 4.094 22 N -0.181 5.181 23 N -0.051 5.051 24 C -0.042 4.042 25 C -0.171 4.171 26 C -0.095 4.095 27 C -0.156 4.156 28 C -0.018 4.018 29 H 0.074 0.926 30 H 0.041 0.959 31 H 0.009 0.991 32 H 0.132 0.868 33 H 0.138 0.862 34 H 0.155 0.845 35 H 0.182 0.818 36 H 0.259 0.741 37 H 0.143 0.857 38 H 0.129 0.871 39 H 0.224 0.776 40 H 0.207 0.793 41 H 0.216 0.784 42 H 0.193 0.807 43 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 5.517 -22.032 2.416 22.840 hybrid contribution -0.733 1.684 -0.940 2.063 sum 4.784 -20.347 1.476 20.954 Atomic orbital electron populations 1.70065 1.07619 1.28004 1.51255 1.25833 0.95710 1.02962 0.94524 0.85447 0.78288 0.78448 0.78837 1.18599 1.21052 1.19721 1.21733 0.93488 0.91695 1.50862 0.92331 1.18666 0.87771 0.83562 0.95361 1.48271 1.45441 1.33749 1.05535 1.20074 0.95869 0.90922 0.86565 1.23013 1.01055 0.83354 1.01902 1.21889 0.97561 0.99781 1.04063 1.22115 1.04034 0.92293 1.06474 1.24814 0.87998 0.99330 0.97872 1.83988 1.45256 1.18028 1.60325 1.21446 0.82203 0.84288 0.82817 1.90637 1.59882 1.63151 1.32895 1.19889 0.99088 0.95795 0.93277 1.19480 1.00291 1.08056 0.98685 1.23980 0.98408 0.96970 0.90091 1.77694 1.04801 1.14108 1.21522 1.46382 1.18028 1.30297 1.10408 1.22226 0.97068 0.92061 0.92805 1.21406 0.94022 1.01530 1.00126 1.21649 1.00135 0.96047 0.91707 1.20823 0.94056 0.98164 1.02515 1.19665 0.95460 0.99551 0.87135 0.92557 0.95949 0.99135 0.86841 0.86168 0.84532 0.81765 0.74069 0.85681 0.87118 0.77597 0.79281 0.78421 0.80714 0.84049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.79 13.29 21.45 0.28 -56.51 16 2 C 0.01 0.49 5.46 84.66 0.46 0.96 16 3 Si 0.97 45.23 29.54 68.60 2.03 47.26 16 4 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 5 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 6 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 7 C -0.54 -31.02 9.39 25.60 0.24 -30.78 16 8 H 0.06 3.29 7.81 -2.91 -0.02 3.27 16 9 C 0.27 14.55 5.16 85.64 0.44 15.00 16 10 N -0.60 -25.60 2.44 -830.50 -2.03 -27.63 16 11 C 0.19 5.93 5.74 85.63 0.49 6.43 16 12 C -0.04 -1.26 6.85 24.83 0.17 -1.09 16 13 C -0.21 -6.46 10.81 22.19 0.24 -6.22 16 14 C -0.23 -5.50 10.91 22.19 0.24 -5.26 16 15 C -0.03 -0.67 12.09 66.97 0.81 0.14 16 16 O -0.18 -4.63 9.55 -2.48 -0.02 -4.65 16 17 C 0.50 21.71 7.66 87.66 0.67 22.38 16 18 O -0.59 -32.00 15.61 -3.02 -0.05 -32.05 16 19 C -0.04 -1.24 4.74 29.10 0.14 -1.10 16 20 C -0.25 -8.55 4.68 -19.63 -0.09 -8.64 16 21 C 0.08 2.65 11.87 84.82 1.01 3.66 16 22 N -0.36 -12.23 12.66 -57.54 -0.73 -12.96 16 23 N -0.28 -8.80 3.90 -187.79 -0.73 -9.53 16 24 C 0.08 1.75 11.19 83.20 0.93 2.68 16 25 C -0.15 -2.25 9.98 22.05 0.22 -2.03 16 26 C -0.07 -1.29 10.07 22.31 0.22 -1.06 16 27 C -0.14 -3.55 10.09 22.39 0.23 -3.32 16 28 C 0.10 3.28 6.76 39.10 0.26 3.54 16 29 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 30 H 0.02 1.24 8.07 -2.39 -0.02 1.22 16 31 H -0.01 -0.61 7.42 -2.39 -0.02 -0.63 16 32 H 0.11 3.56 8.07 -2.39 -0.02 3.54 16 33 H 0.12 2.88 6.44 -2.39 -0.02 2.86 16 34 H 0.14 4.37 8.06 -2.91 -0.02 4.35 16 35 H 0.16 3.10 8.06 -2.91 -0.02 3.08 16 36 H 0.24 2.42 8.06 -2.91 -0.02 2.40 16 37 H 0.13 3.08 7.40 -2.39 -0.02 3.06 16 38 H 0.11 3.04 6.93 -2.39 -0.02 3.02 16 39 H 0.21 5.47 8.06 -2.91 -0.02 5.44 16 40 H 0.19 2.78 8.06 -2.91 -0.02 2.76 16 41 H 0.20 1.07 8.06 -2.91 -0.02 1.05 16 42 H 0.18 1.75 8.06 -2.91 -0.02 1.73 16 43 H 0.14 3.56 8.06 -2.91 -0.02 3.54 16 Total: -1.00 -87.23 376.67 6.48 -80.75 By element: Atomic # 1 Polarization: 19.03 SS G_CDS: 1.03 Total: 20.06 kcal Atomic # 6 Polarization: -11.43 SS G_CDS: 6.69 Total: -4.74 kcal Atomic # 7 Polarization: -103.43 SS G_CDS: -3.20 Total: -106.63 kcal Atomic # 8 Polarization: -36.63 SS G_CDS: -0.07 Total: -36.70 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 2.03 Total: 47.26 kcal Total: -87.23 6.48 -80.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001583777218.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.902 kcal (2) G-P(sol) polarization free energy of solvation -87.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.753 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds