Wall clock time and date at job start Sat Apr 11 2020 05:39:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86797 * 119.99966 * 2 1 4 4 H 1.48507 * 109.47014 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47270 * 300.00351 * 3 2 1 6 6 H 1.48498 * 109.47091 * 60.00464 * 3 2 1 7 7 C 1.38895 * 119.99989 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00521 * 187.36290 * 7 2 1 9 9 N 1.37221 * 119.99797 * 7.36272 * 7 2 1 10 10 C 1.34769 * 119.99759 * 230.16789 * 9 7 2 11 11 O 1.21267 * 120.00192 * 184.97516 * 10 9 7 12 12 C 1.50700 * 120.00298 * 4.96695 * 10 9 7 13 13 C 1.53004 * 109.47273 * 184.99605 * 12 10 9 14 14 C 1.50698 * 109.46920 * 179.97438 * 13 12 10 15 15 C 1.38363 * 119.85822 * 269.72621 * 14 13 12 16 16 C 1.37961 * 120.14683 * 179.72655 * 15 14 13 17 17 C 1.39572 * 119.85135 * 0.54679 * 16 15 14 18 18 C 1.47846 * 120.14537 * 179.70529 * 17 16 15 19 19 N 1.34773 * 119.99732 * 0.02562 * 18 17 16 20 20 O 1.21552 * 119.99969 * 180.02562 * 18 17 16 21 21 C 1.39583 * 119.71208 * 359.72924 * 17 16 15 22 22 C 1.37956 * 119.85497 * 359.97438 * 21 17 16 23 23 C 1.39420 * 119.99854 * 50.16179 * 9 7 2 24 24 C 1.39065 * 119.70271 * 5.00426 * 23 9 7 25 25 C 1.38375 * 119.10388 * 180.02562 * 24 23 9 26 26 C 1.38836 * 118.48958 * 359.97438 * 25 24 23 27 27 C 1.38145 * 119.31154 * 0.25742 * 26 25 24 28 28 N 1.31879 * 120.84835 * 359.46864 * 27 26 25 29 29 H 0.96996 * 119.99886 * 354.98616 * 1 2 3 30 30 H 1.09001 * 109.47471 * 304.99412 * 12 10 9 31 31 H 1.09003 * 109.46959 * 64.99492 * 12 10 9 32 32 H 1.08996 * 109.46883 * 299.99805 * 13 12 10 33 33 H 1.09003 * 109.47220 * 60.00047 * 13 12 10 34 34 H 1.07997 * 119.92513 * 0.02562 * 15 14 13 35 35 H 1.07998 * 120.07404 * 180.25051 * 16 15 14 36 36 H 0.97003 * 120.00112 * 359.97438 * 19 18 17 37 37 H 0.97005 * 120.00013 * 180.02562 * 19 18 17 38 38 H 1.07999 * 120.07059 * 179.97438 * 21 17 16 39 39 H 1.07993 * 119.92767 * 179.97438 * 22 21 17 40 40 H 1.08003 * 120.44665 * 0.04076 * 24 23 9 41 41 H 1.07996 * 120.76052 * 180.02562 * 25 24 23 42 42 H 1.08001 * 120.34064 * 179.97438 * 26 25 24 43 43 H 1.07995 * 119.57192 * 179.75152 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7082 1.3463 -0.0006 5 1 1.8893 2.3965 -1.2124 6 1 1.8894 2.3963 1.2125 7 6 2.0086 -1.2029 -0.0005 8 1 3.0819 -1.2069 0.1193 9 7 1.3309 -2.3862 -0.1534 10 6 1.5435 -3.4005 0.7082 11 8 1.0141 -4.4755 0.5218 12 6 2.4392 -3.1990 1.9032 13 6 2.6099 -4.5276 2.6426 14 6 3.5061 -4.3262 3.8372 15 6 4.8736 -4.4929 3.7083 16 6 5.7002 -4.3044 4.7967 17 6 5.1530 -3.9560 6.0325 18 6 6.0322 -3.7588 7.2047 19 7 7.3651 -3.9150 7.0812 20 8 5.5528 -3.4559 8.2799 21 6 3.7721 -3.7950 6.1571 22 6 2.9573 -3.9804 5.0594 23 6 0.4225 -2.5392 -1.1998 24 6 0.2843 -1.5290 -2.1455 25 6 -0.6214 -1.6935 -3.1787 26 6 -1.3603 -2.8678 -3.2309 27 6 -1.1750 -3.8274 -2.2546 28 7 -0.3004 -3.6451 -1.2845 29 1 -0.4850 0.8368 0.0734 30 1 3.4135 -2.8405 1.5708 31 1 1.9914 -2.4652 2.5733 32 1 1.6357 -4.8861 2.9751 33 1 3.0577 -5.2615 1.9725 34 1 5.2953 -4.7664 2.7525 35 1 6.7678 -4.4309 4.6938 36 1 7.7476 -4.1571 6.2232 37 1 7.9420 -3.7860 7.8503 38 1 3.3425 -3.5259 7.1107 39 1 1.8888 -3.8565 5.1546 40 1 0.8761 -0.6283 -2.0747 41 1 -0.7501 -0.9264 -3.9279 42 1 -2.0758 -3.0273 -4.0240 43 1 -1.7504 -4.7407 -2.2889 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001585099119.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:53 Heat of formation + Delta-G solvation = 0.528289 kcal Electronic energy + Delta-G solvation = -27972.546327 eV Core-core repulsion = 23982.968370 eV Total energy + Delta-G solvation = -3989.577958 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.24201 -39.74784 -38.57056 -37.80670 -35.16648 -34.22453 -33.43522 -32.13378 -31.03769 -30.96500 -30.00882 -28.83918 -25.44959 -25.12695 -22.87712 -22.71186 -22.18675 -21.49257 -20.31578 -19.21566 -18.36042 -17.90915 -17.03295 -16.44948 -15.70947 -15.33029 -15.21554 -15.12922 -14.96644 -14.89854 -14.68639 -14.32247 -14.12007 -13.66573 -13.55641 -13.32283 -13.10384 -13.00404 -12.56045 -12.14988 -12.06989 -11.80699 -11.52430 -11.40237 -11.31519 -11.15629 -11.03588 -10.80793 -10.51022 -10.44204 -10.22958 -9.96931 -9.41623 -9.06265 -9.04509 -8.92620 -8.73259 -8.68784 -7.91774 -7.02925 -6.47282 -4.55270 0.76357 1.32702 2.24486 2.44611 2.74182 2.97831 3.07842 3.10916 3.29232 3.74823 3.79627 3.92583 4.35160 4.61465 4.67046 4.68054 4.87553 5.00824 5.19612 5.30999 5.34932 5.51259 5.58231 5.66289 5.71782 5.75911 5.94523 5.98099 6.05873 6.17682 6.19713 6.28894 6.32902 6.36339 6.50163 6.51632 6.59196 6.70124 6.84216 6.85231 7.08291 7.10289 7.18063 7.26733 7.55687 7.92035 8.02862 8.19140 8.79805 8.88537 9.32749 9.76459 10.41481 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.014569 B = 0.002752 C = 0.002434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1921.454128 B =10170.914360 C =11502.640622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.844 5.844 2 C 0.052 3.948 3 Si 0.917 3.083 4 H -0.264 1.264 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.360 4.360 8 H 0.098 0.902 9 N -0.388 5.388 10 C 0.491 3.509 11 O -0.525 6.525 12 C -0.111 4.111 13 C -0.074 4.074 14 C -0.037 4.037 15 C -0.126 4.126 16 C -0.084 4.084 17 C -0.156 4.156 18 C 0.566 3.434 19 N -0.854 5.854 20 O -0.545 6.545 21 C -0.055 4.055 22 C -0.124 4.124 23 C 0.385 3.615 24 C -0.143 4.143 25 C -0.081 4.081 26 C -0.238 4.238 27 C 0.106 3.894 28 N -0.495 5.495 29 H 0.276 0.724 30 H 0.087 0.913 31 H 0.093 0.907 32 H 0.082 0.918 33 H 0.078 0.922 34 H 0.130 0.870 35 H 0.123 0.877 36 H 0.401 0.599 37 H 0.403 0.597 38 H 0.134 0.866 39 H 0.132 0.868 40 H 0.135 0.865 41 H 0.115 0.885 42 H 0.112 0.888 43 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.308 -4.185 4.471 11.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.476 5.476 2 C -0.158 4.158 3 Si 0.742 3.258 4 H -0.188 1.188 5 H -0.201 1.201 6 H -0.202 1.202 7 C -0.488 4.488 8 H 0.116 0.884 9 N -0.099 5.099 10 C 0.281 3.719 11 O -0.401 6.401 12 C -0.151 4.151 13 C -0.112 4.112 14 C -0.037 4.037 15 C -0.144 4.144 16 C -0.103 4.103 17 C -0.159 4.159 18 C 0.353 3.647 19 N -0.418 5.418 20 O -0.423 6.423 21 C -0.074 4.074 22 C -0.142 4.142 23 C 0.155 3.845 24 C -0.167 4.167 25 C -0.107 4.107 26 C -0.260 4.260 27 C -0.053 4.053 28 N -0.211 5.211 29 H 0.086 0.914 30 H 0.105 0.895 31 H 0.111 0.889 32 H 0.100 0.900 33 H 0.097 0.903 34 H 0.148 0.852 35 H 0.141 0.859 36 H 0.230 0.770 37 H 0.234 0.766 38 H 0.152 0.848 39 H 0.150 0.850 40 H 0.153 0.847 41 H 0.133 0.867 42 H 0.131 0.869 43 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 9.588 -5.057 5.678 12.237 hybrid contribution 0.564 1.823 -0.773 2.059 sum 10.152 -3.234 4.905 11.730 Atomic orbital electron populations 1.69969 1.06188 1.28649 1.42807 1.25615 0.95395 1.00237 0.94517 0.86005 0.80054 0.81254 0.78438 1.18759 1.20128 1.20168 1.19437 0.92204 0.81757 1.55371 0.88431 1.41191 1.35196 1.13202 1.20358 1.20870 0.82880 0.84379 0.83791 1.90659 1.49836 1.25551 1.74082 1.21358 1.00706 0.97152 0.95872 1.20532 0.99168 0.98019 0.93483 1.20336 0.94239 0.93947 0.95214 1.21048 0.93042 1.01462 0.98823 1.21197 0.99375 0.97654 0.92025 1.19775 0.94465 1.08209 0.93497 1.18363 0.82405 0.75710 0.88194 1.43763 1.07743 1.74199 1.16052 1.90803 1.75193 1.47726 1.28561 1.21249 0.91878 0.95037 0.99231 1.21158 1.00568 1.00447 0.92020 1.18821 0.89946 0.88856 0.86882 1.21510 1.01056 1.00177 0.93952 1.21150 0.95583 0.96547 0.97386 1.21637 1.04803 0.96970 1.02586 1.22258 0.94612 0.97977 0.90459 1.67589 1.07307 1.22233 1.23965 0.91381 0.89500 0.88872 0.89953 0.90315 0.85191 0.85922 0.76951 0.76640 0.84830 0.84997 0.84687 0.86739 0.86945 0.84540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -21.26 11.12 55.49 0.62 -20.65 16 2 C 0.05 1.21 3.59 -17.49 -0.06 1.15 16 3 Si 0.92 17.89 29.56 -169.99 -5.03 12.87 16 4 H -0.26 -4.97 7.11 56.52 0.40 -4.57 16 5 H -0.28 -5.39 7.11 56.52 0.40 -4.99 16 6 H -0.28 -5.46 7.11 56.52 0.40 -5.06 16 7 C -0.36 -8.46 7.67 -14.90 -0.11 -8.58 16 8 H 0.10 2.14 7.36 -52.49 -0.39 1.75 16 9 N -0.39 -9.60 2.68 -60.71 -0.16 -9.76 16 10 C 0.49 11.40 7.58 -10.99 -0.08 11.32 16 11 O -0.53 -13.31 14.28 5.57 0.08 -13.23 16 12 C -0.11 -1.99 4.60 -27.88 -0.13 -2.12 16 13 C -0.07 -1.12 4.64 -27.88 -0.13 -1.25 16 14 C -0.04 -0.48 5.14 -104.53 -0.54 -1.02 16 15 C -0.13 -1.40 9.68 -39.64 -0.38 -1.78 16 16 C -0.08 -0.82 9.54 -39.19 -0.37 -1.19 16 17 C -0.16 -1.83 5.87 -104.97 -0.62 -2.44 16 18 C 0.57 6.67 8.05 -12.33 -0.10 6.57 16 19 N -0.85 -6.12 8.82 30.53 0.27 -5.85 16 20 O -0.54 -8.50 17.18 5.32 0.09 -8.41 16 21 C -0.06 -0.69 9.60 -39.18 -0.38 -1.07 16 22 C -0.12 -1.57 9.68 -39.64 -0.38 -1.96 16 23 C 0.39 9.78 6.63 -154.64 -1.02 8.75 16 24 C -0.14 -3.33 7.61 -39.22 -0.30 -3.63 16 25 C -0.08 -1.62 10.17 -39.31 -0.40 -2.02 16 26 C -0.24 -4.52 10.11 -39.39 -0.40 -4.92 16 27 C 0.11 2.23 11.18 -17.57 -0.20 2.03 16 28 N -0.50 -12.43 7.92 -12.34 -0.10 -12.52 16 29 H 0.28 6.57 8.32 -40.82 -0.34 6.23 16 30 H 0.09 1.45 7.54 -51.93 -0.39 1.05 16 31 H 0.09 1.70 8.14 -51.93 -0.42 1.28 16 32 H 0.08 1.31 7.99 -51.93 -0.41 0.90 16 33 H 0.08 1.18 8.08 -51.93 -0.42 0.76 16 34 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 35 H 0.12 0.76 6.41 -52.49 -0.34 0.42 16 36 H 0.40 1.77 6.86 -40.82 -0.28 1.49 16 37 H 0.40 2.31 8.93 -40.82 -0.36 1.94 16 38 H 0.13 1.65 7.65 -52.49 -0.40 1.25 16 39 H 0.13 1.56 8.06 -52.49 -0.42 1.13 16 40 H 0.14 3.21 5.55 -52.48 -0.29 2.91 16 41 H 0.11 1.93 8.06 -52.49 -0.42 1.51 16 42 H 0.11 1.73 8.06 -52.49 -0.42 1.31 16 43 H 0.14 2.42 8.06 -52.49 -0.42 2.00 16 LS Contribution 367.32 15.07 5.54 5.54 Total: -1.00 -32.77 367.32 -9.26 -42.02 By element: Atomic # 1 Polarization: 17.11 SS G_CDS: -4.96 Total: 12.15 kcal Atomic # 6 Polarization: 3.45 SS G_CDS: -5.61 Total: -2.16 kcal Atomic # 7 Polarization: -49.40 SS G_CDS: 0.63 Total: -48.78 kcal Atomic # 8 Polarization: -21.81 SS G_CDS: 0.17 Total: -21.64 kcal Atomic # 14 Polarization: 17.89 SS G_CDS: -5.03 Total: 12.87 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -32.77 -9.26 -42.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001585099119.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.551 kcal (2) G-P(sol) polarization free energy of solvation -32.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.023 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds