Wall clock time and date at job start Sat Apr 11 2020 05:39:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86797 * 119.99966 * 2 1 4 4 H 1.48507 * 109.47014 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47270 * 300.00351 * 3 2 1 6 6 H 1.48498 * 109.47091 * 60.00464 * 3 2 1 7 7 C 1.38895 * 119.99989 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00521 * 187.36290 * 7 2 1 9 9 N 1.37221 * 119.99797 * 7.36272 * 7 2 1 10 10 C 1.34769 * 119.99759 * 230.16789 * 9 7 2 11 11 O 1.21267 * 120.00192 * 184.97516 * 10 9 7 12 12 C 1.50700 * 120.00298 * 4.96695 * 10 9 7 13 13 C 1.53004 * 109.47273 * 184.99605 * 12 10 9 14 14 C 1.50698 * 109.46920 * 179.97438 * 13 12 10 15 15 C 1.38363 * 119.85822 * 269.72621 * 14 13 12 16 16 C 1.37961 * 120.14683 * 179.72655 * 15 14 13 17 17 C 1.39572 * 119.85135 * 0.54679 * 16 15 14 18 18 C 1.47846 * 120.14537 * 179.70529 * 17 16 15 19 19 N 1.34773 * 119.99732 * 0.02562 * 18 17 16 20 20 O 1.21552 * 119.99969 * 180.02562 * 18 17 16 21 21 C 1.39583 * 119.71208 * 359.72924 * 17 16 15 22 22 C 1.37956 * 119.85497 * 359.97438 * 21 17 16 23 23 C 1.39420 * 119.99854 * 50.16179 * 9 7 2 24 24 C 1.39065 * 119.70271 * 5.00426 * 23 9 7 25 25 C 1.38375 * 119.10388 * 180.02562 * 24 23 9 26 26 C 1.38836 * 118.48958 * 359.97438 * 25 24 23 27 27 C 1.38145 * 119.31154 * 0.25742 * 26 25 24 28 28 N 1.31879 * 120.84835 * 359.46864 * 27 26 25 29 29 H 0.96996 * 119.99886 * 354.98616 * 1 2 3 30 30 H 1.09001 * 109.47471 * 304.99412 * 12 10 9 31 31 H 1.09003 * 109.46959 * 64.99492 * 12 10 9 32 32 H 1.08996 * 109.46883 * 299.99805 * 13 12 10 33 33 H 1.09003 * 109.47220 * 60.00047 * 13 12 10 34 34 H 1.07997 * 119.92513 * 0.02562 * 15 14 13 35 35 H 1.07998 * 120.07404 * 180.25051 * 16 15 14 36 36 H 0.97003 * 120.00112 * 359.97438 * 19 18 17 37 37 H 0.97005 * 120.00013 * 180.02562 * 19 18 17 38 38 H 1.07999 * 120.07059 * 179.97438 * 21 17 16 39 39 H 1.07993 * 119.92767 * 179.97438 * 22 21 17 40 40 H 1.08003 * 120.44665 * 0.04076 * 24 23 9 41 41 H 1.07996 * 120.76052 * 180.02562 * 25 24 23 42 42 H 1.08001 * 120.34064 * 179.97438 * 26 25 24 43 43 H 1.07995 * 119.57192 * 179.75152 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7082 1.3463 -0.0006 5 1 1.8893 2.3965 -1.2124 6 1 1.8894 2.3963 1.2125 7 6 2.0086 -1.2029 -0.0005 8 1 3.0819 -1.2069 0.1193 9 7 1.3309 -2.3862 -0.1534 10 6 1.5435 -3.4005 0.7082 11 8 1.0141 -4.4755 0.5218 12 6 2.4392 -3.1990 1.9032 13 6 2.6099 -4.5276 2.6426 14 6 3.5061 -4.3262 3.8372 15 6 4.8736 -4.4929 3.7083 16 6 5.7002 -4.3044 4.7967 17 6 5.1530 -3.9560 6.0325 18 6 6.0322 -3.7588 7.2047 19 7 7.3651 -3.9150 7.0812 20 8 5.5528 -3.4559 8.2799 21 6 3.7721 -3.7950 6.1571 22 6 2.9573 -3.9804 5.0594 23 6 0.4225 -2.5392 -1.1998 24 6 0.2843 -1.5290 -2.1455 25 6 -0.6214 -1.6935 -3.1787 26 6 -1.3603 -2.8678 -3.2309 27 6 -1.1750 -3.8274 -2.2546 28 7 -0.3004 -3.6451 -1.2845 29 1 -0.4850 0.8368 0.0734 30 1 3.4135 -2.8405 1.5708 31 1 1.9914 -2.4652 2.5733 32 1 1.6357 -4.8861 2.9751 33 1 3.0577 -5.2615 1.9725 34 1 5.2953 -4.7664 2.7525 35 1 6.7678 -4.4309 4.6938 36 1 7.7476 -4.1571 6.2232 37 1 7.9420 -3.7860 7.8503 38 1 3.3425 -3.5259 7.1107 39 1 1.8888 -3.8565 5.1546 40 1 0.8761 -0.6283 -2.0747 41 1 -0.7501 -0.9264 -3.9279 42 1 -2.0758 -3.0273 -4.0240 43 1 -1.7504 -4.7407 -2.2889 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001585099119.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:53 Heat of formation + Delta-G solvation = -19.747987 kcal Electronic energy + Delta-G solvation = -27973.425573 eV Core-core repulsion = 23982.968370 eV Total energy + Delta-G solvation = -3990.457203 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.51839 -41.10611 -39.81204 -39.22926 -36.91943 -35.22219 -34.48946 -33.90296 -32.74077 -31.86086 -31.40430 -30.25665 -27.15981 -26.46423 -24.29416 -23.74264 -23.60820 -22.85236 -21.29104 -20.92078 -19.59976 -19.15372 -18.06791 -17.86733 -17.42808 -16.82331 -16.51909 -16.34541 -16.22096 -16.03267 -15.83262 -15.72416 -15.57617 -15.19308 -14.74397 -14.64043 -14.44538 -14.18896 -13.83655 -13.71692 -13.63011 -13.37424 -13.12976 -12.89223 -12.63222 -12.38660 -12.37309 -12.19852 -12.00225 -11.74248 -11.20109 -11.15042 -10.79855 -10.73851 -10.66178 -10.40638 -9.94126 -9.79253 -9.60378 -8.79335 -8.22958 -6.38025 -0.17554 0.42996 0.56606 0.77562 1.43018 1.48136 1.60409 1.81486 2.06436 2.26317 2.54181 2.69349 2.89405 2.95091 3.47290 3.68441 3.82145 3.90702 4.00618 4.06619 4.21656 4.22775 4.28217 4.43574 4.45792 4.55553 4.57400 4.68426 4.73963 4.85897 4.89002 4.97723 5.12367 5.18415 5.25743 5.28638 5.38327 5.39234 5.45177 5.61222 5.66946 5.85206 5.91754 5.93664 6.16779 6.41211 6.42608 7.01242 7.17517 7.28080 7.56180 8.01663 8.66310 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.014569 B = 0.002752 C = 0.002434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1921.454128 B =10170.914360 C =11502.640622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.018 3.982 3 Si 0.983 3.017 4 H -0.249 1.249 5 H -0.275 1.275 6 H -0.280 1.280 7 C -0.370 4.370 8 H 0.110 0.890 9 N -0.403 5.403 10 C 0.475 3.525 11 O -0.558 6.558 12 C -0.097 4.097 13 C -0.060 4.060 14 C -0.049 4.049 15 C -0.125 4.125 16 C -0.069 4.069 17 C -0.162 4.162 18 C 0.564 3.436 19 N -0.828 5.828 20 O -0.592 6.592 21 C -0.070 4.070 22 C -0.133 4.133 23 C 0.349 3.651 24 C -0.162 4.162 25 C -0.079 4.079 26 C -0.220 4.220 27 C 0.088 3.912 28 N -0.534 5.534 29 H 0.274 0.726 30 H 0.102 0.898 31 H 0.085 0.915 32 H 0.065 0.935 33 H 0.079 0.921 34 H 0.151 0.849 35 H 0.167 0.833 36 H 0.418 0.582 37 H 0.413 0.587 38 H 0.127 0.873 39 H 0.129 0.871 40 H 0.124 0.876 41 H 0.150 0.850 42 H 0.159 0.841 43 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.304 -3.825 3.277 13.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.188 4.188 3 Si 0.806 3.194 4 H -0.172 1.172 5 H -0.201 1.201 6 H -0.206 1.206 7 C -0.496 4.496 8 H 0.127 0.873 9 N -0.116 5.116 10 C 0.266 3.734 11 O -0.437 6.437 12 C -0.136 4.136 13 C -0.098 4.098 14 C -0.050 4.050 15 C -0.143 4.143 16 C -0.087 4.087 17 C -0.165 4.165 18 C 0.350 3.650 19 N -0.392 5.392 20 O -0.474 6.474 21 C -0.089 4.089 22 C -0.151 4.151 23 C 0.120 3.880 24 C -0.186 4.186 25 C -0.105 4.105 26 C -0.241 4.241 27 C -0.070 4.070 28 N -0.250 5.250 29 H 0.084 0.916 30 H 0.120 0.880 31 H 0.104 0.896 32 H 0.083 0.917 33 H 0.098 0.902 34 H 0.169 0.831 35 H 0.184 0.816 36 H 0.250 0.750 37 H 0.245 0.755 38 H 0.145 0.855 39 H 0.147 0.853 40 H 0.142 0.858 41 H 0.168 0.832 42 H 0.177 0.823 43 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 11.642 -4.712 4.451 13.325 hybrid contribution -0.101 1.637 -0.500 1.714 sum 11.540 -3.075 3.951 12.580 Atomic orbital electron populations 1.70109 1.07894 1.29216 1.44281 1.26364 0.95837 1.03060 0.93572 0.85013 0.79502 0.76974 0.77936 1.17238 1.20070 1.20583 1.19800 0.92785 0.81850 1.55209 0.87288 1.41532 1.35397 1.13817 1.20805 1.21756 0.83175 0.83805 0.84661 1.90609 1.51366 1.26607 1.75074 1.21294 1.00019 0.98595 0.93740 1.20329 0.99020 0.96357 0.94099 1.20173 0.94993 0.95663 0.94128 1.21310 0.92143 1.00592 1.00211 1.21565 1.01375 0.95408 0.90350 1.19945 0.94100 1.08014 0.94466 1.18426 0.83657 0.75455 0.87418 1.43552 1.06197 1.72070 1.17401 1.90787 1.76270 1.50206 1.30114 1.21278 0.92805 0.95881 0.98893 1.21164 1.00678 1.00959 0.92279 1.19205 0.91015 0.89795 0.88005 1.21546 1.02437 0.99539 0.95091 1.21616 0.94182 0.97792 0.96919 1.22078 1.04168 0.95401 1.02479 1.22895 0.94142 0.99719 0.90224 1.67557 1.08661 1.22865 1.25941 0.91605 0.87956 0.89638 0.91651 0.90195 0.83149 0.81582 0.74970 0.75458 0.85510 0.85292 0.85825 0.83227 0.82325 0.81782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -45.39 11.12 21.65 0.24 -45.15 16 2 C 0.02 0.82 3.59 84.91 0.31 1.13 16 3 Si 0.98 36.46 29.56 68.60 2.03 38.49 16 4 H -0.25 -8.56 7.11 99.48 0.71 -7.86 16 5 H -0.28 -10.10 7.11 99.48 0.71 -9.40 16 6 H -0.28 -10.50 7.11 99.48 0.71 -9.79 16 7 C -0.37 -17.61 7.67 84.01 0.64 -16.97 16 8 H 0.11 4.76 7.36 -2.91 -0.02 4.74 16 9 N -0.40 -20.61 2.68 -464.39 -1.24 -21.85 16 10 C 0.47 22.90 7.58 87.66 0.66 23.57 16 11 O -0.56 -29.55 14.28 -2.99 -0.04 -29.60 16 12 C -0.10 -3.55 4.60 29.85 0.14 -3.42 16 13 C -0.06 -1.86 4.64 29.85 0.14 -1.72 16 14 C -0.05 -1.26 5.14 -19.80 -0.10 -1.36 16 15 C -0.12 -2.48 9.68 22.23 0.22 -2.27 16 16 C -0.07 -1.13 9.54 22.53 0.21 -0.91 16 17 C -0.16 -3.55 5.87 -20.09 -0.12 -3.67 16 18 C 0.56 12.42 8.05 86.79 0.70 13.12 16 19 N -0.83 -9.43 8.82 -175.61 -1.55 -10.98 16 20 O -0.59 -18.42 17.18 -3.88 -0.07 -18.48 16 21 C -0.07 -1.77 9.60 22.53 0.22 -1.55 16 22 C -0.13 -3.45 9.68 22.23 0.22 -3.24 16 23 C 0.35 18.18 6.63 132.91 0.88 19.06 16 24 C -0.16 -7.63 7.61 22.50 0.17 -7.45 16 25 C -0.08 -3.04 10.17 22.45 0.23 -2.82 16 26 C -0.22 -7.79 10.11 22.39 0.23 -7.57 16 27 C 0.09 3.65 11.18 84.66 0.95 4.60 16 28 N -0.53 -27.36 7.92 -192.96 -1.53 -28.89 16 29 H 0.27 13.37 8.32 -92.71 -0.77 12.60 16 30 H 0.10 3.38 7.54 -2.39 -0.02 3.36 16 31 H 0.09 3.25 8.14 -2.39 -0.02 3.23 16 32 H 0.06 2.21 7.99 -2.39 -0.02 2.19 16 33 H 0.08 2.42 8.08 -2.39 -0.02 2.40 16 34 H 0.15 2.39 8.06 -2.91 -0.02 2.36 16 35 H 0.17 1.20 6.41 -2.91 -0.02 1.18 16 36 H 0.42 1.95 6.86 -92.71 -0.64 1.31 16 37 H 0.41 3.61 8.93 -92.70 -0.83 2.78 16 38 H 0.13 3.31 7.65 -2.91 -0.02 3.29 16 39 H 0.13 3.28 8.06 -2.91 -0.02 3.26 16 40 H 0.12 5.97 5.55 -2.91 -0.02 5.95 16 41 H 0.15 4.59 8.06 -2.91 -0.02 4.57 16 42 H 0.16 4.13 8.06 -2.91 -0.02 4.11 16 43 H 0.17 5.59 8.06 -2.91 -0.02 5.57 16 Total: -1.00 -75.22 367.32 3.13 -72.08 By element: Atomic # 1 Polarization: 36.24 SS G_CDS: -0.39 Total: 35.85 kcal Atomic # 6 Polarization: 2.85 SS G_CDS: 5.68 Total: 8.53 kcal Atomic # 7 Polarization: -102.79 SS G_CDS: -4.08 Total: -106.88 kcal Atomic # 8 Polarization: -47.97 SS G_CDS: -0.11 Total: -48.08 kcal Atomic # 14 Polarization: 36.46 SS G_CDS: 2.03 Total: 38.49 kcal Total: -75.22 3.13 -72.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001585099119.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.337 kcal (2) G-P(sol) polarization free energy of solvation -75.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds