Wall clock time and date at job start Sat Apr 11 2020 05:39:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38418 * 119.84212 * 2 1 4 4 C 1.37900 * 120.15844 * 180.02562 * 3 2 1 5 5 C 1.39737 * 119.83777 * 0.02562 * 4 3 2 6 6 C 1.47739 * 120.15257 * 179.97438 * 5 4 3 7 7 O 1.21548 * 119.99954 * 359.97438 * 6 5 4 8 8 C 1.47427 * 119.99631 * 180.02562 * 6 5 4 9 9 C 1.34436 * 120.00171 * 180.02562 * 8 6 5 10 10 C 1.47524 * 120.00399 * 179.97438 * 9 8 6 11 11 O 1.21569 * 119.99936 * 0.02562 * 10 9 8 12 12 N 1.34772 * 120.00152 * 179.97438 * 10 9 8 13 13 C 1.39976 * 120.00169 * 179.97438 * 12 10 9 14 14 C 1.40445 * 125.97901 * 359.97438 * 13 12 10 15 15 C 1.35218 * 107.86847 * 179.73433 * 14 13 12 16 16 N 1.34986 * 107.87365 * 0.42117 * 15 14 13 17 17 C 1.46495 * 125.97626 * 179.83947 * 16 15 14 18 18 C 1.50702 * 109.47571 * 124.71621 * 17 16 15 19 19 H 1.08002 * 119.99446 * 359.97438 * 18 17 16 20 20 C 1.37871 * 120.00072 * 180.02562 * 18 17 16 21 21 N 1.31516 * 119.99826 * 179.72119 * 20 18 17 22 22 Si 1.86800 * 120.00406 * 359.97438 * 20 18 17 23 23 H 1.48501 * 109.46758 * 269.72576 * 22 20 18 24 24 H 1.48499 * 109.47026 * 29.72423 * 22 20 18 25 25 H 1.48496 * 109.47474 * 149.72459 * 22 20 18 26 26 N 1.31268 * 125.97956 * 179.97438 * 13 12 10 27 27 C 1.39724 * 119.68840 * 0.25361 * 5 4 3 28 28 C 1.37901 * 119.83998 * 359.46819 * 27 5 4 29 29 H 1.09000 * 109.47569 * 89.99405 * 1 2 3 30 30 H 1.09001 * 109.47242 * 210.00226 * 1 2 3 31 31 H 1.09001 * 109.47208 * 329.99954 * 1 2 3 32 32 H 1.07997 * 119.91949 * 359.97438 * 3 2 1 33 33 H 1.08000 * 120.07916 * 179.97438 * 4 3 2 34 34 H 1.08001 * 120.00566 * 359.97438 * 8 6 5 35 35 H 1.08001 * 119.99263 * 359.97438 * 9 8 6 36 36 H 0.97008 * 120.00076 * 0.02562 * 12 10 9 37 37 H 1.08000 * 126.06664 * 359.97438 * 14 13 12 38 38 H 1.07997 * 126.06964 * 180.25447 * 15 14 13 39 39 H 1.09000 * 109.47378 * 4.71280 * 17 16 15 40 40 H 1.09001 * 109.47153 * 244.71401 * 17 16 15 41 41 H 0.96999 * 120.00128 * 180.27192 * 21 20 18 42 42 H 1.08000 * 120.08068 * 179.72636 * 27 5 4 43 43 H 1.08006 * 119.92177 * 180.28082 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1957 1.2006 0.0000 4 6 3.5747 1.2083 -0.0005 5 6 4.2767 0.0000 -0.0016 6 6 5.7540 0.0000 -0.0028 7 8 6.3618 1.0527 -0.0032 8 6 6.4911 -1.2768 -0.0045 9 6 7.8355 -1.2769 -0.0050 10 6 8.5731 -2.5545 -0.0061 11 8 7.9653 -3.6073 -0.0071 12 7 9.9208 -2.5545 -0.0072 13 6 10.6207 -3.7667 -0.0077 14 6 10.0490 -5.0495 -0.0068 15 6 11.0556 -5.9524 -0.0137 16 7 12.2218 -5.2727 -0.0094 17 6 13.5623 -5.8635 -0.0110 18 6 14.3495 -5.3203 -1.1756 19 1 13.8964 -4.6066 -1.8476 20 6 15.6478 -5.7352 -1.3837 21 7 16.3329 -5.2653 -2.4032 22 14 16.4313 -6.9702 -0.2217 23 1 17.1086 -6.2479 0.8850 24 1 15.3813 -7.8594 0.3370 25 1 17.4269 -7.7851 -0.9632 26 7 11.9263 -3.9035 -0.0092 27 6 3.5747 -1.2081 -0.0075 28 6 2.1958 -1.2005 -0.0011 29 1 -0.3634 0.0001 -1.0276 30 1 -0.3634 -0.8900 0.5139 31 1 -0.3634 0.8900 0.5138 32 1 1.6519 2.1337 -0.0004 33 1 4.1108 2.1458 -0.0010 34 1 5.9512 -2.2121 -0.0045 35 1 8.3754 -0.3415 -0.0046 36 1 10.4059 -1.7144 -0.0068 37 1 8.9928 -5.2749 -0.0051 38 1 10.9461 -7.0268 -0.0188 39 1 13.4818 -6.9469 -0.1006 40 1 14.0710 -5.6128 0.9199 41 1 17.2449 -5.5602 -2.5519 42 1 4.1108 -2.1457 -0.0129 43 1 1.6518 -2.1337 -0.0011 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001586593034.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:56 Heat of formation + Delta-G solvation = 60.617875 kcal Electronic energy + Delta-G solvation = -26154.766151 eV Core-core repulsion = 22167.793873 eV Total energy + Delta-G solvation = -3986.972278 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.88174 -40.48389 -39.44304 -38.75404 -34.97844 -33.72042 -33.37305 -33.07286 -31.49526 -31.24770 -29.48905 -28.46934 -27.32294 -25.48642 -23.15797 -23.11770 -22.31418 -21.35664 -20.35920 -19.78555 -19.24756 -18.11698 -17.12829 -16.78757 -16.67007 -16.07482 -15.68715 -15.46082 -15.33551 -14.97102 -14.91684 -14.54669 -14.37984 -14.19201 -14.12647 -13.92370 -13.63981 -13.11800 -12.74651 -12.60060 -12.55680 -12.42469 -12.40846 -12.14635 -12.12137 -11.44929 -11.22771 -10.92159 -10.58925 -10.36359 -10.21077 -10.19589 -10.03924 -9.81881 -9.56306 -9.46266 -9.19403 -8.78800 -8.26861 -7.61067 -6.25432 -4.28233 -0.12649 0.72886 0.92288 2.22184 2.54537 2.62019 2.96814 3.14712 3.19522 3.22508 3.39559 3.44861 3.66669 3.82980 4.20920 4.25950 4.31765 4.47232 4.50213 4.69839 4.72853 4.86406 4.93570 5.02223 5.06882 5.16864 5.23149 5.35868 5.47669 5.52911 5.58445 5.62718 5.76145 5.83694 5.96029 6.04969 6.08669 6.32961 6.38514 6.41944 6.48270 6.59949 7.06106 7.20740 7.24406 7.46382 7.75486 8.04089 8.30278 8.48589 8.83836 9.29156 10.87202 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.034755 B = 0.001557 C = 0.001512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.451571 B =17983.993548 C =18518.856236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.054 4.054 3 C -0.136 4.136 4 C -0.056 4.056 5 C -0.169 4.169 6 C 0.424 3.576 7 O -0.445 6.445 8 C -0.151 4.151 9 C -0.107 4.107 10 C 0.545 3.455 11 O -0.511 6.511 12 N -0.619 5.619 13 C 0.257 3.743 14 C -0.282 4.282 15 C 0.053 3.947 16 N -0.317 5.317 17 C 0.231 3.769 18 C -0.536 4.536 19 H 0.086 0.914 20 C 0.077 3.923 21 N -0.887 5.887 22 Si 0.875 3.125 23 H -0.271 1.271 24 H -0.265 1.265 25 H -0.280 1.280 26 N -0.293 5.293 27 C -0.065 4.065 28 C -0.134 4.134 29 H 0.076 0.924 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.129 0.871 33 H 0.135 0.865 34 H 0.150 0.850 35 H 0.146 0.854 36 H 0.416 0.584 37 H 0.162 0.838 38 H 0.170 0.830 39 H 0.054 0.946 40 H 0.038 0.962 41 H 0.268 0.732 42 H 0.137 0.863 43 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.373 9.278 6.530 32.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.054 4.054 3 C -0.154 4.154 4 C -0.074 4.074 5 C -0.170 4.170 6 C 0.304 3.696 7 O -0.322 6.322 8 C -0.171 4.171 9 C -0.128 4.128 10 C 0.332 3.668 11 O -0.386 6.386 12 N -0.266 5.266 13 C 0.003 3.997 14 C -0.314 4.314 15 C -0.097 4.097 16 N -0.098 5.098 17 C 0.113 3.887 18 C -0.575 4.575 19 H 0.104 0.896 20 C -0.127 4.127 21 N -0.524 5.524 22 Si 0.701 3.299 23 H -0.197 1.197 24 H -0.190 1.190 25 H -0.206 1.206 26 N -0.124 5.124 27 C -0.083 4.083 28 C -0.152 4.152 29 H 0.094 0.906 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.147 0.853 33 H 0.153 0.847 34 H 0.168 0.832 35 H 0.164 0.836 36 H 0.252 0.748 37 H 0.180 0.820 38 H 0.187 0.813 39 H 0.072 0.928 40 H 0.056 0.944 41 H 0.079 0.921 42 H 0.155 0.845 43 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -29.048 9.617 6.431 31.267 hybrid contribution 0.185 -0.696 0.411 0.829 sum -28.863 8.921 6.842 30.975 Atomic orbital electron populations 1.20900 0.90776 1.03271 1.02829 1.20266 0.96486 0.93214 0.95460 1.21052 0.93909 0.97927 1.02496 1.21384 0.94077 0.97782 0.94135 1.20317 0.94064 0.94567 1.08047 1.20667 0.88375 0.88356 0.72230 1.90622 1.71159 1.34356 1.36055 1.23791 0.95132 0.99730 0.98445 1.23407 0.95480 0.97874 0.96051 1.18440 0.81321 0.89612 0.77411 1.90732 1.67852 1.32371 1.47643 1.42274 1.05699 1.07224 1.71353 1.19061 0.90663 0.86311 1.03664 1.21545 1.00878 0.89384 1.19550 1.22569 0.85614 0.99102 1.02395 1.48657 1.07056 1.01842 1.52293 1.20079 0.75803 0.93518 0.99345 1.21105 0.97860 1.27822 1.10665 0.89637 1.24830 0.96535 0.96047 0.95294 1.69872 1.10840 1.43212 1.28463 0.86887 0.80035 0.81693 0.81314 1.19689 1.18963 1.20555 1.77432 1.11049 0.96645 1.27277 1.21552 0.94407 0.97575 0.94759 1.21078 0.94027 0.97954 1.02165 0.90568 0.91064 0.91165 0.85336 0.84742 0.83205 0.83625 0.74823 0.82016 0.81265 0.92814 0.94385 0.92142 0.84499 0.85161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.43 10.00 36.00 0.36 -0.07 16 2 C -0.05 -0.32 5.89 -104.49 -0.62 -0.94 16 3 C -0.14 -0.87 9.68 -39.64 -0.38 -1.25 16 4 C -0.06 -0.44 9.60 -39.15 -0.38 -0.82 16 5 C -0.17 -1.44 5.88 -104.90 -0.62 -2.06 16 6 C 0.42 4.15 7.10 -31.96 -0.23 3.93 16 7 O -0.45 -5.39 16.25 5.32 0.09 -5.31 16 8 C -0.15 -1.40 9.07 -37.18 -0.34 -1.74 16 9 C -0.11 -1.09 9.60 -37.14 -0.36 -1.45 16 10 C 0.55 7.43 7.75 -12.48 -0.10 7.34 16 11 O -0.51 -8.17 13.37 5.30 0.07 -8.10 16 12 N -0.62 -9.27 5.44 -12.10 -0.07 -9.33 16 13 C 0.26 4.98 8.10 -154.52 -1.25 3.73 16 14 C -0.28 -5.31 9.60 -39.83 -0.38 -5.69 16 15 C 0.05 0.99 11.43 -17.24 -0.20 0.79 16 16 N -0.32 -7.05 3.67 -62.57 -0.23 -7.28 16 17 C 0.23 5.42 5.33 -5.20 -0.03 5.39 16 18 C -0.54 -15.04 9.79 -34.44 -0.34 -15.38 16 19 H 0.09 2.72 8.06 -52.49 -0.42 2.30 16 20 C 0.08 2.14 5.47 -17.82 -0.10 2.05 16 21 N -0.89 -26.46 13.96 55.43 0.77 -25.68 16 22 Si 0.87 20.00 27.47 -169.99 -4.67 15.33 16 23 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 24 H -0.26 -5.61 6.54 56.52 0.37 -5.24 16 25 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 26 N -0.29 -6.62 12.42 31.42 0.39 -6.23 16 27 C -0.06 -0.45 9.46 -39.15 -0.37 -0.83 16 28 C -0.13 -0.82 9.68 -39.64 -0.38 -1.20 16 29 H 0.08 0.23 8.14 -51.93 -0.42 -0.20 16 30 H 0.07 0.20 8.08 -51.93 -0.42 -0.22 16 31 H 0.07 0.20 8.08 -51.93 -0.42 -0.22 16 32 H 0.13 0.56 8.06 -52.49 -0.42 0.13 16 33 H 0.13 1.02 7.65 -52.49 -0.40 0.62 16 34 H 0.15 1.24 5.82 -52.49 -0.31 0.93 16 35 H 0.15 1.26 7.53 -52.49 -0.40 0.86 16 36 H 0.42 5.08 8.81 -40.82 -0.36 4.72 16 37 H 0.16 2.89 5.91 -52.49 -0.31 2.58 16 38 H 0.17 2.49 8.06 -52.49 -0.42 2.07 16 39 H 0.05 1.15 7.12 -51.93 -0.37 0.78 16 40 H 0.04 0.87 7.57 -51.93 -0.39 0.48 16 41 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 42 H 0.14 0.75 6.23 -52.49 -0.33 0.43 16 43 H 0.13 0.54 8.06 -52.48 -0.42 0.12 16 LS Contribution 378.25 15.07 5.70 5.70 Total: -1.00 -34.96 378.25 -8.62 -43.59 By element: Atomic # 1 Polarization: 10.49 SS G_CDS: -4.98 Total: 5.51 kcal Atomic # 6 Polarization: -2.49 SS G_CDS: -5.70 Total: -8.19 kcal Atomic # 7 Polarization: -49.40 SS G_CDS: 0.87 Total: -48.53 kcal Atomic # 8 Polarization: -13.56 SS G_CDS: 0.16 Total: -13.40 kcal Atomic # 14 Polarization: 20.00 SS G_CDS: -4.67 Total: 15.33 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -34.96 -8.62 -43.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001586593034.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.203 kcal (2) G-P(sol) polarization free energy of solvation -34.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.585 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds