Wall clock time and date at job start Sat Apr 11 2020 05:39:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38418 * 119.84212 * 2 1 4 4 C 1.37900 * 120.15844 * 180.02562 * 3 2 1 5 5 C 1.39737 * 119.83777 * 0.02562 * 4 3 2 6 6 C 1.47739 * 120.15257 * 179.97438 * 5 4 3 7 7 O 1.21548 * 119.99954 * 359.97438 * 6 5 4 8 8 C 1.47427 * 119.99631 * 180.02562 * 6 5 4 9 9 C 1.34436 * 120.00171 * 180.02562 * 8 6 5 10 10 C 1.47524 * 120.00399 * 179.97438 * 9 8 6 11 11 O 1.21569 * 119.99936 * 0.02562 * 10 9 8 12 12 N 1.34772 * 120.00152 * 179.97438 * 10 9 8 13 13 C 1.39976 * 120.00169 * 179.97438 * 12 10 9 14 14 C 1.40445 * 125.97901 * 359.97438 * 13 12 10 15 15 C 1.35218 * 107.86847 * 179.73433 * 14 13 12 16 16 N 1.34986 * 107.87365 * 0.42117 * 15 14 13 17 17 C 1.46495 * 125.97626 * 179.83947 * 16 15 14 18 18 C 1.50702 * 109.47571 * 124.71621 * 17 16 15 19 19 H 1.08002 * 119.99446 * 359.97438 * 18 17 16 20 20 C 1.37871 * 120.00072 * 180.02562 * 18 17 16 21 21 N 1.31516 * 119.99826 * 179.72119 * 20 18 17 22 22 Si 1.86800 * 120.00406 * 359.97438 * 20 18 17 23 23 H 1.48501 * 109.46758 * 269.72576 * 22 20 18 24 24 H 1.48499 * 109.47026 * 29.72423 * 22 20 18 25 25 H 1.48496 * 109.47474 * 149.72459 * 22 20 18 26 26 N 1.31268 * 125.97956 * 179.97438 * 13 12 10 27 27 C 1.39724 * 119.68840 * 0.25361 * 5 4 3 28 28 C 1.37901 * 119.83998 * 359.46819 * 27 5 4 29 29 H 1.09000 * 109.47569 * 89.99405 * 1 2 3 30 30 H 1.09001 * 109.47242 * 210.00226 * 1 2 3 31 31 H 1.09001 * 109.47208 * 329.99954 * 1 2 3 32 32 H 1.07997 * 119.91949 * 359.97438 * 3 2 1 33 33 H 1.08000 * 120.07916 * 179.97438 * 4 3 2 34 34 H 1.08001 * 120.00566 * 359.97438 * 8 6 5 35 35 H 1.08001 * 119.99263 * 359.97438 * 9 8 6 36 36 H 0.97008 * 120.00076 * 0.02562 * 12 10 9 37 37 H 1.08000 * 126.06664 * 359.97438 * 14 13 12 38 38 H 1.07997 * 126.06964 * 180.25447 * 15 14 13 39 39 H 1.09000 * 109.47378 * 4.71280 * 17 16 15 40 40 H 1.09001 * 109.47153 * 244.71401 * 17 16 15 41 41 H 0.96999 * 120.00128 * 180.27192 * 21 20 18 42 42 H 1.08000 * 120.08068 * 179.72636 * 27 5 4 43 43 H 1.08006 * 119.92177 * 180.28082 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1957 1.2006 0.0000 4 6 3.5747 1.2083 -0.0005 5 6 4.2767 0.0000 -0.0016 6 6 5.7540 0.0000 -0.0028 7 8 6.3618 1.0527 -0.0032 8 6 6.4911 -1.2768 -0.0045 9 6 7.8355 -1.2769 -0.0050 10 6 8.5731 -2.5545 -0.0061 11 8 7.9653 -3.6073 -0.0071 12 7 9.9208 -2.5545 -0.0072 13 6 10.6207 -3.7667 -0.0077 14 6 10.0490 -5.0495 -0.0068 15 6 11.0556 -5.9524 -0.0137 16 7 12.2218 -5.2727 -0.0094 17 6 13.5623 -5.8635 -0.0110 18 6 14.3495 -5.3203 -1.1756 19 1 13.8964 -4.6066 -1.8476 20 6 15.6478 -5.7352 -1.3837 21 7 16.3329 -5.2653 -2.4032 22 14 16.4313 -6.9702 -0.2217 23 1 17.1086 -6.2479 0.8850 24 1 15.3813 -7.8594 0.3370 25 1 17.4269 -7.7851 -0.9632 26 7 11.9263 -3.9035 -0.0092 27 6 3.5747 -1.2081 -0.0075 28 6 2.1958 -1.2005 -0.0011 29 1 -0.3634 0.0001 -1.0276 30 1 -0.3634 -0.8900 0.5139 31 1 -0.3634 0.8900 0.5138 32 1 1.6519 2.1337 -0.0004 33 1 4.1108 2.1458 -0.0010 34 1 5.9512 -2.2121 -0.0045 35 1 8.3754 -0.3415 -0.0046 36 1 10.4059 -1.7144 -0.0068 37 1 8.9928 -5.2749 -0.0051 38 1 10.9461 -7.0268 -0.0188 39 1 13.4818 -6.9469 -0.1006 40 1 14.0710 -5.6128 0.9199 41 1 17.2449 -5.5602 -2.5519 42 1 4.1108 -2.1457 -0.0129 43 1 1.6518 -2.1337 -0.0011 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001586593034.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:55 Heat of formation + Delta-G solvation = 39.172414 kcal Electronic energy + Delta-G solvation = -26155.696096 eV Core-core repulsion = 22167.793873 eV Total energy + Delta-G solvation = -3987.902223 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.29245 -41.25545 -40.60017 -39.43236 -36.36722 -35.23286 -34.47811 -33.76770 -33.05447 -31.94898 -31.02656 -29.32717 -28.74436 -26.44168 -24.56108 -23.64024 -23.50705 -22.43834 -21.66740 -21.03919 -20.11159 -19.13156 -18.97674 -18.23455 -17.57480 -17.19869 -16.68043 -16.62701 -16.18769 -16.14021 -15.78903 -15.70217 -15.42482 -15.23075 -14.84964 -14.77697 -14.52556 -14.47452 -14.41456 -13.89127 -13.81617 -13.34137 -13.01747 -12.99211 -12.85854 -12.66813 -12.58842 -12.21158 -11.92058 -11.82801 -11.71090 -11.50406 -11.22115 -11.07711 -10.98203 -10.87997 -9.96888 -9.80705 -9.70348 -9.15004 -8.37838 -6.48598 -0.89609 0.03552 0.42007 1.01842 1.24962 1.37949 1.39896 1.47443 1.49592 1.87551 2.21564 2.28792 2.34248 2.83693 2.84659 2.95013 3.50815 3.79085 3.84648 3.94523 3.96338 4.07481 4.11920 4.19807 4.36572 4.43774 4.58347 4.64001 4.74833 4.77878 4.81680 4.85514 4.87195 4.88201 4.95988 5.10123 5.15994 5.24015 5.24150 5.33227 5.40291 5.59614 5.82721 5.94761 5.99013 6.13231 6.31161 6.39450 6.57318 6.84816 7.00288 7.14585 8.79221 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.034755 B = 0.001557 C = 0.001512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.451571 B =17983.993548 C =18518.856236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.053 4.053 3 C -0.142 4.142 4 C -0.069 4.069 5 C -0.191 4.191 6 C 0.428 3.572 7 O -0.474 6.474 8 C -0.132 4.132 9 C -0.112 4.112 10 C 0.551 3.449 11 O -0.533 6.533 12 N -0.618 5.618 13 C 0.261 3.739 14 C -0.292 4.292 15 C 0.062 3.938 16 N -0.343 5.343 17 C 0.239 3.761 18 C -0.549 4.549 19 H 0.025 0.975 20 C 0.015 3.985 21 N -0.942 5.942 22 Si 0.956 3.044 23 H -0.266 1.266 24 H -0.228 1.228 25 H -0.278 1.278 26 N -0.347 5.347 27 C -0.067 4.067 28 C -0.140 4.140 29 H 0.084 0.916 30 H 0.081 0.919 31 H 0.078 0.922 32 H 0.147 0.853 33 H 0.129 0.871 34 H 0.164 0.836 35 H 0.161 0.839 36 H 0.426 0.574 37 H 0.173 0.827 38 H 0.213 0.787 39 H 0.085 0.915 40 H 0.045 0.955 41 H 0.272 0.728 42 H 0.150 0.850 43 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.823 7.539 8.150 34.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.053 4.053 3 C -0.159 4.159 4 C -0.087 4.087 5 C -0.192 4.192 6 C 0.310 3.690 7 O -0.353 6.353 8 C -0.152 4.152 9 C -0.133 4.133 10 C 0.340 3.660 11 O -0.409 6.409 12 N -0.266 5.266 13 C 0.007 3.993 14 C -0.323 4.323 15 C -0.086 4.086 16 N -0.125 5.125 17 C 0.119 3.881 18 C -0.587 4.587 19 H 0.044 0.956 20 C -0.184 4.184 21 N -0.581 5.581 22 Si 0.777 3.223 23 H -0.191 1.191 24 H -0.151 1.151 25 H -0.204 1.204 26 N -0.178 5.178 27 C -0.085 4.085 28 C -0.158 4.158 29 H 0.103 0.897 30 H 0.100 0.900 31 H 0.097 0.903 32 H 0.165 0.835 33 H 0.147 0.853 34 H 0.181 0.819 35 H 0.178 0.822 36 H 0.264 0.736 37 H 0.191 0.809 38 H 0.229 0.771 39 H 0.103 0.897 40 H 0.063 0.937 41 H 0.081 0.919 42 H 0.168 0.832 43 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -31.551 7.900 8.058 33.508 hybrid contribution 0.695 -0.029 -0.170 0.716 sum -30.856 7.871 7.888 32.807 Atomic orbital electron populations 1.20966 0.88885 1.04254 1.03616 1.20638 0.97937 0.92912 0.93850 1.21309 0.93365 0.99184 1.02078 1.21492 0.94975 0.97519 0.94735 1.20303 0.93211 0.95574 1.10096 1.20864 0.89114 0.87871 0.71182 1.90613 1.71788 1.35224 1.37707 1.23950 0.94802 1.00191 0.96269 1.23244 0.95634 0.96644 0.97769 1.18893 0.80642 0.90442 0.76019 1.90702 1.68080 1.33542 1.48611 1.42425 1.06198 1.06498 1.71500 1.19446 0.90157 0.88155 1.01569 1.21794 1.01443 0.89184 1.19843 1.23288 0.84193 1.01033 1.00053 1.48541 1.07442 1.02108 1.54365 1.19916 0.76180 0.94782 0.97220 1.21246 0.98863 1.27043 1.11556 0.95628 1.25930 0.96864 0.98426 0.97200 1.70053 1.11518 1.45421 1.31131 0.85611 0.79507 0.78824 0.78381 1.19130 1.15053 1.20356 1.77346 1.12885 0.97626 1.29959 1.21753 0.95070 0.97453 0.94266 1.21405 0.93789 0.99073 1.01534 0.89719 0.90050 0.90300 0.83508 0.85272 0.81900 0.82185 0.73576 0.80938 0.77071 0.89717 0.93715 0.91886 0.83232 0.83002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.52 10.00 71.23 0.71 0.19 16 2 C -0.05 -0.52 5.89 -19.78 -0.12 -0.63 16 3 C -0.14 -1.61 9.68 22.23 0.22 -1.40 16 4 C -0.07 -1.07 9.60 22.55 0.22 -0.85 16 5 C -0.19 -3.15 5.88 -20.04 -0.12 -3.26 16 6 C 0.43 8.25 7.10 27.21 0.19 8.45 16 7 O -0.47 -11.62 16.25 -3.87 -0.06 -11.69 16 8 C -0.13 -2.33 9.07 23.82 0.22 -2.12 16 9 C -0.11 -2.20 9.60 23.85 0.23 -1.97 16 10 C 0.55 14.71 7.75 86.69 0.67 15.38 16 11 O -0.53 -16.52 13.37 -3.93 -0.05 -16.57 16 12 N -0.62 -18.58 5.44 -310.47 -1.69 -20.27 16 13 C 0.26 10.22 8.10 133.38 1.08 11.30 16 14 C -0.29 -10.68 9.60 22.11 0.21 -10.47 16 15 C 0.06 2.23 11.43 83.51 0.95 3.18 16 16 N -0.34 -15.16 3.67 -351.86 -1.29 -16.45 16 17 C 0.24 10.93 5.33 85.63 0.46 11.39 16 18 C -0.55 -31.66 9.79 25.60 0.25 -31.41 16 19 H 0.03 1.73 8.06 -2.91 -0.02 1.70 16 20 C 0.01 0.83 5.47 84.65 0.46 1.29 16 21 N -0.94 -58.17 13.96 21.45 0.30 -57.87 16 22 Si 0.96 40.48 27.47 68.60 1.88 42.37 16 23 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 24 H -0.23 -8.25 6.54 99.48 0.65 -7.60 16 25 H -0.28 -11.62 7.11 99.48 0.71 -10.91 16 26 N -0.35 -16.06 12.42 -54.52 -0.68 -16.73 16 27 C -0.07 -0.84 9.46 22.55 0.21 -0.63 16 28 C -0.14 -1.40 9.68 22.23 0.22 -1.19 16 29 H 0.08 0.26 8.14 -2.39 -0.02 0.24 16 30 H 0.08 0.21 8.08 -2.39 -0.02 0.19 16 31 H 0.08 0.22 8.08 -2.39 -0.02 0.20 16 32 H 0.15 1.02 8.06 -2.91 -0.02 1.00 16 33 H 0.13 2.03 7.65 -2.91 -0.02 2.01 16 34 H 0.16 2.43 5.82 -2.91 -0.02 2.41 16 35 H 0.16 2.69 7.53 -2.91 -0.02 2.67 16 36 H 0.43 10.64 8.81 -92.70 -0.82 9.83 16 37 H 0.17 5.92 5.91 -2.91 -0.02 5.90 16 38 H 0.21 5.44 8.06 -2.91 -0.02 5.42 16 39 H 0.09 3.34 7.12 -2.39 -0.02 3.33 16 40 H 0.05 1.98 7.57 -2.39 -0.02 1.96 16 41 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 42 H 0.15 1.36 6.23 -2.91 -0.02 1.34 16 43 H 0.15 0.81 8.06 -2.91 -0.02 0.78 16 Total: -1.00 -79.76 378.25 4.67 -75.09 By element: Atomic # 1 Polarization: 24.68 SS G_CDS: 0.19 Total: 24.87 kcal Atomic # 6 Polarization: -8.81 SS G_CDS: 6.07 Total: -2.75 kcal Atomic # 7 Polarization: -107.96 SS G_CDS: -3.36 Total: -111.32 kcal Atomic # 8 Polarization: -28.14 SS G_CDS: -0.12 Total: -28.26 kcal Atomic # 14 Polarization: 40.48 SS G_CDS: 1.88 Total: 42.37 kcal Total: -79.76 4.67 -75.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001586593034.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.258 kcal (2) G-P(sol) polarization free energy of solvation -79.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.086 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds