Wall clock time and date at job start Sat Apr 11 2020 05:40:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31570 * 1 3 3 Si 1.86794 * 120.00379 * 2 1 4 4 H 1.48493 * 109.47610 * 270.00546 * 3 2 1 5 5 H 1.48501 * 109.46828 * 30.00324 * 3 2 1 6 6 H 1.48500 * 109.47013 * 149.99911 * 3 2 1 7 7 C 1.38640 * 119.99760 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99766 * 0.02562 * 7 2 1 9 9 O 1.34815 * 119.99850 * 179.97438 * 7 2 1 10 10 C 1.35773 * 116.99614 * 174.96455 * 9 7 2 11 11 C 1.38905 * 120.00249 * 5.34385 * 10 9 7 12 12 C 1.38000 * 120.00532 * 179.97438 * 11 10 9 13 13 C 1.38921 * 119.99811 * 0.02562 * 12 11 10 14 14 N 1.39989 * 120.00723 * 179.97438 * 13 12 11 15 15 C 1.34783 * 119.99734 * 35.13106 * 14 13 12 16 16 O 1.21295 * 119.99686 * 355.48614 * 15 14 13 17 17 C 1.50695 * 120.00241 * 175.48557 * 15 14 13 18 18 H 1.09008 * 109.78951 * 60.50144 * 17 15 14 19 19 C 1.53301 * 109.63423 * 180.99512 * 17 15 14 20 20 C 1.52808 * 108.52966 * 189.43371 * 19 17 15 21 21 C 1.50447 * 110.45049 * 308.92723 * 20 19 17 22 22 N 1.32889 * 118.54278 * 197.63142 * 21 20 19 23 23 C 1.31602 * 121.06433 * 180.55360 * 22 21 20 24 24 N 1.31815 * 121.66780 * 0.02562 * 23 22 21 25 25 C 1.32190 * 120.64543 * 359.84857 * 24 23 22 26 26 C 1.37762 * 122.57288 * 17.94756 * 21 20 19 27 27 C 1.50343 * 122.79546 * 359.02360 * 26 21 20 28 28 C 1.38923 * 119.99328 * 0.25961 * 13 12 11 29 29 C 1.37997 * 120.00197 * 359.46379 * 28 13 12 30 30 H 0.96998 * 120.00161 * 359.97438 * 1 2 3 31 31 H 1.07998 * 120.00145 * 359.97438 * 11 10 9 32 32 H 1.08001 * 120.00610 * 180.02562 * 12 11 10 33 33 H 0.96998 * 120.00453 * 215.13627 * 14 13 12 34 34 H 1.08994 * 109.63097 * 309.15180 * 19 17 15 35 35 H 1.09000 * 109.62419 * 69.72712 * 19 17 15 36 36 H 1.08996 * 109.30802 * 188.62533 * 20 19 17 37 37 H 1.08997 * 109.30828 * 69.22472 * 20 19 17 38 38 H 1.07996 * 119.16633 * 180.02562 * 23 22 21 39 39 H 1.07996 * 120.36534 * 180.02562 * 25 24 23 40 40 H 1.09003 * 109.30872 * 138.08884 * 27 26 21 41 41 H 1.09005 * 109.30777 * 257.68547 * 27 26 21 42 42 H 1.08011 * 119.99768 * 179.72003 * 28 13 12 43 43 H 1.08001 * 120.00383 * 180.29593 * 29 28 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2498 1.6176 0.0000 4 1 2.4972 2.0464 -1.4000 5 1 1.4473 2.6525 0.7001 6 1 3.5473 1.4399 0.7001 7 6 2.0088 -1.2007 -0.0005 8 1 1.4688 -2.1360 -0.0014 9 8 3.3570 -1.2007 -0.0011 10 6 3.9733 -2.4059 0.1046 11 6 3.2214 -3.5738 0.0951 12 6 3.8478 -4.7987 0.2020 13 6 5.2305 -4.8639 0.3196 14 7 5.8661 -6.1064 0.4286 15 6 5.3807 -7.1724 -0.2381 16 8 4.3477 -7.0757 -0.8665 17 6 6.1212 -8.4844 -0.2030 18 1 6.1930 -8.8402 0.8249 19 6 5.3773 -9.5188 -1.0554 20 6 6.0088 -10.8896 -0.8163 21 6 7.5010 -10.8192 -0.9942 22 7 8.1728 -11.9510 -1.1775 23 6 9.4802 -11.9481 -1.3276 24 7 10.1771 -10.8295 -1.3024 25 6 9.5764 -9.6652 -1.1267 26 6 8.1958 -9.6299 -0.9679 27 6 7.5236 -8.2981 -0.7809 28 6 5.9820 -3.6955 0.3351 29 6 5.3559 -2.4709 0.2225 30 1 -0.4850 0.8400 0.0004 31 1 2.1465 -3.5232 0.0040 32 1 3.2633 -5.7068 0.1941 33 1 6.6559 -6.2002 0.9839 34 1 4.3267 -9.5442 -0.7662 35 1 5.4636 -9.2548 -2.1094 36 1 5.5946 -11.6059 -1.5259 37 1 5.7819 -11.2190 0.1976 38 1 9.9951 -12.8858 -1.4752 39 1 10.1518 -8.7515 -1.1072 40 1 8.1162 -7.6878 -0.0994 41 1 7.4492 -7.7936 -1.7443 42 1 7.0566 -3.7459 0.4311 43 1 5.9405 -1.5628 0.2297 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001645885282.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:14 Heat of formation + Delta-G solvation = 7.813699 kcal Electronic energy + Delta-G solvation = -27565.190249 eV Core-core repulsion = 23575.928210 eV Total energy + Delta-G solvation = -3989.262039 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.81692 -40.41465 -38.99873 -37.37724 -36.43493 -34.56166 -34.06152 -32.35996 -31.86613 -30.87138 -30.32588 -28.19883 -25.82193 -25.20933 -24.53274 -23.45601 -22.67571 -21.83115 -20.72982 -19.90738 -18.41733 -17.95498 -17.59350 -17.39410 -16.86808 -16.64230 -15.86234 -15.43383 -14.95060 -14.68978 -14.35261 -14.30587 -14.16954 -14.00167 -13.91377 -13.81693 -13.73389 -13.42602 -12.82009 -12.63793 -12.45335 -12.30098 -12.24668 -11.78130 -11.68155 -11.57185 -11.36049 -11.20539 -10.98415 -10.79859 -10.76878 -10.27644 -9.81036 -9.70286 -9.65622 -9.59435 -9.27510 -8.79847 -8.33495 -7.11757 -6.43249 -4.09266 0.46373 0.61965 1.92317 2.06988 2.66365 3.11080 3.21343 3.24104 3.31461 3.37919 3.57411 3.77731 3.98427 4.06313 4.16956 4.21624 4.34114 4.46209 4.56796 4.79370 4.80746 4.83510 4.93852 4.99468 5.08190 5.08499 5.13780 5.33219 5.42565 5.50014 5.57750 5.61201 5.70994 5.85639 6.00554 6.03125 6.05033 6.19555 6.53961 6.55851 6.71409 6.84639 7.04760 7.25944 7.49630 7.59302 7.66574 7.76878 8.00062 8.22635 8.91472 9.52802 10.64218 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.032367 B = 0.001959 C = 0.001870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.877072 B =14286.328460 C =14973.540268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.063 3.937 3 Si 0.906 3.094 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.259 1.259 7 C -0.389 4.389 8 H 0.107 0.893 9 O -0.216 6.216 10 C 0.152 3.848 11 C -0.207 4.207 12 C -0.066 4.066 13 C 0.040 3.960 14 N -0.660 5.660 15 C 0.511 3.489 16 O -0.518 6.518 17 C -0.107 4.107 18 H 0.103 0.897 19 C -0.100 4.100 20 C -0.074 4.074 21 C 0.182 3.818 22 N -0.522 5.522 23 C 0.289 3.711 24 N -0.523 5.523 25 C 0.152 3.848 26 C -0.178 4.178 27 C -0.064 4.064 28 C -0.095 4.095 29 C -0.178 4.178 30 H 0.280 0.720 31 H 0.137 0.863 32 H 0.128 0.872 33 H 0.402 0.598 34 H 0.091 0.909 35 H 0.076 0.924 36 H 0.096 0.904 37 H 0.093 0.907 38 H 0.196 0.804 39 H 0.169 0.831 40 H 0.088 0.912 41 H 0.091 0.909 42 H 0.116 0.884 43 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.138 -20.395 0.761 27.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.141 4.141 3 Si 0.732 3.268 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.184 1.184 7 C -0.465 4.465 8 H 0.124 0.876 9 O -0.121 6.121 10 C 0.099 3.901 11 C -0.227 4.227 12 C -0.086 4.086 13 C -0.052 4.052 14 N -0.305 5.305 15 C 0.298 3.702 16 O -0.393 6.393 17 C -0.128 4.128 18 H 0.121 0.879 19 C -0.139 4.139 20 C -0.112 4.112 21 C 0.038 3.962 22 N -0.235 5.235 23 C 0.001 3.999 24 N -0.236 5.236 25 C -0.015 4.015 26 C -0.183 4.183 27 C -0.103 4.103 28 C -0.115 4.115 29 C -0.198 4.198 30 H 0.090 0.910 31 H 0.154 0.846 32 H 0.145 0.855 33 H 0.236 0.764 34 H 0.110 0.890 35 H 0.095 0.905 36 H 0.114 0.886 37 H 0.112 0.888 38 H 0.212 0.788 39 H 0.187 0.813 40 H 0.106 0.894 41 H 0.110 0.890 42 H 0.134 0.866 43 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 17.749 -20.870 0.132 27.397 hybrid contribution 0.290 1.351 0.370 1.430 sum 18.039 -19.519 0.502 26.583 Atomic orbital electron populations 1.69653 1.05564 1.28517 1.47810 1.24480 0.95046 0.98853 0.95688 0.86166 0.80285 0.81403 0.78957 1.19883 1.20819 1.18353 1.20779 0.76856 0.96688 1.52127 0.87554 1.83563 1.22655 1.25658 1.80179 1.19159 0.91706 0.85587 0.93612 1.21235 1.01335 0.91318 1.08834 1.20906 0.92441 0.97827 0.97402 1.17310 0.91728 0.83608 1.12552 1.43243 1.31255 1.08081 1.47887 1.20457 0.85771 0.85089 0.78922 1.90740 1.23149 1.83645 1.41812 1.21357 0.95132 0.93926 1.02395 0.87890 1.21443 1.00366 0.91347 1.00711 1.20496 0.87577 0.98981 1.04130 1.21415 0.97201 0.87678 0.89882 1.68415 1.10546 1.30563 1.14017 1.24922 0.86854 0.96874 0.91214 1.68430 1.41538 0.99323 1.14353 1.23312 0.91323 0.96699 0.90183 1.21091 0.96034 0.97132 1.04000 1.20312 0.93920 0.93073 1.02974 1.20343 0.98121 0.90785 1.02271 1.19989 0.91940 0.97344 1.10511 0.91020 0.84579 0.85464 0.76383 0.89002 0.90479 0.88556 0.88845 0.78793 0.81342 0.89351 0.89048 0.86583 0.86078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.23 13.96 55.48 0.77 -24.45 16 2 C 0.06 1.75 5.49 -17.52 -0.10 1.65 16 3 Si 0.91 21.41 28.62 -169.99 -4.86 16.55 16 4 H -0.27 -6.36 7.11 56.52 0.40 -5.95 16 5 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 6 H -0.26 -6.10 7.11 56.52 0.40 -5.70 16 7 C -0.39 -10.87 9.94 30.88 0.31 -10.57 16 8 H 0.11 3.05 5.43 -52.49 -0.28 2.77 16 9 O -0.22 -5.60 8.58 0.02 0.00 -5.59 16 10 C 0.15 3.43 6.65 -39.08 -0.26 3.17 16 11 C -0.21 -4.51 9.16 -39.42 -0.36 -4.87 16 12 C -0.07 -1.25 8.69 -39.42 -0.34 -1.59 16 13 C 0.04 0.64 6.30 -83.63 -0.53 0.11 16 14 N -0.66 -7.47 5.23 -9.82 -0.05 -7.52 16 15 C 0.51 5.98 6.98 -10.98 -0.08 5.90 16 16 O -0.52 -8.38 13.28 5.54 0.07 -8.31 16 17 C -0.11 -0.79 2.55 -91.71 -0.23 -1.03 16 18 H 0.10 0.60 8.10 -51.92 -0.42 0.17 16 19 C -0.10 -0.78 4.71 -26.67 -0.13 -0.91 16 20 C -0.07 -0.50 5.96 -28.10 -0.17 -0.67 16 21 C 0.18 1.51 6.62 -82.43 -0.55 0.96 16 22 N -0.52 -4.80 10.32 -11.00 -0.11 -4.91 16 23 C 0.29 2.37 12.29 -92.30 -1.13 1.23 16 24 N -0.52 -4.57 10.44 -14.55 -0.15 -4.73 16 25 C 0.15 1.09 10.94 -17.11 -0.19 0.91 16 26 C -0.18 -1.29 5.73 -104.68 -0.60 -1.89 16 27 C -0.06 -0.39 4.90 -28.15 -0.14 -0.53 16 28 C -0.09 -1.46 9.96 -39.42 -0.39 -1.85 16 29 C -0.18 -3.32 9.98 -39.42 -0.39 -3.72 16 30 H 0.28 7.42 8.31 -40.82 -0.34 7.08 16 31 H 0.14 3.14 5.63 -52.49 -0.30 2.85 16 32 H 0.13 2.40 6.22 -52.49 -0.33 2.08 16 33 H 0.40 2.99 8.60 -40.82 -0.35 2.64 16 34 H 0.09 0.79 7.80 -51.93 -0.41 0.38 16 35 H 0.08 0.68 8.10 -51.93 -0.42 0.26 16 36 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.20 0.99 8.06 -52.49 -0.42 0.57 16 39 H 0.17 0.74 8.06 -52.49 -0.42 0.31 16 40 H 0.09 0.34 7.95 -51.93 -0.41 -0.07 16 41 H 0.09 0.62 8.11 -51.93 -0.42 0.20 16 42 H 0.12 1.34 8.06 -52.48 -0.42 0.92 16 43 H 0.12 2.07 8.06 -52.49 -0.42 1.65 16 LS Contribution 361.37 15.07 5.45 5.45 Total: -1.00 -33.60 361.37 -9.17 -42.77 By element: Atomic # 1 Polarization: 9.46 SS G_CDS: -5.01 Total: 4.45 kcal Atomic # 6 Polarization: -8.42 SS G_CDS: -5.27 Total: -13.69 kcal Atomic # 7 Polarization: -42.07 SS G_CDS: 0.46 Total: -41.61 kcal Atomic # 8 Polarization: -13.98 SS G_CDS: 0.07 Total: -13.91 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -4.86 Total: 16.55 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -33.60 -9.17 -42.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001645885282.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.582 kcal (2) G-P(sol) polarization free energy of solvation -33.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.768 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds