Wall clock time and date at job start Sat Apr 11 2020 05:38:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31551 * 1 3 3 Si 1.86803 * 120.00066 * 2 1 4 4 H 1.48498 * 109.46799 * 269.99796 * 3 2 1 5 5 H 1.48496 * 109.47242 * 29.99649 * 3 2 1 6 6 H 1.48497 * 109.47165 * 149.99957 * 3 2 1 7 7 C 1.38655 * 120.00234 * 179.97438 * 2 1 3 8 8 H 1.07990 * 120.00512 * 179.97438 * 7 2 1 9 9 O 1.34830 * 119.99694 * 0.02562 * 7 2 1 10 10 C 1.35755 * 117.00207 * 185.05491 * 9 7 2 11 11 C 1.38904 * 120.06444 * 354.48185 * 10 9 7 12 12 C 1.38073 * 119.92599 * 179.97438 * 11 10 9 13 13 C 1.38320 * 120.07328 * 359.74577 * 12 11 10 14 14 C 1.38278 * 120.13619 * 0.51124 * 13 12 11 15 15 C 1.50701 * 119.96715 * 179.76851 * 14 13 12 16 16 N 1.46904 * 109.47279 * 269.72506 * 15 14 13 17 17 C 1.46889 * 111.00128 * 180.02562 * 16 15 14 18 18 C 1.50698 * 109.47220 * 179.97438 * 17 16 15 19 19 C 1.38731 * 119.78023 * 270.17763 * 18 17 16 20 20 C 1.37667 * 120.49910 * 180.26615 * 19 18 17 21 21 C 1.39705 * 119.77840 * 359.51251 * 20 19 18 22 22 N 1.35906 * 133.44836 * 180.25094 * 21 20 19 23 23 C 1.30752 * 109.62665 * 180.02562 * 22 21 20 24 24 O 1.35275 * 125.03290 * 179.97438 * 23 22 21 25 25 N 1.36390 * 109.93392 * 0.02562 * 23 22 21 26 26 H 0.96999 * 126.36175 * 179.97438 * 25 23 22 27 27 C 1.38450 * 107.26768 * 359.97438 * 25 23 22 28 28 C 1.37929 * 119.78763 * 89.99459 * 18 17 16 29 29 C 1.38124 * 120.06860 * 359.49004 * 14 13 12 30 30 H 0.97006 * 120.00346 * 0.02562 * 1 2 3 31 31 H 1.08001 * 120.03459 * 359.95914 * 11 10 9 32 32 H 1.08007 * 119.96702 * 180.02562 * 12 11 10 33 33 H 1.08005 * 119.93531 * 180.27817 * 13 12 11 34 34 H 1.08993 * 109.47449 * 149.72012 * 15 14 13 35 35 H 1.09002 * 109.47094 * 29.72079 * 15 14 13 36 36 H 1.00900 * 110.99569 * 303.95463 * 16 15 14 37 37 H 1.09000 * 109.47716 * 59.99523 * 17 16 15 38 38 H 1.09009 * 109.47136 * 299.99720 * 17 16 15 39 39 H 1.07990 * 119.74998 * 0.05826 * 19 18 17 40 40 H 1.08005 * 120.11139 * 179.79162 * 20 19 18 41 41 H 0.96710 * 113.99850 * 90.02983 * 24 23 22 42 42 H 1.08009 * 120.07797 * 359.95756 * 28 18 17 43 43 H 1.08005 * 120.03369 * 180.23487 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 2.4970 2.0463 -1.4001 5 1 1.4470 2.6527 0.6999 6 1 3.5471 1.4402 0.7000 7 6 2.0088 -1.2008 0.0005 8 1 3.0887 -1.2008 0.0001 9 8 1.3347 -2.3684 0.0005 10 6 2.0699 -3.5046 0.1077 11 6 3.4573 -3.4394 0.0955 12 6 4.2023 -4.5967 0.2052 13 6 3.5685 -5.8196 0.3323 14 6 2.1874 -5.8883 0.3394 15 6 1.5008 -7.2232 0.4728 16 7 1.2716 -7.7916 -0.8622 17 6 0.6019 -9.0958 -0.7712 18 6 0.3835 -9.6461 -2.1570 19 6 -0.7864 -9.3478 -2.8404 20 6 -1.0037 -9.8471 -4.1048 21 6 -0.0347 -10.6521 -4.7089 22 7 0.0444 -11.2741 -5.9146 23 6 1.1784 -11.9190 -6.0026 24 8 1.5775 -12.6458 -7.0714 25 7 1.8987 -11.7514 -4.8566 26 1 2.7733 -12.1256 -4.6672 27 6 1.1496 -10.9477 -4.0141 28 6 1.3495 -10.4400 -2.7391 29 6 1.4365 -4.7342 0.2300 30 1 -0.4851 0.8401 -0.0004 31 1 3.9528 -2.4845 0.0002 32 1 5.2812 -4.5468 0.1962 33 1 4.1534 -6.7231 0.4224 34 1 0.5454 -7.0912 0.9805 35 1 2.1298 -7.8990 1.0523 36 1 0.7448 -7.1546 -1.4408 37 1 -0.3599 -8.9764 -0.2723 38 1 1.2243 -9.7848 -0.2002 39 1 -1.5338 -8.7220 -2.3757 40 1 -1.9182 -9.6136 -4.6298 41 1 2.0755 -12.1393 -7.7277 42 1 2.2598 -10.6656 -2.2033 43 1 0.3578 -4.7882 0.2394 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001649449304.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:16 Heat of formation + Delta-G solvation = 36.459200 kcal Electronic energy + Delta-G solvation = -26739.055622 eV Core-core repulsion = 22751.035746 eV Total energy + Delta-G solvation = -3988.019876 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.40819 -39.13419 -38.75018 -37.48452 -36.72306 -35.10304 -33.50399 -32.28808 -31.34371 -30.15224 -29.42384 -28.76961 -25.96829 -25.19684 -23.71399 -23.22619 -22.00240 -21.58720 -21.47175 -20.63817 -19.39183 -17.79471 -17.65381 -17.40130 -17.01641 -16.32550 -15.78940 -15.08519 -14.92449 -14.87658 -14.62311 -14.41293 -14.28806 -14.18013 -13.98370 -13.70527 -13.50621 -13.01720 -12.53102 -12.52380 -12.20003 -12.02038 -11.86061 -11.70170 -11.53108 -11.51690 -11.24111 -11.01333 -10.80185 -10.68150 -10.60365 -10.42136 -10.30356 -9.33965 -8.83702 -8.67939 -8.49412 -8.25251 -8.05797 -7.22189 -6.44048 -4.03281 0.58583 1.22897 1.98482 2.11678 2.36237 2.40349 3.12993 3.13902 3.18643 3.39556 3.56774 3.97009 4.19239 4.32496 4.63284 4.72345 4.77002 4.88317 5.06357 5.07838 5.10775 5.16334 5.27958 5.35448 5.41531 5.55783 5.58153 5.76602 5.78185 5.84957 5.97056 6.03081 6.15298 6.19638 6.32977 6.35928 6.39072 6.57554 6.65762 6.90644 6.99273 7.07709 7.21453 7.26766 7.38651 7.43003 7.43489 7.44178 7.83018 8.00865 9.01823 9.72083 10.74088 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.015641 B = 0.001884 C = 0.001829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1789.766158 B =14859.022381 C =15305.542456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.864 5.864 2 C 0.039 3.961 3 Si 0.940 3.060 4 H -0.273 1.273 5 H -0.278 1.278 6 H -0.268 1.268 7 C -0.391 4.391 8 H 0.091 0.909 9 O -0.180 6.180 10 C 0.152 3.848 11 C -0.230 4.230 12 C -0.078 4.078 13 C -0.189 4.189 14 C -0.047 4.047 15 C 0.106 3.894 16 N -0.679 5.679 17 C 0.098 3.902 18 C -0.057 4.057 19 C -0.114 4.114 20 C -0.064 4.064 21 C 0.055 3.945 22 N -0.486 5.486 23 C 0.448 3.552 24 O -0.444 6.444 25 N -0.602 5.602 26 H 0.423 0.577 27 C 0.057 3.943 28 C -0.087 4.087 29 C -0.185 4.185 30 H 0.269 0.731 31 H 0.125 0.875 32 H 0.106 0.894 33 H 0.105 0.895 34 H 0.037 0.963 35 H 0.076 0.924 36 H 0.348 0.652 37 H 0.043 0.957 38 H 0.080 0.920 39 H 0.132 0.868 40 H 0.133 0.867 41 H 0.410 0.590 42 H 0.127 0.873 43 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.996 -22.503 -6.358 23.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.499 5.499 2 C -0.165 4.165 3 Si 0.765 3.235 4 H -0.199 1.199 5 H -0.203 1.203 6 H -0.192 1.192 7 C -0.468 4.468 8 H 0.109 0.891 9 O -0.083 6.083 10 C 0.099 3.901 11 C -0.250 4.250 12 C -0.096 4.096 13 C -0.208 4.208 14 C -0.048 4.048 15 C -0.022 4.022 16 N -0.311 5.311 17 C -0.030 4.030 18 C -0.059 4.059 19 C -0.134 4.134 20 C -0.084 4.084 21 C -0.062 4.062 22 N -0.218 5.218 23 C 0.144 3.856 24 O -0.246 6.246 25 N -0.227 5.227 26 H 0.262 0.738 27 C -0.051 4.051 28 C -0.109 4.109 29 C -0.205 4.205 30 H 0.079 0.921 31 H 0.143 0.857 32 H 0.124 0.876 33 H 0.123 0.877 34 H 0.055 0.945 35 H 0.095 0.905 36 H 0.167 0.833 37 H 0.061 0.939 38 H 0.099 0.901 39 H 0.150 0.850 40 H 0.151 0.849 41 H 0.269 0.731 42 H 0.145 0.855 43 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 3.249 -23.024 -6.865 24.245 hybrid contribution 1.142 1.154 0.393 1.671 sum 4.391 -21.870 -6.473 23.226 Atomic orbital electron populations 1.70034 1.05928 1.27604 1.46323 1.25275 0.95840 0.98792 0.96635 0.85723 0.78913 0.80162 0.78698 1.19902 1.20281 1.19233 1.21305 0.91763 0.80841 1.52857 0.89138 1.83976 1.34246 1.11388 1.78722 1.19312 0.90264 0.88027 0.92511 1.21193 0.93857 0.98992 1.10938 1.20743 0.98420 0.92439 0.98030 1.20407 0.93487 0.96760 1.10189 1.19138 0.93497 0.92585 0.99587 1.20814 0.98490 0.93181 0.89748 1.60583 1.52683 1.04145 1.13647 1.20876 0.97797 0.92139 0.92228 1.19519 0.93396 0.96774 0.96252 1.20887 0.97657 1.00584 0.94295 1.20238 0.97784 0.95956 0.94392 1.18803 0.95057 1.01546 0.90837 1.70661 1.17559 1.13373 1.20163 1.20330 0.87688 0.93984 0.83647 1.84824 1.75161 1.35232 1.29397 1.43391 1.19878 1.44246 1.15182 0.73830 1.18614 0.94079 0.97993 0.94451 1.19752 1.00005 0.99644 0.91460 1.20034 0.99101 0.90095 1.11225 0.92068 0.85683 0.87554 0.87666 0.94467 0.90545 0.83316 0.93868 0.90118 0.84995 0.84943 0.73135 0.85507 0.86874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.27 13.67 55.48 0.76 -24.51 16 2 C 0.04 1.06 5.49 -17.52 -0.10 0.96 16 3 Si 0.94 20.50 29.55 -169.99 -5.02 15.48 16 4 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 5 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 6 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 7 C -0.39 -10.91 9.49 30.89 0.29 -10.62 16 8 H 0.09 2.34 5.20 -52.49 -0.27 2.07 16 9 O -0.18 -5.10 9.76 0.03 0.00 -5.10 16 10 C 0.15 3.65 6.65 -39.11 -0.26 3.39 16 11 C -0.23 -5.00 9.17 -39.40 -0.36 -5.36 16 12 C -0.08 -1.43 10.04 -39.61 -0.40 -1.83 16 13 C -0.19 -3.23 9.70 -39.54 -0.38 -3.61 16 14 C -0.05 -0.81 5.39 -104.65 -0.56 -1.38 16 15 C 0.11 1.39 5.81 -4.97 -0.03 1.36 16 16 N -0.68 -8.23 6.48 -116.34 -0.75 -8.99 16 17 C 0.10 0.93 5.80 -4.98 -0.03 0.90 16 18 C -0.06 -0.57 5.40 -104.55 -0.56 -1.13 16 19 C -0.11 -1.11 9.66 -39.61 -0.38 -1.50 16 20 C -0.06 -0.69 10.10 -39.24 -0.40 -1.09 16 21 C 0.06 0.67 7.22 -84.68 -0.61 0.06 16 22 N -0.49 -6.12 11.31 -12.24 -0.14 -6.26 16 23 C 0.45 4.33 9.39 -88.92 -0.84 3.49 16 24 O -0.44 -2.95 13.63 -17.52 -0.24 -3.19 16 25 N -0.60 -4.94 6.26 -11.91 -0.07 -5.02 16 26 H 0.42 2.05 8.96 -40.82 -0.37 1.68 16 27 C 0.06 0.60 7.30 -83.87 -0.61 -0.01 16 28 C -0.09 -0.85 9.70 -39.53 -0.38 -1.23 16 29 C -0.18 -3.79 9.65 -39.40 -0.38 -4.17 16 30 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 31 H 0.13 2.72 5.64 -52.49 -0.30 2.43 16 32 H 0.11 1.65 8.06 -52.48 -0.42 1.22 16 33 H 0.11 1.55 8.06 -52.48 -0.42 1.13 16 34 H 0.04 0.47 8.08 -51.93 -0.42 0.05 16 35 H 0.08 0.90 8.08 -51.93 -0.42 0.48 16 36 H 0.35 4.52 8.71 -39.29 -0.34 4.18 16 37 H 0.04 0.38 8.08 -51.93 -0.42 -0.04 16 38 H 0.08 0.69 8.08 -51.92 -0.42 0.27 16 39 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 40 H 0.13 1.25 8.06 -52.48 -0.42 0.82 16 41 H 0.41 0.53 9.06 45.56 0.41 0.94 16 42 H 0.13 1.03 8.06 -52.48 -0.42 0.61 16 43 H 0.11 2.25 8.06 -52.48 -0.42 1.82 16 LS Contribution 374.49 15.07 5.64 5.64 Total: -1.00 -34.61 374.49 -10.03 -44.65 By element: Atomic # 1 Polarization: 13.27 SS G_CDS: -4.22 Total: 9.05 kcal Atomic # 6 Polarization: -15.77 SS G_CDS: -5.99 Total: -21.76 kcal Atomic # 7 Polarization: -44.56 SS G_CDS: -0.21 Total: -44.77 kcal Atomic # 8 Polarization: -8.05 SS G_CDS: -0.24 Total: -8.28 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -34.61 -10.03 -44.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649449304.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.105 kcal (2) G-P(sol) polarization free energy of solvation -34.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.646 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds