Wall clock time and date at job start Sat Apr 11 2020 05:38:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31551 * 1 3 3 Si 1.86803 * 120.00066 * 2 1 4 4 H 1.48498 * 109.46799 * 269.99796 * 3 2 1 5 5 H 1.48496 * 109.47242 * 29.99649 * 3 2 1 6 6 H 1.48497 * 109.47165 * 149.99957 * 3 2 1 7 7 C 1.38655 * 120.00234 * 179.97438 * 2 1 3 8 8 H 1.07990 * 120.00512 * 179.97438 * 7 2 1 9 9 O 1.34830 * 119.99694 * 0.02562 * 7 2 1 10 10 C 1.35755 * 117.00207 * 185.05491 * 9 7 2 11 11 C 1.38904 * 120.06444 * 354.48185 * 10 9 7 12 12 C 1.38073 * 119.92599 * 179.97438 * 11 10 9 13 13 C 1.38320 * 120.07328 * 359.74577 * 12 11 10 14 14 C 1.38278 * 120.13619 * 0.51124 * 13 12 11 15 15 C 1.50701 * 119.96715 * 179.76851 * 14 13 12 16 16 N 1.46904 * 109.47279 * 269.72506 * 15 14 13 17 17 C 1.46889 * 111.00128 * 180.02562 * 16 15 14 18 18 C 1.50698 * 109.47220 * 179.97438 * 17 16 15 19 19 C 1.38731 * 119.78023 * 270.17763 * 18 17 16 20 20 C 1.37667 * 120.49910 * 180.26615 * 19 18 17 21 21 C 1.39705 * 119.77840 * 359.51251 * 20 19 18 22 22 N 1.35906 * 133.44836 * 180.25094 * 21 20 19 23 23 C 1.30752 * 109.62665 * 180.02562 * 22 21 20 24 24 O 1.35275 * 125.03290 * 179.97438 * 23 22 21 25 25 N 1.36390 * 109.93392 * 0.02562 * 23 22 21 26 26 H 0.96999 * 126.36175 * 179.97438 * 25 23 22 27 27 C 1.38450 * 107.26768 * 359.97438 * 25 23 22 28 28 C 1.37929 * 119.78763 * 89.99459 * 18 17 16 29 29 C 1.38124 * 120.06860 * 359.49004 * 14 13 12 30 30 H 0.97006 * 120.00346 * 0.02562 * 1 2 3 31 31 H 1.08001 * 120.03459 * 359.95914 * 11 10 9 32 32 H 1.08007 * 119.96702 * 180.02562 * 12 11 10 33 33 H 1.08005 * 119.93531 * 180.27817 * 13 12 11 34 34 H 1.08993 * 109.47449 * 149.72012 * 15 14 13 35 35 H 1.09002 * 109.47094 * 29.72079 * 15 14 13 36 36 H 1.00900 * 110.99569 * 303.95463 * 16 15 14 37 37 H 1.09000 * 109.47716 * 59.99523 * 17 16 15 38 38 H 1.09009 * 109.47136 * 299.99720 * 17 16 15 39 39 H 1.07990 * 119.74998 * 0.05826 * 19 18 17 40 40 H 1.08005 * 120.11139 * 179.79162 * 20 19 18 41 41 H 0.96710 * 113.99850 * 90.02983 * 24 23 22 42 42 H 1.08009 * 120.07797 * 359.95756 * 28 18 17 43 43 H 1.08005 * 120.03369 * 180.23487 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 2.4970 2.0463 -1.4001 5 1 1.4470 2.6527 0.6999 6 1 3.5471 1.4402 0.7000 7 6 2.0088 -1.2008 0.0005 8 1 3.0887 -1.2008 0.0001 9 8 1.3347 -2.3684 0.0005 10 6 2.0699 -3.5046 0.1077 11 6 3.4573 -3.4394 0.0955 12 6 4.2023 -4.5967 0.2052 13 6 3.5685 -5.8196 0.3323 14 6 2.1874 -5.8883 0.3394 15 6 1.5008 -7.2232 0.4728 16 7 1.2716 -7.7916 -0.8622 17 6 0.6019 -9.0958 -0.7712 18 6 0.3835 -9.6461 -2.1570 19 6 -0.7864 -9.3478 -2.8404 20 6 -1.0037 -9.8471 -4.1048 21 6 -0.0347 -10.6521 -4.7089 22 7 0.0444 -11.2741 -5.9146 23 6 1.1784 -11.9190 -6.0026 24 8 1.5775 -12.6458 -7.0714 25 7 1.8987 -11.7514 -4.8566 26 1 2.7733 -12.1256 -4.6672 27 6 1.1496 -10.9477 -4.0141 28 6 1.3495 -10.4400 -2.7391 29 6 1.4365 -4.7342 0.2300 30 1 -0.4851 0.8401 -0.0004 31 1 3.9528 -2.4845 0.0002 32 1 5.2812 -4.5468 0.1962 33 1 4.1534 -6.7231 0.4224 34 1 0.5454 -7.0912 0.9805 35 1 2.1298 -7.8990 1.0523 36 1 0.7448 -7.1546 -1.4408 37 1 -0.3599 -8.9764 -0.2723 38 1 1.2243 -9.7848 -0.2002 39 1 -1.5338 -8.7220 -2.3757 40 1 -1.9182 -9.6136 -4.6298 41 1 2.0755 -12.1393 -7.7277 42 1 2.2598 -10.6656 -2.2033 43 1 0.3578 -4.7882 0.2394 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001649449304.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:16 Heat of formation + Delta-G solvation = 8.599293 kcal Electronic energy + Delta-G solvation = -26740.263718 eV Core-core repulsion = 22751.035746 eV Total energy + Delta-G solvation = -3989.227973 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.13451 -40.76369 -39.49897 -38.60347 -37.86487 -36.14821 -34.31320 -34.22775 -32.53019 -31.03545 -30.74080 -29.98901 -27.46299 -26.68822 -24.74621 -23.95343 -23.14326 -22.71958 -22.28936 -22.16473 -20.02760 -19.49587 -18.82163 -18.35407 -18.12556 -17.16631 -16.76311 -16.66475 -16.14092 -16.07886 -15.84830 -15.60673 -15.38982 -15.25419 -15.09037 -14.90194 -14.62990 -14.25440 -14.14983 -13.56617 -13.46201 -13.15130 -12.94241 -12.87146 -12.66224 -12.51135 -12.39558 -12.23730 -12.18608 -12.12715 -12.02132 -11.76708 -11.15680 -11.07073 -10.78816 -9.72617 -9.40124 -9.26905 -9.05373 -8.93515 -8.45350 -6.13386 -0.14428 0.45756 0.57930 0.80219 1.35379 1.35488 1.44788 1.52782 1.64561 2.18721 2.69932 2.80413 2.86938 3.17292 3.45091 3.53523 3.67276 3.91330 4.03174 4.09229 4.15758 4.18549 4.37144 4.37977 4.38760 4.52500 4.59313 4.66688 4.74203 4.77218 4.80717 4.86138 5.07156 5.10435 5.16104 5.32226 5.36310 5.41884 5.62958 5.69814 5.77568 5.83792 5.85120 5.92783 6.04705 6.08092 6.29418 6.39932 6.68199 6.70893 6.99735 7.81685 8.77922 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.015641 B = 0.001884 C = 0.001829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1789.766158 B =14859.022381 C =15305.542456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.025 4.025 3 Si 1.018 2.982 4 H -0.264 1.264 5 H -0.271 1.271 6 H -0.253 1.253 7 C -0.412 4.412 8 H 0.100 0.900 9 O -0.234 6.234 10 C 0.110 3.890 11 C -0.246 4.246 12 C -0.076 4.076 13 C -0.169 4.169 14 C -0.037 4.037 15 C 0.111 3.889 16 N -0.684 5.684 17 C 0.103 3.897 18 C -0.065 4.065 19 C -0.113 4.113 20 C -0.083 4.083 21 C 0.029 3.971 22 N -0.531 5.531 23 C 0.457 3.543 24 O -0.444 6.444 25 N -0.588 5.588 26 H 0.439 0.561 27 C 0.047 3.953 28 C -0.083 4.083 29 C -0.195 4.195 30 H 0.272 0.728 31 H 0.115 0.885 32 H 0.143 0.857 33 H 0.147 0.853 34 H 0.042 0.958 35 H 0.104 0.896 36 H 0.340 0.660 37 H 0.053 0.947 38 H 0.099 0.901 39 H 0.144 0.856 40 H 0.135 0.865 41 H 0.434 0.566 42 H 0.148 0.852 43 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.863 -24.846 -5.799 26.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.222 4.222 3 Si 0.837 3.163 4 H -0.189 1.189 5 H -0.196 1.196 6 H -0.177 1.177 7 C -0.488 4.488 8 H 0.117 0.883 9 O -0.141 6.141 10 C 0.060 3.940 11 C -0.265 4.265 12 C -0.094 4.094 13 C -0.188 4.188 14 C -0.037 4.037 15 C -0.017 4.017 16 N -0.315 5.315 17 C -0.024 4.024 18 C -0.067 4.067 19 C -0.134 4.134 20 C -0.103 4.103 21 C -0.088 4.088 22 N -0.264 5.264 23 C 0.152 3.848 24 O -0.250 6.250 25 N -0.214 5.214 26 H 0.281 0.719 27 C -0.062 4.062 28 C -0.105 4.105 29 C -0.215 4.215 30 H 0.081 0.919 31 H 0.133 0.867 32 H 0.160 0.840 33 H 0.164 0.836 34 H 0.060 0.940 35 H 0.122 0.878 36 H 0.157 0.843 37 H 0.071 0.929 38 H 0.117 0.883 39 H 0.162 0.838 40 H 0.153 0.847 41 H 0.296 0.704 42 H 0.165 0.835 43 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 6.185 -25.437 -6.316 26.929 hybrid contribution 0.365 1.479 0.159 1.532 sum 6.550 -23.957 -6.156 25.588 Atomic orbital electron populations 1.70181 1.07960 1.28688 1.49139 1.26569 0.96869 1.02698 0.96039 0.84600 0.77814 0.74682 0.79205 1.18885 1.19612 1.17692 1.21787 0.92439 0.81521 1.53038 0.88270 1.83936 1.35877 1.12538 1.81752 1.19913 0.91615 0.87985 0.94479 1.21297 0.93197 1.00167 1.11848 1.21158 1.00166 0.91566 0.96476 1.20968 0.93615 0.97709 1.06526 1.19604 0.93899 0.93311 0.96913 1.20826 0.98911 0.91265 0.90731 1.60592 1.53300 1.04885 1.12716 1.20909 0.98502 0.90881 0.92155 1.19626 0.93446 0.97091 0.96586 1.21072 0.98149 1.00241 0.93919 1.20403 0.98127 0.96653 0.95086 1.19127 0.96211 1.02223 0.91270 1.70601 1.19458 1.15291 1.21059 1.20399 0.87208 0.92738 0.84433 1.84793 1.75522 1.35378 1.29262 1.43283 1.20247 1.43558 1.14334 0.71897 1.18753 0.93952 0.98552 0.94912 1.19983 1.00524 0.98904 0.91063 1.20281 0.99385 0.90324 1.11535 0.91922 0.86732 0.83971 0.83571 0.94004 0.87825 0.84253 0.92927 0.88253 0.83820 0.84747 0.70355 0.83477 0.87404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.83 13.67 21.61 0.30 -56.53 16 2 C -0.02 -1.41 5.49 84.83 0.47 -0.94 16 3 Si 1.02 43.13 29.55 68.60 2.03 45.15 16 4 H -0.26 -10.64 7.11 99.48 0.71 -9.94 16 5 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 6 H -0.25 -9.96 7.11 99.48 0.71 -9.25 16 7 C -0.41 -24.14 9.49 67.92 0.64 -23.49 16 8 H 0.10 5.36 5.20 -2.92 -0.02 5.34 16 9 O -0.23 -14.15 9.76 -22.79 -0.22 -14.37 16 10 C 0.11 5.47 6.65 22.58 0.15 5.62 16 11 C -0.25 -10.70 9.17 22.39 0.21 -10.50 16 12 C -0.08 -2.55 10.04 22.25 0.22 -2.33 16 13 C -0.17 -5.06 9.70 22.30 0.22 -4.85 16 14 C -0.04 -1.16 5.39 -19.88 -0.11 -1.27 16 15 C 0.11 2.49 5.81 85.56 0.50 2.99 16 16 N -0.68 -14.39 6.48 -522.00 -3.38 -17.78 16 17 C 0.10 1.61 5.80 85.56 0.50 2.11 16 18 C -0.07 -1.15 5.40 -19.82 -0.11 -1.26 16 19 C -0.11 -2.13 9.66 22.25 0.22 -1.91 16 20 C -0.08 -1.81 10.10 22.49 0.23 -1.59 16 21 C 0.03 0.70 7.22 39.41 0.28 0.99 16 22 N -0.53 -13.35 11.31 -306.48 -3.47 -16.81 16 23 C 0.46 8.30 9.39 179.75 1.69 9.99 16 24 O -0.44 -5.14 13.63 -85.60 -1.17 -6.30 16 25 N -0.59 -8.57 6.26 -302.48 -1.89 -10.47 16 26 H 0.44 3.15 8.96 -92.71 -0.83 2.32 16 27 C 0.05 0.93 7.30 38.74 0.28 1.21 16 28 C -0.08 -1.41 9.70 22.30 0.22 -1.20 16 29 C -0.20 -8.11 9.65 22.39 0.22 -7.89 16 30 H 0.27 15.36 8.31 -92.70 -0.77 14.58 16 31 H 0.11 5.12 5.64 -2.91 -0.02 5.10 16 32 H 0.14 3.77 8.06 -2.91 -0.02 3.74 16 33 H 0.15 3.31 8.06 -2.91 -0.02 3.29 16 34 H 0.04 0.93 8.08 -2.39 -0.02 0.91 16 35 H 0.10 1.85 8.08 -2.39 -0.02 1.83 16 36 H 0.34 8.21 8.71 -89.69 -0.78 7.43 16 37 H 0.05 0.75 8.08 -2.39 -0.02 0.73 16 38 H 0.10 1.22 8.08 -2.38 -0.02 1.20 16 39 H 0.14 2.23 8.06 -2.92 -0.02 2.20 16 40 H 0.13 2.68 8.06 -2.91 -0.02 2.65 16 41 H 0.43 0.26 9.06 -74.05 -0.67 -0.42 16 42 H 0.15 1.83 8.06 -2.91 -0.02 1.80 16 43 H 0.11 4.46 8.06 -2.91 -0.02 4.44 16 Total: -1.00 -80.63 374.49 -3.18 -83.80 By element: Atomic # 1 Polarization: 28.80 SS G_CDS: -1.18 Total: 27.62 kcal Atomic # 6 Polarization: -40.13 SS G_CDS: 5.81 Total: -34.31 kcal Atomic # 7 Polarization: -93.15 SS G_CDS: -8.45 Total: -101.59 kcal Atomic # 8 Polarization: -19.28 SS G_CDS: -1.39 Total: -20.67 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.15 kcal Total: -80.63 -3.18 -83.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649449304.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.403 kcal (2) G-P(sol) polarization free energy of solvation -80.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.804 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds