Wall clock time and date at job start Sat Apr 11 2020 05:38:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31555 * 1 3 3 Si 1.86806 * 119.99722 * 2 1 4 4 H 1.48499 * 109.46906 * 269.99676 * 3 2 1 5 5 H 1.48498 * 109.47298 * 29.99748 * 3 2 1 6 6 H 1.48505 * 109.47050 * 150.00000 * 3 2 1 7 7 C 1.38652 * 120.00345 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99817 * 359.97438 * 7 2 1 9 9 O 1.34831 * 120.00286 * 180.02562 * 7 2 1 10 10 C 1.35746 * 117.00307 * 185.05811 * 9 7 2 11 11 C 1.38904 * 120.06836 * 354.48539 * 10 9 7 12 12 C 1.38077 * 119.93083 * 179.97438 * 11 10 9 13 13 C 1.38319 * 120.06796 * 359.74411 * 12 11 10 14 14 C 1.38275 * 120.14113 * 0.51581 * 13 12 11 15 15 C 1.50698 * 119.96661 * 179.76291 * 14 13 12 16 16 N 1.46498 * 109.47216 * 269.72140 * 15 14 13 17 17 C 1.34773 * 120.00095 * 180.02562 * 16 15 14 18 18 O 1.21480 * 120.00151 * 359.97438 * 17 16 15 19 19 C 1.48460 * 120.00146 * 180.02562 * 17 16 15 20 20 C 1.39536 * 120.55332 * 179.97438 * 19 17 16 21 21 C 1.38756 * 118.26625 * 179.97438 * 20 19 17 22 22 N 1.32212 * 119.14580 * 0.02562 * 21 20 19 23 23 C 1.31880 * 121.03427 * 359.97438 * 22 21 20 24 24 C 1.50703 * 119.03905 * 179.97438 * 23 22 21 25 25 C 1.53008 * 117.49740 * 8.74732 * 24 23 22 26 26 C 1.52996 * 117.50015 * 300.08940 * 24 23 22 27 27 N 1.31583 * 121.92179 * 359.71338 * 23 22 21 28 28 C 1.38121 * 120.06570 * 359.48525 * 14 13 12 29 29 H 0.97001 * 120.00108 * 0.02562 * 1 2 3 30 30 H 1.08005 * 120.03058 * 0.02562 * 11 10 9 31 31 H 1.08006 * 119.96286 * 180.02562 * 12 11 10 32 32 H 1.08005 * 119.93053 * 180.27601 * 13 12 11 33 33 H 1.08997 * 109.47308 * 29.72274 * 15 14 13 34 34 H 1.09003 * 109.47279 * 149.71988 * 15 14 13 35 35 H 0.97005 * 120.00310 * 359.97438 * 16 15 14 36 36 H 1.08004 * 120.86462 * 0.02562 * 20 19 17 37 37 H 1.07998 * 120.42559 * 180.02562 * 21 20 19 38 38 H 1.08993 * 115.55029 * 154.41355 * 24 23 22 39 39 H 1.09000 * 117.49528 * 0.02562 * 25 24 23 40 40 H 1.09000 * 117.49471 * 145.01541 * 25 24 23 41 41 H 1.08999 * 117.50125 * 214.97697 * 26 24 23 42 42 H 1.09001 * 117.49914 * 359.97416 * 26 24 23 43 43 H 1.08004 * 120.03312 * 180.23431 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 2.4970 2.0464 -1.4001 5 1 1.4469 2.6528 0.7000 6 1 3.5471 1.4403 0.7001 7 6 2.0089 -1.2007 0.0005 8 1 1.4689 -2.1361 0.0014 9 8 3.3572 -1.2007 0.0011 10 6 3.9736 -2.4055 -0.1051 11 6 3.2235 -3.5745 -0.0926 12 6 3.8533 -4.7984 -0.2013 13 6 5.2293 -4.8609 -0.3278 14 6 5.9793 -3.6993 -0.3351 15 6 7.4787 -3.7722 -0.4678 16 7 8.0833 -3.8568 0.8639 17 6 9.4228 -3.9313 0.9924 18 8 10.1289 -3.9287 0.0039 19 6 10.0354 -4.0176 2.3420 20 6 11.4209 -4.0957 2.4884 21 6 11.9427 -4.1740 3.7717 22 7 11.1165 -4.1726 4.8039 23 6 9.8114 -4.0976 4.6301 24 6 8.9111 -4.1000 5.8386 25 6 9.5733 -3.9836 7.2131 26 6 8.9726 -5.3177 6.7630 27 7 9.2726 -4.0157 3.4324 28 6 5.3552 -2.4719 -0.2268 29 1 -0.4850 0.8400 -0.0004 30 1 2.1486 -3.5261 0.0012 31 1 3.2706 -5.7077 -0.1920 32 1 5.7193 -5.8193 -0.4171 33 1 7.7498 -4.6551 -1.0466 34 1 7.8424 -2.8790 -0.9758 35 1 7.5195 -3.8585 1.6534 36 1 12.0702 -4.0943 1.6253 37 1 13.0099 -4.2354 3.9253 38 1 7.9426 -3.6185 5.7043 39 1 10.6601 -3.9049 7.2430 40 1 9.0402 -3.4259 7.9829 41 1 8.0446 -5.6371 7.2370 42 1 9.6639 -6.1172 6.4967 43 1 5.9412 -1.5647 -0.2364 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001649700134.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:18 Heat of formation + Delta-G solvation = 23.739651 kcal Electronic energy + Delta-G solvation = -27224.192502 eV Core-core repulsion = 23235.621065 eV Total energy + Delta-G solvation = -3988.571437 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.43574 -41.09730 -40.50363 -38.62799 -37.94102 -36.01254 -34.97385 -34.46473 -32.92519 -32.26179 -31.01998 -28.03673 -27.21616 -26.15659 -25.94712 -23.41949 -23.24225 -23.02444 -22.25931 -21.50640 -19.81757 -19.43202 -19.01075 -18.57460 -17.06816 -16.99917 -16.87890 -16.79545 -16.59139 -16.46816 -15.90533 -15.77378 -15.63618 -15.46987 -15.13321 -14.94334 -14.68723 -14.47971 -14.22632 -13.88714 -13.51435 -13.25139 -13.13079 -12.62922 -12.50041 -12.41517 -12.41219 -12.07770 -11.98681 -11.96698 -11.90907 -11.72649 -11.38910 -11.33836 -10.93311 -10.48555 -10.41723 -10.24434 -9.82730 -9.14918 -8.51572 -6.24341 -0.67543 -0.18700 0.30205 0.62338 1.30319 1.33555 1.50008 1.53345 1.88767 2.26103 2.49429 2.54383 2.75724 2.88456 2.96522 3.10675 3.16366 3.48043 3.64582 3.70880 3.89886 3.92470 4.02898 4.10383 4.15789 4.23211 4.36978 4.46203 4.47574 4.53300 4.62931 4.67813 4.79501 4.89070 4.96250 5.10765 5.13712 5.16278 5.21205 5.31637 5.35164 5.59365 5.65754 5.70718 5.73165 5.87010 6.16468 6.27553 6.80835 6.82957 6.92627 7.56527 8.59897 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011036 B = 0.002502 C = 0.002312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2536.429065 B =11187.246050 C =12108.416228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.012 3.988 3 Si 0.967 3.033 4 H -0.266 1.266 5 H -0.267 1.267 6 H -0.264 1.264 7 C -0.399 4.399 8 H 0.084 0.916 9 O -0.245 6.245 10 C 0.120 3.880 11 C -0.226 4.226 12 C -0.074 4.074 13 C -0.158 4.158 14 C -0.064 4.064 15 C 0.171 3.829 16 N -0.693 5.693 17 C 0.570 3.430 18 O -0.552 6.552 19 C 0.116 3.884 20 C -0.175 4.175 21 C 0.163 3.837 22 N -0.511 5.511 23 C 0.339 3.661 24 C -0.128 4.128 25 C -0.141 4.141 26 C -0.145 4.145 27 N -0.509 5.509 28 C -0.170 4.170 29 H 0.285 0.715 30 H 0.111 0.889 31 H 0.145 0.855 32 H 0.149 0.851 33 H 0.097 0.903 34 H 0.078 0.922 35 H 0.416 0.584 36 H 0.176 0.824 37 H 0.221 0.779 38 H 0.129 0.871 39 H 0.106 0.894 40 H 0.117 0.883 41 H 0.119 0.881 42 H 0.092 0.908 43 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.157 -11.633 10.466 28.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.186 4.186 3 Si 0.790 3.210 4 H -0.191 1.191 5 H -0.192 1.192 6 H -0.189 1.189 7 C -0.475 4.475 8 H 0.102 0.898 9 O -0.152 6.152 10 C 0.071 3.929 11 C -0.245 4.245 12 C -0.091 4.091 13 C -0.177 4.177 14 C -0.065 4.065 15 C 0.048 3.952 16 N -0.344 5.344 17 C 0.354 3.646 18 O -0.429 6.429 19 C -0.031 4.031 20 C -0.197 4.197 21 C -0.004 4.004 22 N -0.225 5.225 23 C 0.072 3.928 24 C -0.148 4.148 25 C -0.178 4.178 26 C -0.183 4.183 27 N -0.225 5.225 28 C -0.189 4.189 29 H 0.094 0.906 30 H 0.129 0.871 31 H 0.163 0.837 32 H 0.167 0.833 33 H 0.115 0.885 34 H 0.097 0.903 35 H 0.253 0.747 36 H 0.193 0.807 37 H 0.238 0.762 38 H 0.146 0.854 39 H 0.125 0.875 40 H 0.135 0.865 41 H 0.137 0.863 42 H 0.111 0.889 43 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 23.912 -11.270 10.483 28.437 hybrid contribution -0.496 0.826 -0.702 1.192 sum 23.415 -10.444 9.780 27.441 Atomic orbital electron populations 1.69720 1.06838 1.29595 1.50100 1.25232 0.95828 1.02016 0.95571 0.85266 0.78795 0.77715 0.79250 1.19145 1.19197 1.18882 1.20711 0.78003 0.96174 1.52586 0.89832 1.83521 1.21312 1.27371 1.83042 1.19555 0.92884 0.85273 0.95210 1.21416 1.00470 0.93237 1.09425 1.21147 0.95164 0.96473 0.96362 1.21044 0.93248 0.98183 1.05202 1.19434 0.94506 0.92117 1.00419 1.20238 0.87279 1.03884 0.83769 1.45959 1.06213 1.71642 1.10548 1.17980 0.82558 0.76921 0.87135 1.90780 1.62168 1.51528 1.38450 1.21594 0.92531 0.96558 0.92410 1.23210 0.95149 0.99305 1.02072 1.24074 1.02310 0.87910 0.86110 1.68155 1.04479 1.13349 1.36515 1.22460 0.88706 0.90402 0.91183 1.20793 0.99282 1.07792 0.86916 1.23103 1.01648 0.99531 0.93528 1.23065 1.03912 0.91105 1.00219 1.68032 1.41608 1.13790 0.99119 1.20277 0.90701 0.98826 1.09133 0.90553 0.87068 0.83714 0.83284 0.88531 0.90327 0.74669 0.80654 0.76236 0.85357 0.87530 0.86494 0.86313 0.88931 0.85953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.63 13.96 21.61 0.30 -54.32 16 2 C 0.01 0.70 5.49 84.83 0.47 1.16 16 3 Si 0.97 45.29 28.62 68.60 1.96 47.25 16 4 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 5 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 6 H -0.26 -12.41 7.11 99.48 0.71 -11.71 16 7 C -0.40 -23.13 9.95 67.92 0.68 -22.46 16 8 H 0.08 5.05 5.44 -2.91 -0.02 5.03 16 9 O -0.24 -13.09 8.59 -22.71 -0.19 -13.28 16 10 C 0.12 5.42 6.65 22.58 0.15 5.57 16 11 C -0.23 -9.45 9.17 22.39 0.21 -9.24 16 12 C -0.07 -2.33 10.04 22.25 0.22 -2.11 16 13 C -0.16 -4.33 9.70 22.30 0.22 -4.11 16 14 C -0.06 -1.88 5.25 -19.88 -0.10 -1.98 16 15 C 0.17 4.18 5.80 85.63 0.50 4.68 16 16 N -0.69 -16.96 5.54 -469.12 -2.60 -19.56 16 17 C 0.57 14.46 7.83 86.97 0.68 15.14 16 18 O -0.55 -16.09 16.43 -3.65 -0.06 -16.15 16 19 C 0.12 2.61 6.79 42.00 0.29 2.89 16 20 C -0.17 -2.86 9.72 22.71 0.22 -2.64 16 21 C 0.16 2.10 11.31 84.76 0.96 3.06 16 22 N -0.51 -9.02 9.33 -187.89 -1.75 -10.78 16 23 C 0.34 7.05 7.31 138.79 1.01 8.06 16 24 C -0.13 -2.18 6.23 -11.54 -0.07 -2.25 16 25 C -0.14 -1.77 10.01 30.62 0.31 -1.46 16 26 C -0.14 -1.87 10.24 30.62 0.31 -1.55 16 27 N -0.51 -11.88 9.60 -177.07 -1.70 -13.58 16 28 C -0.17 -6.28 9.65 22.39 0.22 -6.06 16 29 H 0.28 15.49 8.31 -92.71 -0.77 14.72 16 30 H 0.11 5.13 5.64 -2.91 -0.02 5.12 16 31 H 0.15 3.67 8.06 -2.91 -0.02 3.65 16 32 H 0.15 3.06 8.06 -2.91 -0.02 3.04 16 33 H 0.10 2.09 8.08 -2.39 -0.02 2.08 16 34 H 0.08 1.98 8.08 -2.39 -0.02 1.96 16 35 H 0.42 10.21 7.85 -92.70 -0.73 9.49 16 36 H 0.18 2.30 7.74 -2.91 -0.02 2.28 16 37 H 0.22 0.76 8.06 -2.91 -0.02 0.74 16 38 H 0.13 2.24 8.14 -2.39 -0.02 2.22 16 39 H 0.11 1.42 7.54 -2.39 -0.02 1.40 16 40 H 0.12 1.11 8.14 -2.39 -0.02 1.09 16 41 H 0.12 1.18 8.14 -2.39 -0.02 1.16 16 42 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 43 H 0.12 4.37 8.06 -2.91 -0.02 4.34 16 Total: -1.00 -70.76 377.97 2.55 -68.21 By element: Atomic # 1 Polarization: 25.18 SS G_CDS: 0.34 Total: 25.52 kcal Atomic # 6 Polarization: -19.56 SS G_CDS: 6.25 Total: -13.31 kcal Atomic # 7 Polarization: -92.49 SS G_CDS: -5.75 Total: -98.24 kcal Atomic # 8 Polarization: -29.18 SS G_CDS: -0.25 Total: -29.43 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 1.96 Total: 47.25 kcal Total: -70.76 2.55 -68.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649700134.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.948 kcal (2) G-P(sol) polarization free energy of solvation -70.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.208 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds