Wall clock time and date at job start Sat Apr 11 2020 05:38:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 S 1.70446 * 124.59404 * 2 1 4 4 C 1.75509 * 92.44488 * 180.02562 * 3 2 1 5 5 C 1.32774 * 110.57524 * 359.74068 * 4 3 2 6 6 C 1.36017 * 124.58819 * 180.02562 * 2 1 3 7 7 C 1.47186 * 123.45956 * 359.92966 * 6 2 1 8 8 O 1.21633 * 120.00401 * 0.02562 * 7 6 2 9 9 N 1.34780 * 119.99763 * 180.02562 * 7 6 2 10 10 C 1.46494 * 120.00059 * 179.97438 * 9 7 6 11 11 C 1.53004 * 109.47501 * 179.97438 * 10 9 7 12 12 H 1.08999 * 109.47268 * 305.00906 * 11 10 9 13 13 C 1.53009 * 109.46678 * 65.00107 * 11 10 9 14 14 C 1.52993 * 109.47435 * 185.00167 * 11 10 9 15 15 N 1.46905 * 109.47039 * 175.00361 * 14 11 10 16 16 C 1.46901 * 110.99870 * 180.02562 * 15 14 11 17 17 C 1.50697 * 109.46943 * 180.02562 * 16 15 14 18 18 O 1.21292 * 120.00024 * 359.97438 * 17 16 15 19 19 N 1.34776 * 119.99767 * 180.02562 * 17 16 15 20 20 C 1.37097 * 119.99759 * 179.97438 * 19 17 16 21 21 H 1.08000 * 120.00171 * 359.97438 * 20 19 17 22 22 C 1.38951 * 120.00074 * 179.97438 * 20 19 17 23 23 N 1.31416 * 119.99768 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00310 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.47191 * 60.00175 * 24 22 20 26 26 H 1.48495 * 109.47229 * 180.02562 * 24 22 20 27 27 H 1.48502 * 109.47299 * 300.00478 * 24 22 20 28 28 H 1.09005 * 109.46899 * 269.95340 * 1 2 3 29 29 H 1.08995 * 109.47291 * 29.94977 * 1 2 3 30 30 H 1.08994 * 109.47228 * 149.95719 * 1 2 3 31 31 H 1.07997 * 124.70972 * 180.02562 * 4 3 2 32 32 H 1.08000 * 123.45304 * 180.24711 * 5 4 3 33 33 H 0.97000 * 119.99981 * 0.02562 * 9 7 6 34 34 H 1.09001 * 109.47033 * 60.00141 * 10 9 7 35 35 H 1.09003 * 109.47588 * 300.00243 * 10 9 7 36 36 H 1.08995 * 109.47462 * 300.00645 * 13 11 10 37 37 H 1.08999 * 109.46618 * 60.00401 * 13 11 10 38 38 H 1.08995 * 109.46725 * 179.97438 * 13 11 10 39 39 H 1.09001 * 109.47393 * 55.00642 * 14 11 10 40 40 H 1.08998 * 109.47408 * 295.00288 * 14 11 10 41 41 H 1.00901 * 110.99869 * 56.04956 * 15 14 11 42 42 H 1.09004 * 109.47031 * 299.99620 * 16 15 14 43 43 H 1.08995 * 109.47111 * 59.99900 * 16 15 14 44 44 H 0.96997 * 120.00713 * 359.97438 * 19 17 16 45 45 H 0.96999 * 119.99907 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.4747 1.4031 0.0000 4 6 3.9607 0.4692 -0.0008 5 6 3.6943 -0.8316 0.0046 6 6 2.2791 -1.1198 -0.0005 7 6 1.7289 -2.4849 0.0004 8 8 0.5245 -2.6553 0.0012 9 7 2.5596 -3.5463 0.0003 10 6 2.0120 -4.9050 0.0018 11 6 3.1593 -5.9173 0.0008 12 1 3.8207 -5.7161 -0.8419 13 6 3.9468 -5.7969 1.3071 14 6 2.5909 -7.3323 -0.1235 15 7 3.6944 -8.2944 -0.2448 16 6 3.1852 -9.6669 -0.3669 17 6 4.3433 -10.6234 -0.4884 18 8 5.4810 -10.2031 -0.4750 19 7 4.1149 -11.9458 -0.6129 20 6 5.1685 -12.8160 -0.7240 21 1 6.1815 -12.4417 -0.7120 22 6 4.9331 -14.1794 -0.8518 23 7 3.7004 -14.6347 -0.8668 24 14 6.3686 -15.3650 -1.0038 25 1 7.2266 -15.2608 0.2038 26 1 5.8538 -16.7523 -1.1277 27 1 7.1667 -15.0241 -2.2089 28 1 -0.3633 -0.0008 1.0277 29 1 -0.3633 0.8904 -0.5130 30 1 -0.3633 -0.8895 -0.5145 31 1 4.9538 0.8936 -0.0006 32 1 4.4576 -1.5956 0.0091 33 1 3.5200 -3.4104 0.0001 34 1 1.3988 -5.0506 -0.8875 35 1 1.4004 -5.0494 0.8924 36 1 4.3517 -4.7888 1.3957 37 1 3.2854 -5.9981 2.1498 38 1 4.7638 -6.5184 1.3066 39 1 1.9571 -7.3930 -1.0082 40 1 2.0009 -7.5660 0.7627 41 1 4.3323 -8.2129 0.5328 42 1 2.5991 -9.9171 0.5174 43 1 2.5558 -9.7433 -1.2535 44 1 3.2051 -12.2820 -0.6240 45 1 3.5360 -15.5865 -0.9564 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001666546959.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:30 Heat of formation + Delta-G solvation = -53.804243 kcal Electronic energy + Delta-G solvation = -25504.102356 eV Core-core repulsion = 21647.612314 eV Total energy + Delta-G solvation = -3856.490042 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.30684 -38.43805 -37.65597 -36.93098 -34.96505 -33.87396 -32.53893 -32.07027 -31.18813 -28.16941 -27.40714 -26.52918 -24.94691 -23.84908 -22.88284 -21.84149 -20.58085 -19.61385 -19.13756 -17.88906 -17.68524 -17.04728 -16.51020 -15.88871 -15.78606 -15.50498 -15.02039 -14.69395 -14.48479 -14.32026 -13.98275 -13.86485 -13.71806 -13.66521 -13.40781 -13.03821 -12.97550 -12.77007 -12.61807 -12.46621 -12.06190 -11.97588 -11.58664 -11.54065 -11.47601 -11.19195 -11.05754 -10.96531 -10.89728 -10.44205 -10.21263 -10.02032 -9.49915 -9.39328 -9.18744 -8.85846 -8.46358 -8.06435 -7.95729 -6.41395 -3.82369 0.39613 1.05777 1.46616 1.57709 2.98587 3.07369 3.20245 3.25994 3.30354 3.91151 4.09583 4.24094 4.31015 4.46327 4.66281 4.71171 4.78609 4.86223 4.92429 5.13499 5.13745 5.25729 5.26248 5.35805 5.43389 5.45389 5.53811 5.57408 5.61376 5.72275 5.79652 5.81698 5.84180 5.88717 5.99018 6.06641 6.13531 6.24073 6.27644 7.20410 7.23396 7.55132 7.65865 7.96462 8.06301 8.61503 9.17883 9.54549 10.05982 10.76223 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.036750 B = 0.001460 C = 0.001417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.730845 B =19172.386841 C =19752.237254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.137 4.137 3 S 0.176 5.824 4 C -0.235 4.235 5 C -0.105 4.105 6 C -0.178 4.178 7 C 0.579 3.421 8 O -0.538 6.538 9 N -0.720 5.720 10 C 0.126 3.874 11 C -0.102 4.102 12 H 0.089 0.911 13 C -0.153 4.153 14 C 0.066 3.934 15 N -0.668 5.668 16 C 0.050 3.950 17 C 0.440 3.560 18 O -0.584 6.584 19 N -0.563 5.563 20 C -0.301 4.301 21 H 0.102 0.898 22 C 0.023 3.977 23 N -0.902 5.902 24 Si 0.931 3.069 25 H -0.274 1.274 26 H -0.284 1.284 27 H -0.273 1.273 28 H 0.080 0.920 29 H 0.066 0.934 30 H 0.105 0.895 31 H 0.169 0.831 32 H 0.148 0.852 33 H 0.400 0.600 34 H 0.071 0.929 35 H 0.069 0.931 36 H 0.053 0.947 37 H 0.055 0.945 38 H 0.067 0.933 39 H 0.074 0.926 40 H 0.030 0.970 41 H 0.349 0.651 42 H 0.043 0.957 43 H 0.086 0.914 44 H 0.392 0.608 45 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.491 30.919 3.373 31.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.258 4.258 3 S 0.442 5.558 4 C -0.369 4.369 5 C -0.134 4.134 6 C -0.195 4.195 7 C 0.366 3.634 8 O -0.417 6.417 9 N -0.372 5.372 10 C 0.002 3.998 11 C -0.121 4.121 12 H 0.107 0.893 13 C -0.210 4.210 14 C -0.064 4.064 15 N -0.302 5.302 16 C -0.082 4.082 17 C 0.226 3.774 18 O -0.469 6.469 19 N -0.200 5.200 20 C -0.430 4.430 21 H 0.120 0.880 22 C -0.179 4.179 23 N -0.543 5.543 24 Si 0.758 3.242 25 H -0.199 1.199 26 H -0.210 1.210 27 H -0.199 1.199 28 H 0.099 0.901 29 H 0.085 0.915 30 H 0.123 0.877 31 H 0.187 0.813 32 H 0.166 0.834 33 H 0.236 0.764 34 H 0.089 0.911 35 H 0.088 0.912 36 H 0.072 0.928 37 H 0.074 0.926 38 H 0.086 0.914 39 H 0.093 0.907 40 H 0.048 0.952 41 H 0.169 0.831 42 H 0.061 0.939 43 H 0.105 0.895 44 H 0.226 0.774 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -5.870 32.464 2.691 33.100 hybrid contribution 0.722 -2.586 0.813 2.805 sum -5.148 29.878 3.504 30.520 Atomic orbital electron populations 1.20657 0.86661 1.04471 1.03675 1.24576 1.01925 0.96848 1.02436 1.83134 0.95072 1.07424 1.70210 1.25417 1.02386 0.97233 1.11903 1.21226 0.94497 0.96451 1.01268 1.20144 0.92758 0.93695 1.12901 1.17536 0.86076 0.83686 0.76148 1.90738 1.14454 1.86120 1.50414 1.45855 1.10091 1.05919 1.75348 1.21398 0.95984 0.79785 1.02627 1.21369 0.96769 0.94190 0.99774 0.89267 1.21904 1.00625 1.01875 0.96594 1.21877 0.93276 0.90667 1.00572 1.60089 1.16275 1.03077 1.50750 1.21671 0.96649 0.88660 1.01266 1.19811 0.89900 0.83164 0.84538 1.90515 1.23171 1.77351 1.55836 1.41857 1.09755 1.04656 1.63711 1.19660 0.89208 0.87051 1.47123 0.87972 1.25265 0.97620 0.97721 0.97305 1.69607 1.19090 1.15373 1.50216 0.85910 0.80554 0.78628 0.79067 1.19934 1.20978 1.19892 0.90150 0.91519 0.87654 0.81323 0.83406 0.76440 0.91070 0.91248 0.92804 0.92611 0.91379 0.90735 0.95154 0.83072 0.93858 0.89542 0.77436 0.91818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.77 9.60 36.01 0.35 -0.42 16 2 C -0.14 -1.17 6.34 -35.11 -0.22 -1.40 16 3 S 0.18 1.08 22.97 -107.50 -2.47 -1.39 16 4 C -0.23 -1.38 11.12 28.86 0.32 -1.06 16 5 C -0.11 -0.72 9.91 -39.02 -0.39 -1.11 16 6 C -0.18 -1.64 5.98 -104.63 -0.63 -2.27 16 7 C 0.58 6.31 7.79 -12.63 -0.10 6.22 16 8 O -0.54 -7.40 14.06 5.25 0.07 -7.32 16 9 N -0.72 -6.38 5.26 -61.46 -0.32 -6.71 16 10 C 0.13 1.19 5.06 -4.04 -0.02 1.17 16 11 C -0.10 -0.98 2.63 -90.62 -0.24 -1.22 16 12 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 13 C -0.15 -1.38 8.84 37.16 0.33 -1.05 16 14 C 0.07 0.78 5.14 -3.82 -0.02 0.76 16 15 N -0.67 -10.50 6.12 -115.06 -0.70 -11.21 16 16 C 0.05 0.88 6.17 -4.98 -0.03 0.85 16 17 C 0.44 10.41 7.82 -10.99 -0.09 10.33 16 18 O -0.58 -15.84 15.78 5.55 0.09 -15.75 16 19 N -0.56 -14.32 5.29 -10.96 -0.06 -14.38 16 20 C -0.30 -8.42 9.68 -14.93 -0.14 -8.56 16 21 H 0.10 2.99 7.16 -52.49 -0.38 2.61 16 22 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 23 N -0.90 -24.55 13.05 55.50 0.72 -23.83 16 24 Si 0.93 21.06 29.55 -169.99 -5.02 16.04 16 25 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 26 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 27 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 28 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.11 1.06 5.94 -51.93 -0.31 0.75 16 31 H 0.17 0.59 8.06 -52.49 -0.42 0.17 16 32 H 0.15 0.70 7.10 -52.49 -0.37 0.32 16 33 H 0.40 2.69 6.20 -40.82 -0.25 2.44 16 34 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 36 H 0.05 0.40 7.18 -51.93 -0.37 0.03 16 37 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.07 0.71 6.68 -51.93 -0.35 0.36 16 39 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.03 0.34 8.14 -51.93 -0.42 -0.09 16 41 H 0.35 5.62 6.68 -39.29 -0.26 5.35 16 42 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 44 H 0.39 9.53 7.90 -40.82 -0.32 9.21 16 45 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 LS Contribution 387.60 15.07 5.84 5.84 Total: -1.00 -33.28 387.60 -9.23 -42.51 By element: Atomic # 1 Polarization: 19.86 SS G_CDS: -6.40 Total: 13.46 kcal Atomic # 6 Polarization: 3.72 SS G_CDS: -0.97 Total: 2.74 kcal Atomic # 7 Polarization: -55.76 SS G_CDS: -0.36 Total: -56.12 kcal Atomic # 8 Polarization: -23.24 SS G_CDS: 0.16 Total: -23.08 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Atomic # 16 Polarization: 1.08 SS G_CDS: -2.47 Total: -1.39 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -33.28 -9.23 -42.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001666546959.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.299 kcal (2) G-P(sol) polarization free energy of solvation -33.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds