Wall clock time and date at job start Sat Apr 11 2020 05:38:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 S 1.70446 * 124.59404 * 2 1 4 4 C 1.75509 * 92.44488 * 180.02562 * 3 2 1 5 5 C 1.32774 * 110.57524 * 359.74068 * 4 3 2 6 6 C 1.36017 * 124.58819 * 180.02562 * 2 1 3 7 7 C 1.47186 * 123.45956 * 359.92966 * 6 2 1 8 8 O 1.21633 * 120.00401 * 0.02562 * 7 6 2 9 9 N 1.34780 * 119.99763 * 180.02562 * 7 6 2 10 10 C 1.46494 * 120.00059 * 179.97438 * 9 7 6 11 11 C 1.53004 * 109.47501 * 179.97438 * 10 9 7 12 12 H 1.08999 * 109.47268 * 305.00906 * 11 10 9 13 13 C 1.53009 * 109.46678 * 65.00107 * 11 10 9 14 14 C 1.52993 * 109.47435 * 185.00167 * 11 10 9 15 15 N 1.46905 * 109.47039 * 175.00361 * 14 11 10 16 16 C 1.46901 * 110.99870 * 180.02562 * 15 14 11 17 17 C 1.50697 * 109.46943 * 180.02562 * 16 15 14 18 18 O 1.21292 * 120.00024 * 359.97438 * 17 16 15 19 19 N 1.34776 * 119.99767 * 180.02562 * 17 16 15 20 20 C 1.37097 * 119.99759 * 179.97438 * 19 17 16 21 21 H 1.08000 * 120.00171 * 359.97438 * 20 19 17 22 22 C 1.38951 * 120.00074 * 179.97438 * 20 19 17 23 23 N 1.31416 * 119.99768 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00310 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.47191 * 60.00175 * 24 22 20 26 26 H 1.48495 * 109.47229 * 180.02562 * 24 22 20 27 27 H 1.48502 * 109.47299 * 300.00478 * 24 22 20 28 28 H 1.09005 * 109.46899 * 269.95340 * 1 2 3 29 29 H 1.08995 * 109.47291 * 29.94977 * 1 2 3 30 30 H 1.08994 * 109.47228 * 149.95719 * 1 2 3 31 31 H 1.07997 * 124.70972 * 180.02562 * 4 3 2 32 32 H 1.08000 * 123.45304 * 180.24711 * 5 4 3 33 33 H 0.97000 * 119.99981 * 0.02562 * 9 7 6 34 34 H 1.09001 * 109.47033 * 60.00141 * 10 9 7 35 35 H 1.09003 * 109.47588 * 300.00243 * 10 9 7 36 36 H 1.08995 * 109.47462 * 300.00645 * 13 11 10 37 37 H 1.08999 * 109.46618 * 60.00401 * 13 11 10 38 38 H 1.08995 * 109.46725 * 179.97438 * 13 11 10 39 39 H 1.09001 * 109.47393 * 55.00642 * 14 11 10 40 40 H 1.08998 * 109.47408 * 295.00288 * 14 11 10 41 41 H 1.00901 * 110.99869 * 56.04956 * 15 14 11 42 42 H 1.09004 * 109.47031 * 299.99620 * 16 15 14 43 43 H 1.08995 * 109.47111 * 59.99900 * 16 15 14 44 44 H 0.96997 * 120.00713 * 359.97438 * 19 17 16 45 45 H 0.96999 * 119.99907 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.4747 1.4031 0.0000 4 6 3.9607 0.4692 -0.0008 5 6 3.6943 -0.8316 0.0046 6 6 2.2791 -1.1198 -0.0005 7 6 1.7289 -2.4849 0.0004 8 8 0.5245 -2.6553 0.0012 9 7 2.5596 -3.5463 0.0003 10 6 2.0120 -4.9050 0.0018 11 6 3.1593 -5.9173 0.0008 12 1 3.8207 -5.7161 -0.8419 13 6 3.9468 -5.7969 1.3071 14 6 2.5909 -7.3323 -0.1235 15 7 3.6944 -8.2944 -0.2448 16 6 3.1852 -9.6669 -0.3669 17 6 4.3433 -10.6234 -0.4884 18 8 5.4810 -10.2031 -0.4750 19 7 4.1149 -11.9458 -0.6129 20 6 5.1685 -12.8160 -0.7240 21 1 6.1815 -12.4417 -0.7120 22 6 4.9331 -14.1794 -0.8518 23 7 3.7004 -14.6347 -0.8668 24 14 6.3686 -15.3650 -1.0038 25 1 7.2266 -15.2608 0.2038 26 1 5.8538 -16.7523 -1.1277 27 1 7.1667 -15.0241 -2.2089 28 1 -0.3633 -0.0008 1.0277 29 1 -0.3633 0.8904 -0.5130 30 1 -0.3633 -0.8895 -0.5145 31 1 4.9538 0.8936 -0.0006 32 1 4.4576 -1.5956 0.0091 33 1 3.5200 -3.4104 0.0001 34 1 1.3988 -5.0506 -0.8875 35 1 1.4004 -5.0494 0.8924 36 1 4.3517 -4.7888 1.3957 37 1 3.2854 -5.9981 2.1498 38 1 4.7638 -6.5184 1.3066 39 1 1.9571 -7.3930 -1.0082 40 1 2.0009 -7.5660 0.7627 41 1 4.3323 -8.2129 0.5328 42 1 2.5991 -9.9171 0.5174 43 1 2.5558 -9.7433 -1.2535 44 1 3.2051 -12.2820 -0.6240 45 1 3.5360 -15.5865 -0.9564 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001666546959.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:29 Heat of formation + Delta-G solvation = -77.952404 kcal Electronic energy + Delta-G solvation = -25505.149499 eV Core-core repulsion = 21647.612314 eV Total energy + Delta-G solvation = -3857.537185 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.07288 -40.17669 -38.57028 -37.73431 -36.20491 -35.68533 -33.51774 -33.17208 -32.73308 -29.06353 -28.55884 -27.38839 -26.46125 -24.92246 -23.78878 -22.51865 -21.44020 -21.06435 -20.23028 -19.87581 -18.26312 -17.90375 -17.67569 -17.18046 -16.72114 -16.60110 -16.40441 -16.03689 -15.68035 -15.46360 -15.28328 -14.83948 -14.60167 -14.45339 -14.36002 -14.21997 -13.91444 -13.60643 -13.55337 -13.44945 -13.31798 -13.07800 -13.02851 -12.78823 -12.56638 -12.43105 -12.13145 -12.06139 -11.97603 -11.84924 -11.75729 -11.49730 -10.83443 -10.34456 -10.17541 -10.01606 -9.72504 -9.38386 -9.32288 -8.46238 -5.95309 -0.19607 0.55021 0.96789 1.01032 1.40379 1.42316 1.53354 2.05327 2.21861 2.31045 2.33580 2.96373 3.20993 3.53693 3.72002 3.80992 3.90588 3.94981 3.99183 4.18172 4.33190 4.40515 4.47505 4.52533 4.57727 4.58722 4.63221 4.65301 4.74423 4.79399 4.94939 4.97360 5.01300 5.05907 5.19084 5.28958 5.30795 5.35897 5.40927 5.48108 5.88693 6.10063 6.42073 6.52708 6.60155 7.12459 7.20422 7.56276 8.11296 8.70832 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.036750 B = 0.001460 C = 0.001417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.730845 B =19172.386841 C =19752.237254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.161 4.161 3 S 0.214 5.786 4 C -0.232 4.232 5 C -0.115 4.115 6 C -0.199 4.199 7 C 0.573 3.427 8 O -0.576 6.576 9 N -0.710 5.710 10 C 0.133 3.867 11 C -0.088 4.088 12 H 0.086 0.914 13 C -0.150 4.150 14 C 0.066 3.934 15 N -0.681 5.681 16 C 0.063 3.937 17 C 0.437 3.563 18 O -0.623 6.623 19 N -0.573 5.573 20 C -0.336 4.336 21 H 0.080 0.920 22 C -0.013 4.013 23 N -0.920 5.920 24 Si 0.994 3.006 25 H -0.271 1.271 26 H -0.271 1.271 27 H -0.272 1.272 28 H 0.080 0.920 29 H 0.085 0.915 30 H 0.080 0.920 31 H 0.196 0.804 32 H 0.168 0.832 33 H 0.412 0.588 34 H 0.064 0.936 35 H 0.065 0.935 36 H 0.071 0.929 37 H 0.056 0.944 38 H 0.054 0.946 39 H 0.079 0.921 40 H 0.041 0.959 41 H 0.345 0.655 42 H 0.066 0.934 43 H 0.104 0.896 44 H 0.396 0.604 45 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.898 32.127 3.555 32.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.282 4.282 3 S 0.479 5.521 4 C -0.367 4.367 5 C -0.143 4.143 6 C -0.216 4.216 7 C 0.361 3.639 8 O -0.457 6.457 9 N -0.362 5.362 10 C 0.009 3.991 11 C -0.108 4.108 12 H 0.104 0.896 13 C -0.208 4.208 14 C -0.063 4.063 15 N -0.314 5.314 16 C -0.069 4.069 17 C 0.225 3.775 18 O -0.509 6.509 19 N -0.210 5.210 20 C -0.466 4.466 21 H 0.098 0.902 22 C -0.213 4.213 23 N -0.561 5.561 24 Si 0.818 3.182 25 H -0.196 1.196 26 H -0.195 1.195 27 H -0.197 1.197 28 H 0.098 0.902 29 H 0.103 0.897 30 H 0.099 0.901 31 H 0.213 0.787 32 H 0.185 0.815 33 H 0.249 0.751 34 H 0.082 0.918 35 H 0.083 0.917 36 H 0.090 0.910 37 H 0.075 0.925 38 H 0.073 0.927 39 H 0.098 0.902 40 H 0.060 0.940 41 H 0.165 0.835 42 H 0.084 0.916 43 H 0.122 0.878 44 H 0.230 0.770 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -5.280 33.684 2.873 34.216 hybrid contribution 0.527 -2.848 0.758 2.994 sum -4.753 30.836 3.631 31.411 Atomic orbital electron populations 1.20592 0.86923 1.04167 1.03574 1.24825 1.02414 0.98172 1.02767 1.82986 0.94476 1.05708 1.68892 1.25812 1.03480 0.96938 1.10442 1.21385 0.93661 0.97527 1.01767 1.20234 0.94168 0.92837 1.14346 1.17903 0.85759 0.84721 0.75550 1.90718 1.16001 1.86748 1.52282 1.45756 1.10594 1.05317 1.74539 1.21251 0.95699 0.80048 1.02088 1.21208 0.96579 0.92938 1.00037 0.89575 1.21882 1.00104 1.02586 0.96187 1.21959 0.92328 0.90685 1.01332 1.60089 1.17733 1.02621 1.51004 1.21539 0.94100 0.88211 1.03050 1.20876 0.91095 0.83256 0.82308 1.90482 1.25441 1.77993 1.57030 1.41933 1.09383 1.05298 1.64399 1.19655 0.89113 0.88355 1.49479 0.90229 1.26053 1.00292 0.98652 0.96253 1.69671 1.20448 1.16024 1.49940 0.84974 0.77489 0.76847 0.78932 1.19628 1.19518 1.19749 0.90171 0.89672 0.90102 0.78677 0.81511 0.75084 0.91814 0.91681 0.91019 0.92451 0.92713 0.90240 0.94040 0.83476 0.91625 0.87841 0.76978 0.91298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.53 9.60 71.24 0.68 -0.85 16 2 C -0.16 -2.66 6.34 25.17 0.16 -2.50 16 3 S 0.21 2.21 22.97 -56.49 -1.30 0.91 16 4 C -0.23 -2.11 11.12 66.64 0.74 -1.37 16 5 C -0.12 -1.36 9.91 22.67 0.22 -1.13 16 6 C -0.20 -3.53 5.98 -19.87 -0.12 -3.64 16 7 C 0.57 12.49 7.79 86.59 0.67 13.16 16 8 O -0.58 -16.36 14.06 -4.14 -0.06 -16.42 16 9 N -0.71 -12.00 5.26 -466.60 -2.46 -14.45 16 10 C 0.13 2.42 5.06 86.38 0.44 2.85 16 11 C -0.09 -1.59 2.63 -10.79 -0.03 -1.62 16 12 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 13 C -0.15 -2.51 8.84 71.99 0.64 -1.87 16 14 C 0.07 1.45 5.14 86.30 0.44 1.90 16 15 N -0.68 -20.72 6.12 -517.93 -3.17 -23.89 16 16 C 0.06 2.16 6.17 85.56 0.53 2.69 16 17 C 0.44 20.80 7.82 87.66 0.69 21.49 16 18 O -0.62 -34.40 15.78 -3.07 -0.05 -34.45 16 19 N -0.57 -29.51 5.29 -306.99 -1.62 -31.13 16 20 C -0.34 -19.17 9.68 84.04 0.81 -18.36 16 21 H 0.08 4.81 7.16 -2.91 -0.02 4.79 16 22 C -0.01 -0.68 5.50 84.93 0.47 -0.21 16 23 N -0.92 -49.74 13.05 21.66 0.28 -49.46 16 24 Si 0.99 42.89 29.55 68.60 2.03 44.92 16 25 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16 26 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 27 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 28 H 0.08 1.24 8.14 -2.38 -0.02 1.22 16 29 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.08 1.73 5.94 -2.39 -0.01 1.72 16 31 H 0.20 0.66 8.06 -2.91 -0.02 0.64 16 32 H 0.17 1.16 7.10 -2.91 -0.02 1.14 16 33 H 0.41 4.91 6.20 -92.71 -0.57 4.33 16 34 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 35 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.07 0.93 7.18 -2.39 -0.02 0.91 16 37 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.05 1.09 6.68 -2.39 -0.02 1.07 16 39 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 40 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 41 H 0.35 10.93 6.68 -89.69 -0.60 10.34 16 42 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 43 H 0.10 3.20 8.14 -2.39 -0.02 3.18 16 44 H 0.40 19.38 7.90 -92.71 -0.73 18.65 16 45 H 0.28 14.08 8.31 -92.71 -0.77 13.31 16 Total: -1.00 -72.86 387.60 -0.86 -73.71 By element: Atomic # 1 Polarization: 40.57 SS G_CDS: -0.86 Total: 39.71 kcal Atomic # 6 Polarization: 4.19 SS G_CDS: 6.35 Total: 10.54 kcal Atomic # 7 Polarization: -111.96 SS G_CDS: -6.97 Total: -118.93 kcal Atomic # 8 Polarization: -50.76 SS G_CDS: -0.11 Total: -50.86 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 2.03 Total: 44.92 kcal Atomic # 16 Polarization: 2.21 SS G_CDS: -1.30 Total: 0.91 kcal Total: -72.86 -0.86 -73.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001666546959.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.238 kcal (2) G-P(sol) polarization free energy of solvation -72.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds