Wall clock time and date at job start Sat Apr 11 2020 05:38:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.34665 * 125.79958 * 2 1 4 4 H 0.96998 * 124.85140 * 0.02562 * 3 2 1 5 5 C 1.36445 * 110.29433 * 180.29220 * 3 2 1 6 6 C 1.34495 * 108.85702 * 359.74713 * 5 3 2 7 7 C 1.36764 * 125.80125 * 179.85951 * 2 1 3 8 8 C 1.47269 * 126.94244 * 359.97438 * 7 2 1 9 9 O 1.21620 * 119.99945 * 359.70156 * 8 7 2 10 10 N 1.34771 * 119.99688 * 179.70841 * 8 7 2 11 11 C 1.46505 * 119.99622 * 179.97438 * 10 8 7 12 12 C 1.52997 * 109.47212 * 179.97438 * 11 10 8 13 13 H 1.09000 * 109.47325 * 294.99862 * 12 11 10 14 14 C 1.52994 * 109.47404 * 174.99693 * 12 11 10 15 15 N 1.46500 * 109.47170 * 54.99826 * 12 11 10 16 16 C 1.46497 * 120.00196 * 59.99800 * 15 12 11 17 17 C 1.34780 * 119.99989 * 240.00296 * 15 12 11 18 18 O 1.21273 * 120.00005 * 359.97438 * 17 15 12 19 19 C 1.50708 * 119.99880 * 179.97438 * 17 15 12 20 20 S 1.80991 * 109.47022 * 179.97438 * 19 17 15 21 21 C 1.76201 * 100.00269 * 179.97438 * 20 19 17 22 22 H 1.08002 * 119.99510 * 0.02562 * 21 20 19 23 23 C 1.38798 * 120.00561 * 180.02562 * 21 20 19 24 24 N 1.31627 * 119.99936 * 180.02562 * 23 21 20 25 25 Si 1.86798 * 119.99777 * 359.97438 * 23 21 20 26 26 H 1.48499 * 109.47130 * 89.99919 * 25 23 21 27 27 H 1.48501 * 109.47274 * 210.00116 * 25 23 21 28 28 H 1.48500 * 109.47147 * 330.00145 * 25 23 21 29 29 H 1.09000 * 109.47388 * 270.13817 * 1 2 3 30 30 H 1.09007 * 109.47139 * 30.13572 * 1 2 3 31 31 H 1.08997 * 109.47004 * 150.13330 * 1 2 3 32 32 H 1.07996 * 125.57278 * 179.76871 * 5 3 2 33 33 H 1.07996 * 126.83037 * 180.02562 * 6 5 3 34 34 H 0.96996 * 120.00772 * 359.97438 * 10 8 7 35 35 H 1.09002 * 109.47068 * 299.99729 * 11 10 8 36 36 H 1.09001 * 109.47372 * 59.99816 * 11 10 8 37 37 H 1.09000 * 109.47476 * 300.00087 * 14 12 11 38 38 H 1.09008 * 109.46970 * 60.00049 * 14 12 11 39 39 H 1.08996 * 109.47654 * 179.97438 * 14 12 11 40 40 H 1.09009 * 109.47005 * 90.00146 * 16 15 12 41 41 H 1.08998 * 109.47508 * 210.00173 * 16 15 12 42 42 H 1.09006 * 109.47154 * 330.00735 * 16 15 12 43 43 H 1.08997 * 109.46891 * 299.99950 * 19 17 15 44 44 H 1.09000 * 109.46968 * 59.99766 * 19 17 15 45 45 H 0.97008 * 119.99449 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2948 1.0922 0.0000 4 1 1.9734 2.0074 0.0004 5 6 3.6095 0.7275 -0.0065 6 6 3.6882 -0.6152 -0.0052 7 6 2.3071 -1.1092 0.0027 8 6 1.8702 -2.5156 0.0067 9 8 0.6840 -2.7839 0.0133 10 7 2.7850 -3.5053 0.0031 11 6 2.3503 -4.9044 0.0076 12 6 3.5766 -5.8194 0.0016 13 1 4.1219 -5.6899 -0.9333 14 6 3.1268 -7.2759 0.1320 15 7 4.4485 -5.4749 1.1273 16 6 3.9443 -5.5680 2.4996 17 6 5.7146 -5.0723 0.9004 18 8 6.1321 -4.9956 -0.2356 19 6 6.6114 -4.7174 2.0585 20 16 8.2353 -4.2194 1.4334 21 6 9.0544 -3.8698 2.9538 22 1 8.5300 -3.9917 3.8900 23 6 10.3734 -3.4379 2.9482 24 7 10.9854 -3.1772 4.0841 25 14 11.2806 -3.2278 1.3289 26 1 11.0855 -1.8434 0.8282 27 1 12.7293 -3.4795 1.5367 28 1 10.7481 -4.1935 0.3343 29 1 -0.3634 0.0025 1.0276 30 1 -0.3634 0.8888 -0.5160 31 1 -0.3633 -0.8912 -0.5117 32 1 4.4497 1.4060 -0.0115 33 1 4.5890 -1.2109 -0.0089 34 1 3.7310 -3.2915 -0.0025 35 1 1.7568 -5.0976 0.9013 36 1 1.7469 -5.1003 -0.8787 37 1 2.5814 -7.4055 1.0669 38 1 2.4780 -7.5322 -0.7056 39 1 4.0003 -7.9278 0.1273 40 1 4.1386 -6.5666 2.8912 41 1 4.4480 -4.8291 3.1227 42 1 2.8710 -5.3777 2.5060 43 1 6.1701 -3.8945 2.6208 44 1 6.7233 -5.5839 2.7102 45 1 11.9072 -2.8750 4.0801 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001678123557.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:52 Heat of formation + Delta-G solvation = -31.107853 kcal Electronic energy + Delta-G solvation = -27215.749641 eV Core-core repulsion = 23360.243789 eV Total energy + Delta-G solvation = -3855.505852 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.35419 -40.06402 -38.85429 -36.51113 -34.19797 -32.45646 -32.25466 -31.67595 -31.01934 -28.87157 -27.10382 -26.89739 -25.91582 -25.62673 -22.56169 -21.67202 -20.72492 -19.69920 -18.98232 -17.80042 -17.74845 -17.05072 -16.44490 -16.00886 -15.64689 -15.33023 -15.22129 -14.97346 -14.50235 -14.04925 -13.96140 -13.64524 -13.43637 -13.26612 -13.20433 -13.01900 -12.90685 -12.81221 -12.73987 -12.69848 -12.45248 -12.20349 -12.15004 -11.86028 -11.68397 -11.27577 -11.11185 -11.02810 -10.60053 -9.87734 -9.85824 -9.51838 -9.14473 -9.02114 -8.88215 -8.67582 -8.51030 -8.29536 -6.93758 -6.30447 -4.02261 1.65390 2.34575 2.65903 2.86466 2.92073 3.15085 3.30959 3.42194 3.48704 3.55548 3.58877 4.31129 4.49031 4.65622 4.66758 4.83859 4.90342 5.00520 5.03618 5.08352 5.08741 5.12579 5.20746 5.36510 5.38126 5.41538 5.45517 5.50155 5.55947 5.69808 5.76983 5.77470 5.80535 5.88941 5.98253 6.00318 6.09719 6.41922 6.57457 6.64284 6.80021 7.27603 7.38160 7.61116 7.92573 8.34201 8.37142 8.40426 9.15757 10.78813 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010109 B = 0.003456 C = 0.002766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2769.228915 B = 8100.113569 C =10120.773355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.103 3.897 3 N -0.554 5.554 4 H 0.415 0.585 5 C -0.016 4.016 6 C -0.162 4.162 7 C -0.239 4.239 8 C 0.594 3.406 9 O -0.559 6.559 10 N -0.721 5.721 11 C 0.114 3.886 12 C 0.123 3.877 13 H 0.109 0.891 14 C -0.156 4.156 15 N -0.616 5.616 16 C 0.077 3.923 17 C 0.531 3.469 18 O -0.518 6.518 19 C -0.122 4.122 20 S -0.142 6.142 21 C -0.521 4.521 22 H 0.088 0.912 23 C 0.096 3.904 24 N -0.880 5.880 25 Si 0.856 3.144 26 H -0.267 1.267 27 H -0.275 1.275 28 H -0.235 1.235 29 H 0.076 0.924 30 H 0.061 0.939 31 H 0.100 0.900 32 H 0.172 0.828 33 H 0.148 0.852 34 H 0.405 0.595 35 H 0.070 0.930 36 H 0.077 0.923 37 H 0.061 0.939 38 H 0.069 0.931 39 H 0.066 0.934 40 H 0.057 0.943 41 H 0.076 0.924 42 H 0.070 0.930 43 H 0.097 0.903 44 H 0.097 0.903 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.298 2.763 -6.911 22.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.015 4.015 3 N -0.149 5.149 4 H 0.251 0.749 5 C -0.142 4.142 6 C -0.186 4.186 7 C -0.250 4.250 8 C 0.384 3.616 9 O -0.440 6.440 10 N -0.372 5.372 11 C -0.011 4.011 12 C 0.019 3.981 13 H 0.127 0.873 14 C -0.215 4.215 15 N -0.352 5.352 16 C -0.066 4.066 17 C 0.319 3.681 18 O -0.393 6.393 19 C -0.272 4.272 20 S 0.085 5.915 21 C -0.668 4.668 22 H 0.106 0.894 23 C -0.113 4.113 24 N -0.517 5.517 25 Si 0.681 3.319 26 H -0.192 1.192 27 H -0.200 1.200 28 H -0.159 1.159 29 H 0.095 0.905 30 H 0.080 0.920 31 H 0.119 0.881 32 H 0.189 0.811 33 H 0.165 0.835 34 H 0.240 0.760 35 H 0.088 0.912 36 H 0.095 0.905 37 H 0.080 0.920 38 H 0.088 0.912 39 H 0.085 0.915 40 H 0.075 0.925 41 H 0.095 0.905 42 H 0.089 0.911 43 H 0.115 0.885 44 H 0.115 0.885 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -21.347 2.843 -8.481 23.145 hybrid contribution 0.641 0.637 1.074 1.403 sum -20.706 3.479 -7.407 22.264 Atomic orbital electron populations 1.20554 0.87103 1.04038 1.03362 1.20306 0.93605 0.85709 1.01900 1.41608 1.06346 1.08313 1.58674 0.74879 1.21787 0.85524 0.96614 1.10318 1.22166 0.95894 0.93887 1.06683 1.20099 0.93377 0.91941 1.19536 1.17321 0.85064 0.84145 0.75110 1.90701 1.16640 1.84602 1.52015 1.45699 1.10352 1.05486 1.75687 1.21689 0.96244 0.80532 1.02662 1.21313 0.90586 0.94193 0.92004 0.87327 1.22038 1.02101 0.94757 1.02579 1.47903 1.12112 1.68251 1.06971 1.21784 1.00277 1.02204 0.82349 1.20377 0.81211 0.75877 0.90655 1.90698 1.73394 1.51760 1.23431 1.23321 0.99723 1.04863 0.99292 1.84763 1.04931 1.87513 1.14333 1.22309 1.00623 1.52109 0.91779 0.89423 1.24709 0.96322 0.93467 0.96782 1.69943 1.12574 1.43613 1.25579 0.86742 0.79880 0.80748 0.84504 1.19231 1.19990 1.15909 0.90538 0.91990 0.88115 0.81115 0.83453 0.75998 0.91203 0.90532 0.91995 0.91195 0.91498 0.92458 0.90527 0.91129 0.88495 0.88508 0.91952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.82 9.88 36.01 0.36 -0.47 16 2 C 0.10 1.12 7.17 -81.88 -0.59 0.53 16 3 N -0.55 -4.75 5.90 -9.10 -0.05 -4.80 16 4 H 0.41 2.09 8.96 -40.82 -0.37 1.72 16 5 C -0.02 -0.15 11.89 -16.82 -0.20 -0.35 16 6 C -0.16 -2.01 10.56 -37.50 -0.40 -2.40 16 7 C -0.24 -3.14 6.29 -103.35 -0.65 -3.79 16 8 C 0.59 8.37 7.81 -12.59 -0.10 8.27 16 9 O -0.56 -8.82 14.82 5.26 0.08 -8.74 16 10 N -0.72 -9.14 5.38 -61.43 -0.33 -9.47 16 11 C 0.11 1.23 4.92 -4.04 -0.02 1.21 16 12 C 0.12 1.34 2.80 -67.94 -0.19 1.15 16 13 H 0.11 1.40 6.90 -51.93 -0.36 1.04 16 14 C -0.16 -1.34 9.19 37.15 0.34 -0.99 16 15 N -0.62 -7.68 2.24 -173.93 -0.39 -8.07 16 16 C 0.08 0.77 9.30 59.85 0.56 1.33 16 17 C 0.53 8.91 7.40 -10.98 -0.08 8.83 16 18 O -0.52 -10.37 15.19 5.56 0.08 -10.28 16 19 C -0.12 -2.26 4.71 36.01 0.17 -2.10 16 20 S -0.14 -3.47 18.55 -107.50 -1.99 -5.47 16 21 C -0.52 -14.67 10.04 30.94 0.31 -14.36 16 22 H 0.09 2.59 8.03 -52.49 -0.42 2.16 16 23 C 0.10 2.76 5.50 -17.43 -0.10 2.66 16 24 N -0.88 -26.24 13.97 55.49 0.78 -25.47 16 25 Si 0.86 21.40 27.74 -169.99 -4.71 16.68 16 26 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 27 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 28 H -0.24 -5.86 6.74 56.52 0.38 -5.48 16 29 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.10 1.08 6.47 -51.93 -0.34 0.74 16 32 H 0.17 1.26 8.06 -52.49 -0.42 0.84 16 33 H 0.15 1.85 7.70 -52.49 -0.40 1.45 16 34 H 0.40 5.41 6.99 -40.82 -0.29 5.12 16 35 H 0.07 0.73 6.88 -51.93 -0.36 0.37 16 36 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.06 0.47 7.67 -51.93 -0.40 0.07 16 38 H 0.07 0.49 8.14 -51.92 -0.42 0.07 16 39 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.06 0.51 8.14 -51.92 -0.42 0.09 16 41 H 0.08 0.80 6.44 -51.93 -0.33 0.46 16 42 H 0.07 0.61 6.53 -51.93 -0.34 0.27 16 43 H 0.10 1.69 7.40 -51.92 -0.38 1.31 16 44 H 0.10 1.72 8.11 -51.91 -0.42 1.30 16 45 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 385.50 15.07 5.81 5.81 Total: -1.00 -35.39 385.50 -7.84 -43.23 By element: Atomic # 1 Polarization: 13.57 SS G_CDS: -6.52 Total: 7.05 kcal Atomic # 6 Polarization: 0.10 SS G_CDS: -0.59 Total: -0.49 kcal Atomic # 7 Polarization: -47.80 SS G_CDS: 0.00 Total: -47.80 kcal Atomic # 8 Polarization: -19.18 SS G_CDS: 0.16 Total: -19.02 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -4.71 Total: 16.68 kcal Atomic # 16 Polarization: -3.47 SS G_CDS: -1.99 Total: -5.47 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -35.39 -7.84 -43.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001678123557.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.123 kcal (2) G-P(sol) polarization free energy of solvation -35.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds