Wall clock time and date at job start Sat Apr 11 2020 05:39:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46499 * 109.52022 * 2 1 4 4 C 1.34780 * 119.99844 * 299.99254 * 3 2 1 5 5 O 1.21275 * 119.99861 * 0.02562 * 4 3 2 6 6 C 1.50698 * 119.99961 * 180.02562 * 4 3 2 7 7 S 1.81001 * 109.47257 * 180.02562 * 6 4 3 8 8 C 1.76203 * 100.00174 * 179.97438 * 7 6 4 9 9 H 1.08003 * 119.99705 * 359.97438 * 8 7 6 10 10 C 1.38800 * 119.99859 * 180.02562 * 8 7 6 11 11 N 1.31624 * 119.99475 * 180.02562 * 10 8 7 12 12 Si 1.86798 * 120.00100 * 359.97438 * 10 8 7 13 13 H 1.48503 * 109.47268 * 89.99976 * 12 10 8 14 14 H 1.48499 * 109.47106 * 209.99988 * 12 10 8 15 15 H 1.48496 * 109.47289 * 330.00317 * 12 10 8 16 16 C 1.53112 * 109.52327 * 239.80312 * 2 1 3 17 17 C 1.53041 * 109.27910 * 182.43960 * 16 2 1 18 18 N 1.46852 * 109.51807 * 59.18120 * 17 16 2 19 19 C 1.46898 * 110.99517 * 174.16033 * 18 17 16 20 20 C 1.50704 * 109.47540 * 294.20859 * 19 18 17 21 21 C 1.41374 * 126.79940 * 94.99923 * 20 19 18 22 22 C 1.35447 * 103.98548 * 180.02562 * 21 20 19 23 23 O 1.34037 * 106.44529 * 0.02562 * 22 21 20 24 24 N 1.20919 * 111.57085 * 359.70855 * 23 22 21 25 25 C 1.46839 * 111.19907 * 298.25537 * 18 17 16 26 26 C 1.53037 * 109.52335 * 61.74385 * 25 18 17 27 27 H 1.09001 * 109.46801 * 299.87847 * 1 2 3 28 28 H 1.09001 * 109.46998 * 59.87443 * 1 2 3 29 29 H 1.09000 * 109.47050 * 179.87734 * 1 2 3 30 30 H 0.97003 * 120.00296 * 120.00109 * 3 2 1 31 31 H 1.09003 * 109.46689 * 299.99904 * 6 4 3 32 32 H 1.09001 * 109.47604 * 59.99861 * 6 4 3 33 33 H 0.97009 * 119.99727 * 180.02562 * 11 10 8 34 34 H 1.08996 * 109.50678 * 302.38595 * 16 2 1 35 35 H 1.09005 * 109.50195 * 62.50717 * 16 2 1 36 36 H 1.08998 * 109.46561 * 299.16936 * 17 16 2 37 37 H 1.08991 * 109.45390 * 179.18852 * 17 16 2 38 38 H 1.08996 * 109.47261 * 54.21257 * 19 18 17 39 39 H 1.09007 * 109.47101 * 174.21103 * 19 18 17 40 40 H 1.08004 * 128.00807 * 359.96940 * 21 20 19 41 41 H 1.08002 * 126.77677 * 179.97438 * 22 21 20 42 42 H 1.08997 * 109.46735 * 301.73171 * 25 18 17 43 43 H 1.08996 * 109.46736 * 181.75831 * 25 18 17 44 44 H 1.08996 * 109.50678 * 180.87537 * 26 25 18 45 45 H 1.09009 * 109.53168 * 60.78245 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0196 1.3808 0.0000 4 6 1.6948 2.2109 -1.0109 5 8 0.9969 1.8149 -1.9203 6 6 2.1988 3.6311 -1.0113 7 16 1.5956 4.4851 -2.4888 8 6 2.3130 6.0747 -2.2378 9 1 2.9162 6.2627 -1.3618 10 6 2.1021 7.0856 -3.1652 11 7 2.6384 8.2729 -2.9779 12 14 1.0582 6.7606 -4.6798 13 1 -0.3611 7.0789 -4.3805 14 1 1.5313 7.6137 -5.7994 15 1 1.1745 5.3308 -5.0637 16 6 2.0417 -0.7258 -1.2473 17 6 3.5709 -0.7759 -1.2111 18 7 4.0102 -1.4789 0.0011 19 6 5.4670 -1.6678 0.0012 20 6 5.8531 -2.5986 -1.1194 21 6 6.2793 -2.2314 -2.4164 22 6 6.5015 -3.4155 -3.0354 23 8 6.2163 -4.3712 -2.1399 24 7 5.8642 -3.8998 -1.0835 25 6 3.5708 -0.7744 1.2122 26 6 2.0417 -0.7242 1.2483 27 1 -0.3633 0.5120 0.8911 28 1 -0.3633 0.5158 -0.8889 29 1 -0.3633 -1.0277 -0.0022 30 1 2.5775 1.6976 0.7275 31 1 1.8361 4.1454 -0.1213 32 1 3.2888 3.6299 -1.0114 33 1 2.4907 8.9796 -3.6259 34 1 1.6447 -1.7407 -1.2663 35 1 1.7163 -0.1903 -2.1392 36 1 3.9676 0.2393 -1.2060 37 1 3.9377 -1.3048 -2.0907 38 1 5.9582 -0.7052 -0.1405 39 1 5.7776 -2.0974 0.9536 40 1 6.3990 -1.2370 -2.8205 41 1 6.8406 -3.5609 -4.0504 42 1 3.9674 0.2408 1.2059 43 1 3.9377 -1.3020 2.0926 44 1 1.7161 -0.1877 2.1394 45 1 1.6441 -1.7390 1.2690 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699764876.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:22 Heat of formation + Delta-G solvation = 31.420268 kcal Electronic energy + Delta-G solvation = -27469.537941 eV Core-core repulsion = 23616.743511 eV Total energy + Delta-G solvation = -3852.794430 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -45.17721 -40.60743 -38.41320 -35.98382 -33.98323 -32.47203 -32.23180 -31.85936 -31.12180 -29.33251 -28.57125 -25.95254 -25.63689 -23.67602 -23.25109 -22.42275 -21.12000 -20.81165 -19.08948 -18.02984 -17.96230 -17.80659 -16.64688 -16.23307 -15.74472 -15.56300 -15.18435 -15.00356 -14.78677 -14.49051 -14.12660 -13.95921 -13.77678 -13.46998 -13.35623 -12.93305 -12.82110 -12.65484 -12.63646 -12.32958 -11.99722 -11.87131 -11.64189 -11.39114 -11.29365 -11.28932 -11.03664 -10.77411 -10.64043 -10.60500 -10.36835 -9.88851 -9.87853 -9.27269 -9.04410 -8.98372 -8.58089 -8.52793 -6.94379 -6.31852 -4.03477 1.25766 1.91520 2.74721 2.96803 3.01318 3.28444 3.32065 3.47452 3.60210 3.67360 3.87609 4.30068 4.30279 4.43416 4.56517 4.71760 4.73936 4.85207 4.92084 4.98036 5.02556 5.07321 5.12758 5.21340 5.27550 5.34578 5.37206 5.41981 5.49968 5.58271 5.70348 5.71865 5.73809 5.75992 5.80441 5.90992 5.97601 5.98524 6.21542 6.33984 6.65083 6.72391 6.80127 7.65264 7.91244 8.02775 8.38613 8.51454 9.14384 10.77468 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013484 B = 0.002784 C = 0.002511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2076.038528 B =10053.343225 C =11148.981573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.178 3.822 3 N -0.729 5.729 4 C 0.534 3.466 5 O -0.514 6.514 6 C -0.125 4.125 7 S -0.140 6.140 8 C -0.522 4.522 9 H 0.087 0.913 10 C 0.095 3.905 11 N -0.881 5.881 12 Si 0.857 3.143 13 H -0.267 1.267 14 H -0.274 1.274 15 H -0.235 1.235 16 C -0.125 4.125 17 C 0.057 3.943 18 N -0.531 5.531 19 C 0.132 3.868 20 C 0.025 3.975 21 C -0.231 4.231 22 C -0.060 4.060 23 O 0.098 5.902 24 N -0.350 5.350 25 C 0.056 3.944 26 C -0.117 4.117 27 H 0.054 0.946 28 H 0.082 0.918 29 H 0.060 0.940 30 H 0.395 0.605 31 H 0.095 0.905 32 H 0.093 0.907 33 H 0.271 0.729 34 H 0.073 0.927 35 H 0.094 0.906 36 H 0.039 0.961 37 H 0.073 0.927 38 H 0.059 0.941 39 H 0.091 0.909 40 H 0.171 0.829 41 H 0.216 0.784 42 H 0.038 0.962 43 H 0.078 0.922 44 H 0.075 0.925 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.058 -23.001 6.977 24.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.092 3.908 3 N -0.384 5.384 4 C 0.320 3.680 5 O -0.389 6.389 6 C -0.276 4.276 7 S 0.087 5.913 8 C -0.669 4.669 9 H 0.105 0.895 10 C -0.113 4.113 11 N -0.517 5.517 12 Si 0.682 3.318 13 H -0.192 1.192 14 H -0.200 1.200 15 H -0.159 1.159 16 C -0.164 4.164 17 C -0.070 4.070 18 N -0.257 5.257 19 C 0.004 3.996 20 C -0.135 4.135 21 C -0.253 4.253 22 C -0.142 4.142 23 O 0.030 5.970 24 N -0.053 5.053 25 C -0.071 4.071 26 C -0.155 4.155 27 H 0.073 0.927 28 H 0.101 0.899 29 H 0.079 0.921 30 H 0.230 0.770 31 H 0.113 0.887 32 H 0.112 0.888 33 H 0.081 0.919 34 H 0.092 0.908 35 H 0.112 0.888 36 H 0.058 0.942 37 H 0.092 0.908 38 H 0.077 0.923 39 H 0.110 0.890 40 H 0.188 0.812 41 H 0.233 0.767 42 H 0.056 0.944 43 H 0.097 0.903 44 H 0.094 0.906 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 4.409 -24.843 6.353 26.019 hybrid contribution 1.323 2.464 0.192 2.803 sum 5.732 -22.379 6.546 24.011 Atomic orbital electron populations 1.22199 0.94074 1.02135 1.03697 1.20293 0.94229 0.80982 0.95272 1.46170 1.54852 1.11603 1.25757 1.20185 0.79721 0.86720 0.81401 1.90629 1.36474 1.76480 1.35300 1.23298 1.04388 0.94690 1.05222 1.84760 1.69466 1.10969 1.26143 1.22321 1.37238 0.94496 1.12889 0.89482 1.24717 0.94845 0.93981 0.97784 1.69940 1.43081 1.02330 1.36379 0.86731 0.81188 0.81172 0.82727 1.19206 1.19953 1.15928 1.22007 0.94109 1.00879 0.99400 1.22113 0.96329 0.96467 0.92090 1.61912 1.10425 1.50494 1.02889 1.20284 0.88722 0.95522 0.95096 1.23402 1.02233 0.91079 0.96737 1.22829 1.07242 1.00895 0.94287 1.26019 1.02640 0.87358 0.98136 1.84855 1.61487 1.34600 1.16009 1.73848 1.16068 1.12076 1.03295 1.22080 0.95868 0.96715 0.92467 1.21889 0.94686 1.01837 0.97053 0.92713 0.89936 0.92115 0.77028 0.88710 0.88846 0.91931 0.90812 0.88788 0.94247 0.90847 0.92298 0.89035 0.81176 0.76725 0.94430 0.90338 0.90608 0.89491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.90 8.41 37.16 0.31 -1.59 16 2 C 0.18 1.94 0.66 -131.70 -0.09 1.86 16 3 N -0.73 -8.72 4.17 -47.50 -0.20 -8.92 16 4 C 0.53 8.82 7.27 -10.99 -0.08 8.74 16 5 O -0.51 -10.11 12.08 5.56 0.07 -10.04 16 6 C -0.13 -2.33 6.16 36.00 0.22 -2.11 16 7 S -0.14 -3.45 18.55 -107.50 -1.99 -5.44 16 8 C -0.52 -14.83 10.04 30.94 0.31 -14.52 16 9 H 0.09 2.59 8.03 -52.48 -0.42 2.17 16 10 C 0.10 2.76 5.50 -17.43 -0.10 2.67 16 11 N -0.88 -26.38 13.97 55.49 0.78 -25.61 16 12 Si 0.86 21.55 27.74 -169.99 -4.71 16.83 16 13 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 14 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 15 H -0.24 -5.88 6.74 56.52 0.38 -5.50 16 16 C -0.13 -1.51 4.71 -26.65 -0.13 -1.64 16 17 C 0.06 0.64 5.16 -3.83 -0.02 0.62 16 18 N -0.53 -5.18 4.65 -236.12 -1.10 -6.28 16 19 C 0.13 1.19 5.56 -4.98 -0.03 1.16 16 20 C 0.03 0.26 6.01 -82.10 -0.49 -0.24 16 21 C -0.23 -1.92 10.03 -39.39 -0.40 -2.31 16 22 C -0.06 -0.42 12.30 29.74 0.37 -0.05 16 23 O 0.10 0.96 11.20 17.19 0.19 1.15 16 24 N -0.35 -4.03 12.07 33.42 0.40 -3.63 16 25 C 0.06 0.46 5.30 -3.84 -0.02 0.44 16 26 C -0.12 -0.96 4.92 -26.65 -0.13 -1.10 16 27 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.08 1.22 6.17 -51.93 -0.32 0.90 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.40 3.82 7.48 -40.82 -0.31 3.51 16 31 H 0.09 1.67 8.14 -51.91 -0.42 1.25 16 32 H 0.09 1.63 8.14 -51.92 -0.42 1.21 16 33 H 0.27 7.53 8.31 -40.82 -0.34 7.20 16 34 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.09 1.41 6.13 -51.93 -0.32 1.09 16 36 H 0.04 0.48 7.69 -51.93 -0.40 0.08 16 37 H 0.07 0.85 6.25 -51.93 -0.32 0.52 16 38 H 0.06 0.48 8.12 -51.93 -0.42 0.06 16 39 H 0.09 0.76 7.99 -51.93 -0.41 0.34 16 40 H 0.17 1.17 8.06 -52.48 -0.42 0.75 16 41 H 0.22 0.57 8.06 -52.49 -0.42 0.15 16 42 H 0.04 0.29 7.02 -51.93 -0.36 -0.07 16 43 H 0.08 0.54 8.02 -51.93 -0.42 0.13 16 44 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.09 0.73 8.14 -51.92 -0.42 0.31 16 LS Contribution 371.71 15.07 5.60 5.60 Total: -1.00 -34.00 371.71 -7.90 -41.90 By element: Atomic # 1 Polarization: 9.18 SS G_CDS: -6.67 Total: 2.51 kcal Atomic # 6 Polarization: -7.81 SS G_CDS: -0.26 Total: -8.07 kcal Atomic # 7 Polarization: -44.32 SS G_CDS: -0.12 Total: -44.44 kcal Atomic # 8 Polarization: -9.15 SS G_CDS: 0.26 Total: -8.89 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -4.71 Total: 16.83 kcal Atomic # 16 Polarization: -3.45 SS G_CDS: -1.99 Total: -5.44 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -34.00 -7.90 -41.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699764876.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.321 kcal (2) G-P(sol) polarization free energy of solvation -34.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.901 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds