Wall clock time and date at job start Sat Apr 11 2020 05:39:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 S 1.70445 * 124.59195 * 2 1 4 4 C 1.75508 * 92.44717 * 179.97438 * 3 2 1 5 5 C 1.32775 * 110.57157 * 359.73865 * 4 3 2 6 6 C 1.36016 * 124.58997 * 180.02562 * 2 1 3 7 7 C 1.47186 * 123.46173 * 359.97355 * 6 2 1 8 8 O 1.21634 * 120.00249 * 0.02562 * 7 6 2 9 9 N 1.34774 * 119.99768 * 180.02562 * 7 6 2 10 10 C 1.46506 * 120.00072 * 180.02562 * 9 7 6 11 11 C 1.52997 * 109.47289 * 180.02562 * 10 9 7 12 12 C 1.52996 * 109.47131 * 180.02562 * 11 10 9 13 13 H 1.09007 * 109.46739 * 304.99950 * 12 11 10 14 14 C 1.52999 * 109.47461 * 184.99710 * 12 11 10 15 15 N 1.46895 * 109.47375 * 64.99626 * 12 11 10 16 16 C 1.46903 * 111.00510 * 205.00001 * 15 12 11 17 17 C 1.50695 * 109.47558 * 179.97438 * 16 15 12 18 18 O 1.21291 * 120.00053 * 0.02562 * 17 16 15 19 19 N 1.34780 * 120.00227 * 179.97438 * 17 16 15 20 20 C 1.37095 * 119.99907 * 180.02562 * 19 17 16 21 21 H 1.07997 * 120.00047 * 0.02562 * 20 19 17 22 22 C 1.38949 * 119.99571 * 180.02562 * 20 19 17 23 23 N 1.31410 * 119.99814 * 180.02562 * 22 20 19 24 24 Si 1.86804 * 120.00262 * 0.02562 * 22 20 19 25 25 H 1.48496 * 109.47378 * 89.99529 * 24 22 20 26 26 H 1.48501 * 109.47014 * 210.00034 * 24 22 20 27 27 H 1.48501 * 109.46642 * 329.99474 * 24 22 20 28 28 H 1.09000 * 109.47004 * 269.99348 * 1 2 3 29 29 H 1.08995 * 109.47294 * 30.00165 * 1 2 3 30 30 H 1.09001 * 109.46839 * 150.00032 * 1 2 3 31 31 H 1.07996 * 124.71243 * 179.97438 * 4 3 2 32 32 H 1.08004 * 123.45454 * 180.22554 * 5 4 3 33 33 H 0.97001 * 120.00676 * 359.97438 * 9 7 6 34 34 H 1.09001 * 109.47060 * 300.00359 * 10 9 7 35 35 H 1.09004 * 109.47073 * 59.99848 * 10 9 7 36 36 H 1.09001 * 109.46832 * 299.99854 * 11 10 9 37 37 H 1.08996 * 109.46952 * 59.99873 * 11 10 9 38 38 H 1.09006 * 109.46649 * 59.99963 * 14 12 11 39 39 H 1.08992 * 109.47282 * 179.97438 * 14 12 11 40 40 H 1.09001 * 109.47049 * 300.00519 * 14 12 11 41 41 H 1.00896 * 111.00356 * 328.95729 * 15 12 11 42 42 H 1.09005 * 109.47029 * 300.00514 * 16 15 12 43 43 H 1.09003 * 109.46582 * 59.99819 * 16 15 12 44 44 H 0.96996 * 119.99482 * 0.02562 * 19 17 16 45 45 H 0.97004 * 120.00014 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.4747 1.4031 0.0000 4 6 3.9607 0.4693 0.0008 5 6 3.6943 -0.8314 0.0067 6 6 2.2792 -1.1197 -0.0005 7 6 1.7290 -2.4849 -0.0005 8 8 0.5247 -2.6553 -0.0006 9 7 2.5598 -3.5462 -0.0005 10 6 2.0123 -4.9051 -0.0011 11 6 3.1596 -5.9172 -0.0004 12 6 2.5878 -7.3363 -0.0016 13 1 1.9043 -7.4533 0.8394 14 6 3.7298 -8.3465 0.1248 15 7 1.8632 -7.5712 -1.2577 16 6 0.8400 -8.6117 -1.0887 17 6 0.1189 -8.8240 -2.3948 18 8 0.4272 -8.1730 -3.3706 19 7 -0.8680 -9.7381 -2.4788 20 6 -1.5236 -9.9316 -3.6672 21 1 -1.2490 -9.3519 -4.5360 22 6 -2.5414 -10.8736 -3.7537 23 7 -3.1695 -11.0595 -4.8929 24 14 -3.0168 -11.8758 -2.2506 25 1 -4.0785 -11.1629 -1.4959 26 1 -3.5222 -13.2042 -2.6810 27 1 -1.8273 -12.0570 -1.3802 28 1 -0.3633 -0.0001 1.0277 29 1 -0.3633 0.8899 -0.5138 30 1 -0.3633 -0.8900 -0.5138 31 1 4.9538 0.8938 0.0006 32 1 4.4577 -1.5955 0.0118 33 1 3.5202 -3.4104 -0.0009 34 1 1.3995 -5.0503 0.8885 35 1 1.4002 -5.0498 -0.8914 36 1 3.7727 -5.7721 -0.8899 37 1 3.7712 -5.7723 0.8901 38 1 4.2675 -8.1723 1.0569 39 1 3.3224 -9.3574 0.1243 40 1 4.4133 -8.2294 -0.7162 41 1 1.4554 -6.7162 -1.6052 42 1 1.3160 -9.5426 -0.7804 43 1 0.1262 -8.2989 -0.3266 44 1 -1.1143 -10.2590 -1.6985 45 1 -3.8803 -11.7169 -4.9532 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700323198.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:30 Heat of formation + Delta-G solvation = -72.613884 kcal Electronic energy + Delta-G solvation = -26031.379888 eV Core-core repulsion = 22174.074199 eV Total energy + Delta-G solvation = -3857.305689 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.08839 -40.37632 -38.59373 -37.81166 -36.13638 -35.78935 -33.78630 -32.96374 -32.60273 -30.25525 -28.26860 -27.92769 -25.75782 -25.00792 -23.50636 -22.60293 -21.44696 -21.32723 -20.44155 -20.16099 -18.28484 -17.83042 -17.69879 -17.21603 -16.90647 -16.73680 -16.54145 -16.08518 -15.63140 -15.43807 -15.10783 -14.89677 -14.59347 -14.46333 -14.43203 -14.34974 -14.12132 -13.93765 -13.62411 -13.40389 -13.17686 -13.06399 -12.91727 -12.60454 -12.58140 -12.43426 -12.26558 -12.16222 -11.98886 -11.97906 -11.73504 -11.53307 -10.85537 -10.45453 -10.26848 -10.23789 -9.74439 -9.40696 -9.32488 -8.42875 -6.03940 -0.22112 0.52768 0.96098 0.99738 1.28664 1.34352 1.43281 1.93456 2.20724 2.21700 2.30758 2.72110 3.13272 3.39407 3.69883 3.76598 3.81636 3.97279 4.09835 4.15464 4.15965 4.37842 4.40806 4.47168 4.52368 4.59179 4.59419 4.61626 4.67667 4.95636 4.97189 5.00187 5.03784 5.05624 5.17348 5.22763 5.29742 5.41554 5.48836 5.52203 5.90049 6.08791 6.38022 6.50430 6.58051 6.86071 7.18831 7.37550 7.94338 8.74861 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.015385 B = 0.001992 C = 0.001839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1819.574849 B =14053.120070 C =15222.926651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.165 4.165 3 S 0.215 5.785 4 C -0.229 4.229 5 C -0.113 4.113 6 C -0.199 4.199 7 C 0.568 3.432 8 O -0.580 6.580 9 N -0.708 5.708 10 C 0.117 3.883 11 C -0.118 4.118 12 C 0.084 3.916 13 H 0.058 0.942 14 C -0.136 4.136 15 N -0.685 5.685 16 C 0.061 3.939 17 C 0.446 3.554 18 O -0.615 6.615 19 N -0.591 5.591 20 C -0.330 4.330 21 H 0.054 0.946 22 C -0.017 4.017 23 N -0.934 5.934 24 Si 0.966 3.034 25 H -0.258 1.258 26 H -0.273 1.273 27 H -0.230 1.230 28 H 0.081 0.919 29 H 0.084 0.916 30 H 0.075 0.925 31 H 0.201 0.799 32 H 0.174 0.826 33 H 0.416 0.584 34 H 0.063 0.937 35 H 0.041 0.959 36 H 0.081 0.919 37 H 0.110 0.890 38 H 0.082 0.918 39 H 0.050 0.950 40 H 0.053 0.947 41 H 0.340 0.660 42 H 0.115 0.885 43 H 0.073 0.927 44 H 0.390 0.610 45 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.554 21.177 21.201 35.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.285 4.285 3 S 0.481 5.519 4 C -0.364 4.364 5 C -0.141 4.141 6 C -0.216 4.216 7 C 0.356 3.644 8 O -0.462 6.462 9 N -0.360 5.360 10 C -0.007 4.007 11 C -0.156 4.156 12 C -0.026 4.026 13 H 0.075 0.925 14 C -0.194 4.194 15 N -0.320 5.320 16 C -0.071 4.071 17 C 0.235 3.765 18 O -0.500 6.500 19 N -0.233 5.233 20 C -0.459 4.459 21 H 0.072 0.928 22 C -0.215 4.215 23 N -0.575 5.575 24 Si 0.786 3.214 25 H -0.183 1.183 26 H -0.198 1.198 27 H -0.154 1.154 28 H 0.100 0.900 29 H 0.103 0.897 30 H 0.093 0.907 31 H 0.218 0.782 32 H 0.191 0.809 33 H 0.254 0.746 34 H 0.081 0.919 35 H 0.059 0.941 36 H 0.099 0.901 37 H 0.128 0.872 38 H 0.101 0.899 39 H 0.069 0.931 40 H 0.072 0.928 41 H 0.161 0.839 42 H 0.133 0.867 43 H 0.091 0.909 44 H 0.225 0.775 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 17.973 22.483 20.177 35.151 hybrid contribution -0.971 -1.866 0.278 2.122 sum 17.001 20.617 20.455 33.653 Atomic orbital electron populations 1.20584 0.87357 1.03957 1.03542 1.24811 1.02272 0.98500 1.02948 1.82970 0.94592 1.05543 1.68825 1.25839 1.03419 0.96837 1.10307 1.21384 0.93295 0.97657 1.01755 1.20255 0.94528 0.92510 1.14322 1.18048 0.85787 0.85066 0.75507 1.90746 1.16447 1.86819 1.52146 1.45666 1.10638 1.05042 1.74671 1.21382 0.97248 0.81077 1.01009 1.21901 0.97025 0.91593 1.05111 1.21631 0.96088 0.95124 0.89707 0.92452 1.21783 0.97249 0.98050 1.02320 1.60248 1.29502 1.12272 1.29946 1.21688 0.94047 0.98986 0.92415 1.21044 0.81936 0.81879 0.91691 1.90540 1.67875 1.50656 1.40894 1.42034 1.33322 1.36657 1.11239 1.19004 1.15788 1.21524 0.89565 0.92810 1.26152 0.95527 0.98344 1.01505 1.69808 1.24328 1.35725 1.27591 0.85349 0.80302 0.78051 0.77727 1.18251 1.19794 1.15352 0.90049 0.89715 0.90667 0.78236 0.80899 0.74631 0.91889 0.94060 0.90082 0.87175 0.89890 0.93127 0.92763 0.83914 0.86701 0.90922 0.77462 0.91109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.95 9.60 71.24 0.68 -1.27 16 2 C -0.16 -3.17 6.34 25.17 0.16 -3.01 16 3 S 0.21 2.56 22.97 -56.49 -1.30 1.26 16 4 C -0.23 -2.15 11.12 66.64 0.74 -1.41 16 5 C -0.11 -1.37 9.91 22.67 0.22 -1.15 16 6 C -0.20 -3.98 5.98 -19.87 -0.12 -4.09 16 7 C 0.57 14.32 7.79 86.59 0.67 15.00 16 8 O -0.58 -19.59 14.06 -4.14 -0.06 -19.64 16 9 N -0.71 -13.24 5.53 -466.59 -2.58 -15.82 16 10 C 0.12 2.44 5.50 86.38 0.48 2.92 16 11 C -0.12 -1.80 4.92 30.59 0.15 -1.65 16 12 C 0.08 1.63 2.65 44.91 0.12 1.75 16 13 H 0.06 1.01 7.80 -2.38 -0.02 1.00 16 14 C -0.14 -2.29 9.41 71.98 0.68 -1.62 16 15 N -0.68 -20.47 5.93 -495.58 -2.94 -23.41 16 16 C 0.06 1.95 5.97 85.55 0.51 2.46 16 17 C 0.45 21.08 7.82 87.66 0.69 21.76 16 18 O -0.62 -35.60 15.78 -3.06 -0.05 -35.65 16 19 N -0.59 -28.94 5.09 -306.99 -1.56 -30.51 16 20 C -0.33 -19.94 10.16 84.04 0.85 -19.08 16 21 H 0.05 3.87 7.39 -2.91 -0.02 3.85 16 22 C -0.02 -0.95 5.50 84.93 0.47 -0.49 16 23 N -0.93 -57.58 13.96 21.66 0.30 -57.28 16 24 Si 0.97 39.80 27.74 68.60 1.90 41.70 16 25 H -0.26 -10.12 7.11 99.48 0.71 -9.41 16 26 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 27 H -0.23 -7.98 6.52 99.48 0.65 -7.33 16 28 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 29 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.07 2.02 5.94 -2.39 -0.01 2.01 16 31 H 0.20 0.57 8.06 -2.91 -0.02 0.55 16 32 H 0.17 1.02 7.10 -2.91 -0.02 1.00 16 33 H 0.42 4.67 7.02 -92.71 -0.65 4.02 16 34 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 35 H 0.04 1.15 6.43 -2.38 -0.02 1.13 16 36 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 37 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 38 H 0.08 0.93 8.14 -2.38 -0.02 0.91 16 39 H 0.05 0.93 7.45 -2.39 -0.02 0.91 16 40 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 41 H 0.34 11.42 6.17 -89.70 -0.55 10.87 16 42 H 0.12 3.09 7.44 -2.38 -0.02 3.07 16 43 H 0.07 1.96 8.06 -2.39 -0.02 1.94 16 44 H 0.39 15.79 5.76 -92.71 -0.53 15.26 16 45 H 0.28 15.70 8.31 -92.71 -0.77 14.93 16 Total: -1.00 -86.73 384.36 -0.73 -87.46 By element: Atomic # 1 Polarization: 42.52 SS G_CDS: -0.75 Total: 41.77 kcal Atomic # 6 Polarization: 3.82 SS G_CDS: 6.30 Total: 10.12 kcal Atomic # 7 Polarization: -120.23 SS G_CDS: -6.78 Total: -127.01 kcal Atomic # 8 Polarization: -55.19 SS G_CDS: -0.11 Total: -55.29 kcal Atomic # 14 Polarization: 39.80 SS G_CDS: 1.90 Total: 41.70 kcal Atomic # 16 Polarization: 2.56 SS G_CDS: -1.30 Total: 1.26 kcal Total: -86.73 -0.73 -87.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700323198.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.846 kcal (2) G-P(sol) polarization free energy of solvation -86.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds