Wall clock time and date at job start Sat Apr 11 2020 05:38:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 S 1.70451 * 124.59429 * 2 1 4 4 C 1.75508 * 92.44438 * 180.02562 * 3 2 1 5 5 C 1.32768 * 110.57488 * 359.73812 * 4 3 2 6 6 C 1.36016 * 124.59197 * 180.02562 * 2 1 3 7 7 C 1.47187 * 123.45620 * 359.94975 * 6 2 1 8 8 O 1.21640 * 120.00385 * 328.86705 * 7 6 2 9 9 N 1.34776 * 119.99884 * 148.87343 * 7 6 2 10 10 C 1.46502 * 119.99937 * 6.05835 * 9 7 6 11 11 C 1.46505 * 120.00048 * 186.05792 * 9 7 6 12 12 H 1.08994 * 109.47289 * 0.02562 * 11 9 7 13 13 C 1.53002 * 109.47145 * 240.00018 * 11 9 7 14 14 C 1.53004 * 109.47044 * 119.99975 * 11 9 7 15 15 N 1.46898 * 109.47078 * 304.99959 * 14 11 9 16 16 C 1.46897 * 111.00162 * 180.02562 * 15 14 11 17 17 C 1.50703 * 109.47326 * 180.02562 * 16 15 14 18 18 O 1.21288 * 119.99978 * 359.97438 * 17 16 15 19 19 N 1.34773 * 120.00049 * 180.02562 * 17 16 15 20 20 C 1.37092 * 120.00103 * 179.97438 * 19 17 16 21 21 H 1.08000 * 120.00097 * 359.97438 * 20 19 17 22 22 C 1.38956 * 120.00144 * 179.97438 * 20 19 17 23 23 N 1.31410 * 119.99996 * 180.02562 * 22 20 19 24 24 Si 1.86797 * 119.99927 * 359.97438 * 22 20 19 25 25 H 1.48498 * 109.47220 * 90.00115 * 24 22 20 26 26 H 1.48501 * 109.47042 * 210.00247 * 24 22 20 27 27 H 1.48501 * 109.46971 * 330.00149 * 24 22 20 28 28 H 1.08998 * 109.47342 * 269.96437 * 1 2 3 29 29 H 1.09001 * 109.46669 * 29.96307 * 1 2 3 30 30 H 1.09001 * 109.47335 * 149.96149 * 1 2 3 31 31 H 1.08003 * 124.71020 * 179.97438 * 4 3 2 32 32 H 1.08002 * 123.45441 * 180.24821 * 5 4 3 33 33 H 1.08997 * 109.47396 * 83.89935 * 10 9 7 34 34 H 1.09000 * 109.47259 * 323.88909 * 10 9 7 35 35 H 1.09002 * 109.47071 * 203.89393 * 10 9 7 36 36 H 1.09006 * 109.46961 * 299.99711 * 13 11 9 37 37 H 1.09000 * 109.46953 * 59.99663 * 13 11 9 38 38 H 1.08997 * 109.47022 * 180.02562 * 13 11 9 39 39 H 1.08998 * 109.47087 * 64.99888 * 14 11 9 40 40 H 1.09001 * 109.46893 * 184.99937 * 14 11 9 41 41 H 1.00903 * 110.99730 * 56.04476 * 15 14 11 42 42 H 1.09001 * 109.47065 * 299.99929 * 16 15 14 43 43 H 1.09001 * 109.47055 * 59.99796 * 16 15 14 44 44 H 0.97005 * 120.00085 * 359.97438 * 19 17 16 45 45 H 0.97004 * 119.99972 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 16 2.4747 1.4031 0.0000 4 6 3.9606 0.4692 -0.0008 5 6 3.6943 -0.8315 0.0047 6 6 2.2791 -1.1197 -0.0005 7 6 1.7289 -2.4849 0.0000 8 8 0.6656 -2.7119 0.5454 9 7 2.4033 -3.4834 -0.6038 10 6 3.7432 -3.2404 -1.1442 11 6 1.7965 -4.8118 -0.7198 12 1 0.8063 -4.8000 -0.2643 13 6 2.6758 -5.8385 -0.0032 14 6 1.6731 -5.1889 -2.1975 15 7 0.9296 -4.1411 -2.9098 16 6 0.7907 -4.4702 -4.3346 17 6 0.0250 -3.3747 -5.0309 18 8 -0.3668 -2.4145 -4.4020 19 7 -0.2252 -3.4624 -6.3523 20 6 -0.9221 -2.4661 -6.9856 21 1 -1.2711 -1.6111 -6.4256 22 6 -1.1797 -2.5563 -8.3481 23 7 -1.8473 -1.6011 -8.9553 24 14 -0.5756 -4.0348 -9.3170 25 1 -1.6157 -5.0945 -9.3027 26 1 -0.3012 -3.6293 -10.7190 27 1 0.6704 -4.5557 -8.6995 28 1 -0.3634 -0.0006 1.0276 29 1 -0.3633 0.8903 -0.5133 30 1 -0.3634 -0.8896 -0.5144 31 1 4.9538 0.8936 -0.0014 32 1 4.4576 -1.5955 0.0092 33 1 4.4802 -3.3419 -0.3476 34 1 3.7911 -2.2329 -1.5574 35 1 3.9551 -3.9657 -1.9298 36 1 3.6659 -5.8503 -0.4591 37 1 2.7638 -5.5698 1.0495 38 1 2.2246 -6.8269 -0.0898 39 1 2.6680 -5.2874 -2.6316 40 1 1.1419 -6.1364 -2.2875 41 1 1.3674 -3.2403 -2.7873 42 1 1.7793 -4.5641 -4.7839 43 1 0.2531 -5.4127 -4.4391 44 1 0.0879 -4.2305 -6.8553 45 1 -2.0274 -1.6642 -9.9064 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715326236.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:32 Heat of formation + Delta-G solvation = -20.028606 kcal Electronic energy + Delta-G solvation = -27607.262640 eV Core-core repulsion = 23752.237220 eV Total energy + Delta-G solvation = -3855.025420 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.42418 -38.48862 -37.49202 -36.59396 -34.68367 -33.81559 -32.12636 -31.74090 -31.58236 -27.74004 -27.49540 -26.92735 -25.01261 -24.03831 -23.05733 -21.81267 -20.20718 -19.34661 -18.94268 -18.31312 -17.34380 -16.59169 -16.41394 -16.18649 -15.67637 -15.13157 -14.91827 -14.75779 -14.30709 -14.02297 -13.84761 -13.78204 -13.40668 -13.24681 -13.15689 -12.88106 -12.73525 -12.64920 -12.46312 -12.27331 -12.19832 -11.94798 -11.87791 -11.74194 -11.58373 -11.49255 -11.17650 -11.02664 -10.96894 -10.59121 -9.96339 -9.76084 -9.55659 -8.95045 -8.74096 -8.53842 -8.48057 -8.17188 -8.08796 -6.29640 -3.80814 0.78015 1.40935 1.79611 1.94798 2.92109 3.02475 3.07421 3.15198 3.25921 3.76261 4.06993 4.11763 4.52968 4.63959 4.79200 4.84883 4.88919 5.02478 5.05767 5.10501 5.21847 5.23706 5.28631 5.36563 5.44696 5.48727 5.50033 5.61046 5.65214 5.68286 5.79974 5.82021 5.86732 5.87786 5.94630 6.06295 6.16985 6.27794 6.50680 7.12095 7.31763 7.59094 7.61107 8.16340 8.21171 8.61785 8.96858 9.44141 9.85145 10.83621 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011157 B = 0.003202 C = 0.002720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2508.985360 B = 8743.196585 C =10292.940036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C -0.132 4.132 3 S 0.175 5.825 4 C -0.242 4.242 5 C -0.114 4.114 6 C -0.176 4.176 7 C 0.588 3.412 8 O -0.525 6.525 9 N -0.607 5.607 10 C 0.068 3.932 11 C 0.139 3.861 12 H 0.111 0.889 13 C -0.158 4.158 14 C 0.049 3.951 15 N -0.664 5.664 16 C 0.048 3.952 17 C 0.450 3.550 18 O -0.561 6.561 19 N -0.591 5.591 20 C -0.304 4.304 21 H 0.119 0.881 22 C 0.041 3.959 23 N -0.882 5.882 24 Si 0.880 3.120 25 H -0.271 1.271 26 H -0.277 1.277 27 H -0.270 1.270 28 H 0.081 0.919 29 H 0.070 0.930 30 H 0.094 0.906 31 H 0.166 0.834 32 H 0.155 0.845 33 H 0.057 0.943 34 H 0.081 0.919 35 H 0.070 0.930 36 H 0.056 0.944 37 H 0.061 0.939 38 H 0.069 0.931 39 H 0.029 0.971 40 H 0.083 0.917 41 H 0.350 0.650 42 H 0.042 0.958 43 H 0.087 0.913 44 H 0.370 0.630 45 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.198 -3.677 17.899 24.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.253 4.253 3 S 0.441 5.559 4 C -0.376 4.376 5 C -0.143 4.143 6 C -0.193 4.193 7 C 0.376 3.624 8 O -0.402 6.402 9 N -0.340 5.340 10 C -0.075 4.075 11 C 0.035 3.965 12 H 0.129 0.871 13 C -0.216 4.216 14 C -0.081 4.081 15 N -0.297 5.297 16 C -0.085 4.085 17 C 0.235 3.765 18 O -0.443 6.443 19 N -0.231 5.231 20 C -0.433 4.433 21 H 0.137 0.863 22 C -0.162 4.162 23 N -0.522 5.522 24 Si 0.706 3.294 25 H -0.196 1.196 26 H -0.202 1.202 27 H -0.196 1.196 28 H 0.100 0.900 29 H 0.089 0.911 30 H 0.112 0.888 31 H 0.184 0.816 32 H 0.172 0.828 33 H 0.075 0.925 34 H 0.100 0.900 35 H 0.089 0.911 36 H 0.075 0.925 37 H 0.080 0.920 38 H 0.088 0.912 39 H 0.047 0.953 40 H 0.102 0.898 41 H 0.170 0.830 42 H 0.060 0.940 43 H 0.106 0.894 44 H 0.203 0.797 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 14.354 -1.752 18.579 23.543 hybrid contribution 1.891 -2.558 -1.516 3.524 sum 16.244 -4.310 17.063 23.950 Atomic orbital electron populations 1.20499 0.86539 1.04387 1.03315 1.24510 1.01932 0.96696 1.02116 1.83092 0.95000 1.07534 1.70281 1.25396 1.02276 0.97280 1.12688 1.21575 0.94738 0.96454 1.01541 1.20061 0.92805 0.93625 1.12765 1.17537 0.83659 0.83442 0.77759 1.90780 1.22072 1.83322 1.44031 1.47637 1.17348 1.10551 1.58510 1.22199 0.83469 1.03142 0.98728 1.21170 0.98976 0.80986 0.95325 0.87060 1.22095 0.99851 0.98876 1.00801 1.22359 0.96126 0.96355 0.93310 1.59974 1.55026 1.05251 1.09454 1.21715 0.98868 0.99135 0.88750 1.19715 0.85498 0.88758 0.82492 1.90574 1.54862 1.34034 1.64801 1.42199 1.51538 1.21692 1.07689 1.19431 1.30036 1.01466 0.92328 0.86321 1.25031 0.97254 0.97488 0.96387 1.69624 1.39360 1.32324 1.10919 0.86670 0.79154 0.82930 0.80601 1.19606 1.20215 1.19591 0.90021 0.91139 0.88781 0.81609 0.82777 0.92455 0.90030 0.91100 0.92464 0.92040 0.91200 0.95347 0.89840 0.82975 0.94037 0.89444 0.79750 0.91648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.23 9.43 36.00 0.34 -0.89 16 2 C -0.13 -1.76 6.33 -35.11 -0.22 -1.99 16 3 S 0.18 1.81 22.97 -107.50 -2.47 -0.66 16 4 C -0.24 -2.18 11.12 28.86 0.32 -1.86 16 5 C -0.11 -1.13 8.00 -39.02 -0.31 -1.45 16 6 C -0.18 -2.34 5.49 -104.63 -0.57 -2.91 16 7 C 0.59 8.69 7.24 -12.63 -0.09 8.60 16 8 O -0.53 -9.42 14.55 5.24 0.08 -9.35 16 9 N -0.61 -7.18 1.83 -175.28 -0.32 -7.50 16 10 C 0.07 0.58 7.84 59.85 0.47 1.05 16 11 C 0.14 1.59 2.94 -67.92 -0.20 1.39 16 12 H 0.11 1.58 6.91 -51.93 -0.36 1.22 16 13 C -0.16 -1.29 9.19 37.16 0.34 -0.95 16 14 C 0.05 0.58 5.00 -3.82 -0.02 0.56 16 15 N -0.66 -10.89 6.12 -115.06 -0.70 -11.59 16 16 C 0.05 0.82 6.17 -4.98 -0.03 0.79 16 17 C 0.45 10.47 7.82 -10.99 -0.09 10.39 16 18 O -0.56 -15.51 15.78 5.55 0.09 -15.43 16 19 N -0.59 -14.30 5.09 -10.96 -0.06 -14.36 16 20 C -0.30 -8.71 10.16 -14.93 -0.15 -8.86 16 21 H 0.12 3.90 7.39 -52.49 -0.39 3.51 16 22 C 0.04 1.14 5.50 -17.47 -0.10 1.04 16 23 N -0.88 -25.98 13.96 55.50 0.77 -25.21 16 24 Si 0.88 19.49 27.74 -169.99 -4.71 14.78 16 25 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 26 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 27 H -0.27 -5.44 6.52 56.52 0.37 -5.07 16 28 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.09 1.58 6.90 -51.93 -0.36 1.22 16 31 H 0.17 1.03 8.06 -52.48 -0.42 0.61 16 32 H 0.15 1.14 5.22 -52.49 -0.27 0.87 16 33 H 0.06 0.37 7.10 -51.93 -0.37 0.00 16 34 H 0.08 0.74 5.49 -51.93 -0.28 0.46 16 35 H 0.07 0.54 6.54 -51.93 -0.34 0.20 16 36 H 0.06 0.40 7.67 -51.93 -0.40 0.00 16 37 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.03 0.29 6.87 -51.93 -0.36 -0.07 16 40 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.35 6.22 7.56 -39.29 -0.30 5.92 16 42 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 44 H 0.37 7.83 5.76 -40.82 -0.24 7.59 16 45 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 377.75 15.07 5.69 5.69 Total: -1.00 -35.45 377.75 -8.16 -43.61 By element: Atomic # 1 Polarization: 21.32 SS G_CDS: -6.21 Total: 15.11 kcal Atomic # 6 Polarization: 5.22 SS G_CDS: -0.31 Total: 4.91 kcal Atomic # 7 Polarization: -58.36 SS G_CDS: -0.31 Total: -58.66 kcal Atomic # 8 Polarization: -24.94 SS G_CDS: 0.16 Total: -24.77 kcal Atomic # 14 Polarization: 19.49 SS G_CDS: -4.71 Total: 14.78 kcal Atomic # 16 Polarization: 1.81 SS G_CDS: -2.47 Total: -0.66 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -35.45 -8.16 -43.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715326236.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.579 kcal (2) G-P(sol) polarization free energy of solvation -35.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds