Wall clock time and date at job start Sat Apr 11 2020 05:38:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.33813 * 124.51827 * 2 1 4 4 C 1.37474 * 115.09536 * 179.97438 * 3 2 1 5 5 C 1.36649 * 113.30213 * 359.97438 * 4 3 2 6 6 C 1.46579 * 125.46215 * 180.25876 * 5 4 3 7 7 O 1.21699 * 119.99994 * 351.35885 * 6 5 4 8 8 N 1.34773 * 119.99779 * 171.35168 * 6 5 4 9 9 C 1.46501 * 120.00413 * 0.04658 * 8 6 5 10 10 C 1.46505 * 119.99574 * 180.02562 * 8 6 5 11 11 C 1.52998 * 109.47342 * 90.00222 * 10 8 6 12 12 N 1.46898 * 109.47548 * 179.97438 * 11 10 8 13 13 C 1.46904 * 111.00009 * 66.04235 * 12 11 10 14 14 C 1.46899 * 111.00200 * 189.99884 * 12 11 10 15 15 C 1.50699 * 109.46978 * 169.99726 * 14 12 11 16 16 O 1.21293 * 120.00075 * 0.02562 * 15 14 12 17 17 N 1.34777 * 120.00229 * 179.97438 * 15 14 12 18 18 C 1.37093 * 120.00549 * 180.02562 * 17 15 14 19 19 H 1.08008 * 119.99726 * 0.02562 * 18 17 15 20 20 C 1.38944 * 120.00217 * 180.02562 * 18 17 15 21 21 N 1.31419 * 120.00227 * 180.02562 * 20 18 17 22 22 Si 1.86797 * 120.00145 * 0.02562 * 20 18 17 23 23 H 1.48506 * 109.47359 * 89.99850 * 22 20 18 24 24 H 1.48497 * 109.47366 * 209.99781 * 22 20 18 25 25 H 1.48504 * 109.47138 * 329.99777 * 22 20 18 26 26 S 1.70611 * 124.52125 * 179.97438 * 2 1 3 27 27 H 1.08996 * 109.47273 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46957 * 300.01483 * 1 2 3 29 29 H 1.09000 * 109.47153 * 60.01466 * 1 2 3 30 30 H 1.07994 * 122.45539 * 359.96886 * 3 2 1 31 31 H 1.08010 * 123.35053 * 179.97438 * 4 3 2 32 32 H 1.08997 * 109.46744 * 83.43345 * 9 8 6 33 33 H 1.08998 * 109.47001 * 203.43468 * 9 8 6 34 34 H 1.09000 * 109.46859 * 323.43506 * 9 8 6 35 35 H 1.09002 * 109.46838 * 209.99997 * 10 8 6 36 36 H 1.08997 * 109.47475 * 329.99882 * 10 8 6 37 37 H 1.09000 * 109.47464 * 300.00271 * 11 10 8 38 38 H 1.09011 * 109.47313 * 59.99400 * 11 10 8 39 39 H 1.09003 * 109.46648 * 60.00668 * 13 12 11 40 40 H 1.08997 * 109.46970 * 179.97438 * 13 12 11 41 41 H 1.09000 * 109.46994 * 300.00476 * 13 12 11 42 42 H 1.08993 * 109.47387 * 290.00197 * 14 12 11 43 43 H 1.09004 * 109.46876 * 50.00554 * 14 12 11 44 44 H 0.97008 * 119.99527 * 0.02562 * 17 15 14 45 45 H 0.96996 * 119.99859 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2653 1.1025 0.0000 4 6 3.6215 0.8775 0.0006 5 6 3.9493 -0.4491 0.0016 6 6 5.3123 -0.9883 0.0077 7 8 6.2622 -0.2432 -0.1459 8 7 5.5136 -2.3093 0.1837 9 6 4.3701 -3.2064 0.3677 10 6 6.8759 -2.8480 0.1904 11 6 7.4227 -2.8346 1.6193 12 7 8.7885 -3.3754 1.6262 13 6 9.7071 -2.4948 0.8922 14 6 9.2590 -3.5997 2.9996 15 6 10.5506 -4.3756 2.9676 16 8 11.0320 -4.7084 1.9052 17 7 11.1713 -4.6987 4.1195 18 6 12.3465 -5.4040 4.0905 19 1 12.7752 -5.7004 3.1445 20 6 12.9861 -5.7375 5.2780 21 7 14.1130 -6.4132 5.2502 22 14 12.2444 -5.2255 6.9141 23 1 11.3291 -6.2903 7.3977 24 1 13.3296 -5.0176 7.9062 25 1 11.4847 -3.9615 6.7393 26 16 2.4739 -1.4057 0.0006 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5141 0.8899 29 1 -0.3633 0.5136 -0.8901 30 1 1.8429 2.0964 -0.0005 31 1 4.3550 1.6703 0.0002 32 1 3.9625 -3.4797 -0.6055 33 1 4.6945 -4.1057 0.8913 34 1 3.6028 -2.7013 0.9543 35 1 6.8637 -3.8716 -0.1843 36 1 7.5123 -2.2351 -0.4479 37 1 7.4349 -1.8112 1.9941 38 1 6.7863 -3.4476 2.2577 39 1 9.7186 -1.5105 1.3604 40 1 10.7111 -2.9185 0.9133 41 1 9.3732 -2.4018 -0.1412 42 1 9.4238 -2.6397 3.4885 43 1 8.5091 -4.1653 3.5527 44 1 10.7865 -4.4321 4.9691 45 1 14.5592 -6.6464 6.0792 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715508967.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:35 Heat of formation + Delta-G solvation = -13.098033 kcal Electronic energy + Delta-G solvation = -26306.382612 eV Core-core repulsion = 22451.657724 eV Total energy + Delta-G solvation = -3854.724888 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.26613 -38.77253 -38.18280 -36.77457 -35.58279 -33.88427 -32.55843 -31.65638 -30.37083 -27.98940 -27.67970 -27.03688 -25.31275 -24.16917 -23.46918 -21.67818 -20.60288 -19.32533 -18.85592 -18.37548 -18.19183 -16.67853 -16.34187 -16.12557 -15.71702 -15.52774 -15.12952 -14.88737 -14.47514 -14.42245 -14.06498 -13.87158 -13.68208 -13.50548 -13.39343 -13.13545 -13.05270 -12.88754 -12.68213 -12.54683 -12.38424 -12.17840 -12.07292 -11.90296 -11.43740 -11.29031 -11.00281 -10.93706 -10.80187 -10.58138 -10.27472 -9.95895 -9.51768 -9.25341 -8.97963 -8.80252 -8.51722 -8.15848 -7.94742 -6.29132 -3.80312 0.14647 1.08904 1.51306 2.02559 2.56643 2.92178 3.04142 3.08029 3.16251 3.76451 4.02663 4.12134 4.19193 4.35695 4.57239 4.70909 4.80008 4.84221 4.94000 4.96244 4.99390 5.13185 5.17895 5.21104 5.24105 5.40785 5.44280 5.54689 5.58565 5.68870 5.70973 5.81093 5.84077 5.88206 5.97205 6.00383 6.01948 6.18656 6.57430 6.97966 7.17377 7.31245 7.60784 7.82549 8.16905 8.62625 8.97538 9.44764 9.86141 10.84028 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.025235 B = 0.001907 C = 0.001864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.300793 B =14675.965304 C =15016.623388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.222 4.222 3 C -0.160 4.160 4 C -0.047 4.047 5 C -0.275 4.275 6 C 0.588 3.412 7 O -0.525 6.525 8 N -0.611 5.611 9 C 0.061 3.939 10 C 0.120 3.880 11 C 0.041 3.959 12 N -0.516 5.516 13 C 0.019 3.981 14 C 0.044 3.956 15 C 0.454 3.546 16 O -0.558 6.558 17 N -0.592 5.592 18 C -0.303 4.303 19 H 0.120 0.880 20 C 0.041 3.959 21 N -0.882 5.882 22 Si 0.879 3.121 23 H -0.271 1.271 24 H -0.277 1.277 25 H -0.270 1.270 26 S 0.225 5.775 27 H 0.067 0.933 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.139 0.861 31 H 0.151 0.849 32 H 0.069 0.931 33 H 0.096 0.904 34 H 0.075 0.925 35 H 0.092 0.908 36 H 0.090 0.910 37 H 0.036 0.964 38 H 0.073 0.927 39 H 0.017 0.983 40 H 0.097 0.903 41 H 0.063 0.937 42 H 0.049 0.951 43 H 0.088 0.912 44 H 0.370 0.630 45 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.835 11.948 -8.081 34.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.341 4.341 3 C -0.190 4.190 4 C -0.081 4.081 5 C -0.395 4.395 6 C 0.376 3.624 7 O -0.403 6.403 8 N -0.344 5.344 9 C -0.084 4.084 10 C -0.002 4.002 11 C -0.089 4.089 12 N -0.240 5.240 13 C -0.129 4.129 14 C -0.088 4.088 15 C 0.240 3.760 16 O -0.440 6.440 17 N -0.232 5.232 18 C -0.432 4.432 19 H 0.138 0.862 20 C -0.162 4.162 21 N -0.522 5.522 22 Si 0.706 3.294 23 H -0.196 1.196 24 H -0.202 1.202 25 H -0.196 1.196 26 S 0.494 5.506 27 H 0.086 0.914 28 H 0.096 0.904 29 H 0.096 0.904 30 H 0.157 0.843 31 H 0.169 0.831 32 H 0.087 0.913 33 H 0.115 0.885 34 H 0.093 0.907 35 H 0.111 0.889 36 H 0.109 0.891 37 H 0.054 0.946 38 H 0.091 0.909 39 H 0.036 0.964 40 H 0.115 0.885 41 H 0.082 0.918 42 H 0.067 0.933 43 H 0.107 0.893 44 H 0.202 0.798 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -30.159 10.015 -9.025 33.035 hybrid contribution -0.327 2.736 1.992 3.400 sum -30.487 12.751 -7.033 33.786 Atomic orbital electron populations 1.20371 0.87727 1.03005 1.03233 1.24907 1.02082 1.00390 1.06695 1.19905 0.92579 0.99645 1.06830 1.20739 0.96240 0.95184 0.95906 1.24528 0.96672 0.98153 1.20122 1.17037 0.86922 0.81802 0.76669 1.90852 1.42164 1.57542 1.49706 1.47664 1.07893 1.06659 1.72168 1.22078 0.88364 0.95396 1.02554 1.21544 0.80714 1.00390 0.97560 1.22447 0.90875 0.98477 0.97091 1.61526 1.00885 1.47588 1.13997 1.22607 0.99349 0.93371 0.97539 1.21890 0.97459 0.99412 0.89991 1.19624 0.86593 0.85129 0.84692 1.90526 1.67089 1.56857 1.29487 1.42214 1.23196 1.51473 1.06277 1.19428 0.97278 1.29691 0.96816 0.86249 1.25031 0.95999 0.97166 0.97990 1.69624 1.16217 1.38248 1.28124 0.86679 0.79531 0.78982 0.84233 1.19623 1.20216 1.19553 1.83529 0.93285 1.05858 1.67958 0.91366 0.90423 0.90386 0.84276 0.83101 0.91275 0.88512 0.90729 0.88934 0.89128 0.94602 0.90883 0.96443 0.88495 0.91811 0.93330 0.89340 0.79751 0.91654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.34 10.33 36.01 0.37 0.03 16 2 C -0.22 -1.48 6.28 -35.86 -0.23 -1.71 16 3 C -0.16 -1.20 10.00 -41.41 -0.41 -1.62 16 4 C -0.05 -0.45 10.02 -40.43 -0.41 -0.85 16 5 C -0.27 -2.77 6.24 -36.79 -0.23 -3.00 16 6 C 0.59 7.34 7.64 -12.90 -0.10 7.24 16 7 O -0.52 -8.46 16.43 5.19 0.09 -8.37 16 8 N -0.61 -6.35 2.87 -183.16 -0.53 -6.88 16 9 C 0.06 0.40 8.92 59.85 0.53 0.94 16 10 C 0.12 1.41 5.30 -4.04 -0.02 1.39 16 11 C 0.04 0.53 5.28 -3.83 -0.02 0.51 16 12 N -0.52 -8.50 4.50 -244.37 -1.10 -9.60 16 13 C 0.02 0.32 8.96 60.07 0.54 0.86 16 14 C 0.04 0.76 5.45 -4.98 -0.03 0.73 16 15 C 0.45 10.41 7.47 -10.99 -0.08 10.33 16 16 O -0.56 -14.90 13.91 5.55 0.08 -14.82 16 17 N -0.59 -14.22 5.09 -10.96 -0.06 -14.28 16 18 C -0.30 -8.62 10.16 -14.94 -0.15 -8.77 16 19 H 0.12 3.87 7.39 -52.48 -0.39 3.48 16 20 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 21 N -0.88 -25.88 13.96 55.50 0.77 -25.11 16 22 Si 0.88 19.50 27.74 -169.99 -4.71 14.79 16 23 H -0.27 -5.87 7.11 56.52 0.40 -5.46 16 24 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 25 H -0.27 -5.49 6.52 56.52 0.37 -5.12 16 26 S 0.23 1.50 17.82 -107.50 -1.92 -0.42 16 27 H 0.07 0.21 8.11 -51.93 -0.42 -0.21 16 28 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.14 0.79 8.06 -52.49 -0.42 0.37 16 31 H 0.15 1.41 8.06 -52.48 -0.42 0.99 16 32 H 0.07 0.36 7.76 -51.93 -0.40 -0.04 16 33 H 0.10 0.51 8.02 -51.93 -0.42 0.09 16 34 H 0.08 0.44 4.61 -23.21 -0.11 0.34 16 35 H 0.09 0.98 8.07 -51.93 -0.42 0.56 16 36 H 0.09 1.22 5.83 -51.93 -0.30 0.92 16 37 H 0.04 0.51 8.12 -51.93 -0.42 0.09 16 38 H 0.07 0.84 7.93 -51.92 -0.41 0.43 16 39 H 0.02 0.28 8.14 -51.93 -0.42 -0.14 16 40 H 0.10 1.95 5.82 -51.93 -0.30 1.65 16 41 H 0.06 0.97 6.47 -51.93 -0.34 0.64 16 42 H 0.05 0.78 8.12 -51.93 -0.42 0.36 16 43 H 0.09 1.31 7.93 -51.93 -0.41 0.90 16 44 H 0.37 7.83 5.76 -40.82 -0.24 7.59 16 45 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 379.41 15.07 5.72 5.72 Total: -1.00 -35.22 379.41 -8.27 -43.48 By element: Atomic # 1 Polarization: 14.66 SS G_CDS: -6.28 Total: 8.38 kcal Atomic # 6 Polarization: 7.43 SS G_CDS: -0.33 Total: 7.10 kcal Atomic # 7 Polarization: -54.95 SS G_CDS: -0.91 Total: -55.86 kcal Atomic # 8 Polarization: -23.36 SS G_CDS: 0.16 Total: -23.19 kcal Atomic # 14 Polarization: 19.50 SS G_CDS: -4.71 Total: 14.79 kcal Atomic # 16 Polarization: 1.50 SS G_CDS: -1.92 Total: -0.42 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -35.22 -8.27 -43.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715508967.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.384 kcal (2) G-P(sol) polarization free energy of solvation -35.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds