Wall clock time and date at job start Sat Apr 11 2020 05:38:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.33813 * 124.51827 * 2 1 4 4 C 1.37474 * 115.09536 * 179.97438 * 3 2 1 5 5 C 1.36649 * 113.30213 * 359.97438 * 4 3 2 6 6 C 1.46579 * 125.46215 * 180.25876 * 5 4 3 7 7 O 1.21699 * 119.99994 * 351.35885 * 6 5 4 8 8 N 1.34773 * 119.99779 * 171.35168 * 6 5 4 9 9 C 1.46501 * 120.00413 * 0.04658 * 8 6 5 10 10 C 1.46505 * 119.99574 * 180.02562 * 8 6 5 11 11 C 1.52998 * 109.47342 * 90.00222 * 10 8 6 12 12 N 1.46898 * 109.47548 * 179.97438 * 11 10 8 13 13 C 1.46904 * 111.00009 * 66.04235 * 12 11 10 14 14 C 1.46899 * 111.00200 * 189.99884 * 12 11 10 15 15 C 1.50699 * 109.46978 * 169.99726 * 14 12 11 16 16 O 1.21293 * 120.00075 * 0.02562 * 15 14 12 17 17 N 1.34777 * 120.00229 * 179.97438 * 15 14 12 18 18 C 1.37093 * 120.00549 * 180.02562 * 17 15 14 19 19 H 1.08008 * 119.99726 * 0.02562 * 18 17 15 20 20 C 1.38944 * 120.00217 * 180.02562 * 18 17 15 21 21 N 1.31419 * 120.00227 * 180.02562 * 20 18 17 22 22 Si 1.86797 * 120.00145 * 0.02562 * 20 18 17 23 23 H 1.48506 * 109.47359 * 89.99850 * 22 20 18 24 24 H 1.48497 * 109.47366 * 209.99781 * 22 20 18 25 25 H 1.48504 * 109.47138 * 329.99777 * 22 20 18 26 26 S 1.70611 * 124.52125 * 179.97438 * 2 1 3 27 27 H 1.08996 * 109.47273 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46957 * 300.01483 * 1 2 3 29 29 H 1.09000 * 109.47153 * 60.01466 * 1 2 3 30 30 H 1.07994 * 122.45539 * 359.96886 * 3 2 1 31 31 H 1.08010 * 123.35053 * 179.97438 * 4 3 2 32 32 H 1.08997 * 109.46744 * 83.43345 * 9 8 6 33 33 H 1.08998 * 109.47001 * 203.43468 * 9 8 6 34 34 H 1.09000 * 109.46859 * 323.43506 * 9 8 6 35 35 H 1.09002 * 109.46838 * 209.99997 * 10 8 6 36 36 H 1.08997 * 109.47475 * 329.99882 * 10 8 6 37 37 H 1.09000 * 109.47464 * 300.00271 * 11 10 8 38 38 H 1.09011 * 109.47313 * 59.99400 * 11 10 8 39 39 H 1.09003 * 109.46648 * 60.00668 * 13 12 11 40 40 H 1.08997 * 109.46970 * 179.97438 * 13 12 11 41 41 H 1.09000 * 109.46994 * 300.00476 * 13 12 11 42 42 H 1.08993 * 109.47387 * 290.00197 * 14 12 11 43 43 H 1.09004 * 109.46876 * 50.00554 * 14 12 11 44 44 H 0.97008 * 119.99527 * 0.02562 * 17 15 14 45 45 H 0.96996 * 119.99859 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2653 1.1025 0.0000 4 6 3.6215 0.8775 0.0006 5 6 3.9493 -0.4491 0.0016 6 6 5.3123 -0.9883 0.0077 7 8 6.2622 -0.2432 -0.1459 8 7 5.5136 -2.3093 0.1837 9 6 4.3701 -3.2064 0.3677 10 6 6.8759 -2.8480 0.1904 11 6 7.4227 -2.8346 1.6193 12 7 8.7885 -3.3754 1.6262 13 6 9.7071 -2.4948 0.8922 14 6 9.2590 -3.5997 2.9996 15 6 10.5506 -4.3756 2.9676 16 8 11.0320 -4.7084 1.9052 17 7 11.1713 -4.6987 4.1195 18 6 12.3465 -5.4040 4.0905 19 1 12.7752 -5.7004 3.1445 20 6 12.9861 -5.7375 5.2780 21 7 14.1130 -6.4132 5.2502 22 14 12.2444 -5.2255 6.9141 23 1 11.3291 -6.2903 7.3977 24 1 13.3296 -5.0176 7.9062 25 1 11.4847 -3.9615 6.7393 26 16 2.4739 -1.4057 0.0006 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5141 0.8899 29 1 -0.3633 0.5136 -0.8901 30 1 1.8429 2.0964 -0.0005 31 1 4.3550 1.6703 0.0002 32 1 3.9625 -3.4797 -0.6055 33 1 4.6945 -4.1057 0.8913 34 1 3.6028 -2.7013 0.9543 35 1 6.8637 -3.8716 -0.1843 36 1 7.5123 -2.2351 -0.4479 37 1 7.4349 -1.8112 1.9941 38 1 6.7863 -3.4476 2.2577 39 1 9.7186 -1.5105 1.3604 40 1 10.7111 -2.9185 0.9133 41 1 9.3732 -2.4018 -0.1412 42 1 9.4238 -2.6397 3.4885 43 1 8.5091 -4.1653 3.5527 44 1 10.7865 -4.4321 4.9691 45 1 14.5592 -6.6464 6.0792 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715508967.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:34 Heat of formation + Delta-G solvation = -39.536820 kcal Electronic energy + Delta-G solvation = -26307.529084 eV Core-core repulsion = 22451.657724 eV Total energy + Delta-G solvation = -3855.871360 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.15838 -40.46646 -38.85924 -38.06724 -36.60670 -35.87501 -33.74950 -33.12494 -31.35323 -29.38711 -28.36345 -27.88447 -26.81252 -25.42397 -24.23328 -22.75355 -21.49942 -21.25035 -20.17572 -19.52960 -19.07488 -17.89785 -17.48215 -16.91572 -16.85034 -16.73535 -16.54589 -16.11934 -15.77707 -15.49715 -15.13344 -14.91200 -14.76940 -14.50719 -14.31453 -14.26020 -14.13635 -13.97196 -13.74344 -13.61430 -13.27144 -13.23764 -13.07380 -12.85065 -12.68955 -12.62449 -12.55319 -12.40376 -11.97881 -11.89513 -11.46760 -11.42966 -11.19075 -10.43065 -10.22651 -10.00824 -9.55601 -9.37661 -9.30519 -8.40320 -6.00899 -0.50132 0.50111 0.95413 1.30597 1.35651 1.36184 1.44484 1.75151 1.96000 2.11859 2.23466 2.66709 3.14737 3.25032 3.48385 3.89176 3.92386 4.03858 4.06904 4.11600 4.30040 4.32858 4.39491 4.40671 4.45076 4.47618 4.55920 4.61546 4.68726 4.75392 4.76279 4.77084 4.87387 5.08377 5.10201 5.15583 5.22259 5.33492 5.43947 5.53664 5.84809 5.96929 6.08473 6.18808 6.60588 6.89414 6.95836 7.40581 7.97803 8.77274 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.025235 B = 0.001907 C = 0.001864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.300793 B =14675.965304 C =15016.623388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C -0.219 4.219 3 C -0.174 4.174 4 C -0.056 4.056 5 C -0.314 4.314 6 C 0.581 3.419 7 O -0.577 6.577 8 N -0.606 5.606 9 C 0.053 3.947 10 C 0.124 3.876 11 C 0.050 3.950 12 N -0.529 5.529 13 C 0.027 3.973 14 C 0.054 3.946 15 C 0.453 3.547 16 O -0.603 6.603 17 N -0.592 5.592 18 C -0.326 4.326 19 H 0.056 0.944 20 C -0.015 4.015 21 N -0.934 5.934 22 Si 0.964 3.036 23 H -0.254 1.254 24 H -0.276 1.276 25 H -0.234 1.234 26 S 0.284 5.716 27 H 0.081 0.919 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.154 0.846 31 H 0.138 0.862 32 H 0.086 0.914 33 H 0.117 0.883 34 H 0.083 0.917 35 H 0.108 0.892 36 H 0.066 0.934 37 H 0.025 0.975 38 H 0.100 0.900 39 H 0.022 0.978 40 H 0.059 0.941 41 H 0.074 0.926 42 H 0.071 0.929 43 H 0.127 0.873 44 H 0.389 0.611 45 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -35.590 12.288 -6.095 38.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.338 4.338 3 C -0.203 4.203 4 C -0.091 4.091 5 C -0.433 4.433 6 C 0.371 3.629 7 O -0.459 6.459 8 N -0.338 5.338 9 C -0.091 4.091 10 C 0.001 3.999 11 C -0.079 4.079 12 N -0.254 5.254 13 C -0.121 4.121 14 C -0.077 4.077 15 C 0.240 3.760 16 O -0.487 6.487 17 N -0.234 5.234 18 C -0.456 4.456 19 H 0.074 0.926 20 C -0.214 4.214 21 N -0.575 5.575 22 Si 0.784 3.216 23 H -0.179 1.179 24 H -0.201 1.201 25 H -0.158 1.158 26 S 0.553 5.447 27 H 0.100 0.900 28 H 0.106 0.894 29 H 0.107 0.893 30 H 0.172 0.828 31 H 0.156 0.844 32 H 0.104 0.896 33 H 0.135 0.865 34 H 0.101 0.899 35 H 0.126 0.874 36 H 0.085 0.915 37 H 0.043 0.957 38 H 0.118 0.882 39 H 0.040 0.960 40 H 0.078 0.922 41 H 0.093 0.907 42 H 0.089 0.911 43 H 0.145 0.855 44 H 0.224 0.776 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -34.973 10.337 -7.047 37.143 hybrid contribution 1.095 2.586 1.213 3.059 sum -33.878 12.923 -5.834 36.725 Atomic orbital electron populations 1.20517 0.85561 1.04258 1.04233 1.25390 1.03654 1.00263 1.04472 1.20015 0.91714 1.00911 1.07707 1.20851 0.97161 0.95022 0.96036 1.24464 0.97159 0.99208 1.22514 1.17451 0.87442 0.82122 0.75919 1.90810 1.43938 1.58890 1.52294 1.47710 1.08336 1.06553 1.71197 1.22387 0.87289 0.95375 1.04035 1.21406 0.81346 1.00645 0.96484 1.22453 0.89038 0.98123 0.98297 1.61479 1.02242 1.48055 1.13583 1.22430 0.97725 0.93295 0.98684 1.21848 0.94840 0.99836 0.91160 1.20795 0.87785 0.83850 0.83543 1.90518 1.68659 1.58252 1.31259 1.42029 1.22135 1.51569 1.07669 1.18998 0.99589 1.31909 0.95071 0.92583 1.26099 0.96067 0.96351 1.02866 1.69807 1.18195 1.39580 1.29933 0.85374 0.79034 0.80365 0.76802 1.17858 1.20124 1.15770 1.83155 0.90488 1.04528 1.66508 0.90020 0.89350 0.89343 0.82794 0.84377 0.89582 0.86486 0.89929 0.87430 0.91534 0.95692 0.88170 0.95979 0.92233 0.90717 0.91142 0.85527 0.77566 0.91182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.40 10.33 71.24 0.74 0.34 16 2 C -0.22 -2.33 6.28 24.68 0.15 -2.17 16 3 C -0.17 -2.37 10.00 21.08 0.21 -2.16 16 4 C -0.06 -1.07 10.02 21.72 0.22 -0.85 16 5 C -0.31 -6.12 6.24 24.08 0.15 -5.97 16 6 C 0.58 14.49 7.64 86.42 0.66 15.15 16 7 O -0.58 -19.48 16.43 -4.35 -0.07 -19.56 16 8 N -0.61 -11.70 2.87 -851.63 -2.45 -14.15 16 9 C 0.05 0.52 8.92 127.77 1.14 1.66 16 10 C 0.12 2.77 5.30 86.38 0.46 3.22 16 11 C 0.05 1.19 5.28 86.30 0.46 1.64 16 12 N -0.53 -16.72 4.50 -927.04 -4.17 -20.89 16 13 C 0.03 0.92 8.96 127.69 1.14 2.07 16 14 C 0.05 1.74 5.45 85.56 0.47 2.21 16 15 C 0.45 20.77 7.47 87.66 0.66 21.42 16 16 O -0.60 -33.58 13.91 -3.07 -0.04 -33.62 16 17 N -0.59 -28.25 5.09 -306.98 -1.56 -29.81 16 18 C -0.33 -19.28 10.16 84.04 0.85 -18.42 16 19 H 0.06 3.94 7.39 -2.91 -0.02 3.91 16 20 C -0.02 -0.86 5.50 84.92 0.47 -0.39 16 21 N -0.93 -56.69 13.96 21.66 0.30 -56.39 16 22 Si 0.96 39.08 27.74 68.60 1.90 40.98 16 23 H -0.25 -9.67 7.11 99.48 0.71 -8.96 16 24 H -0.28 -11.15 7.11 99.48 0.71 -10.44 16 25 H -0.23 -8.08 6.52 99.48 0.65 -7.43 16 26 S 0.28 2.99 17.82 -56.49 -1.01 1.98 16 27 H 0.08 0.17 8.11 -2.39 -0.02 0.15 16 28 H 0.09 0.27 8.14 -2.39 -0.02 0.25 16 29 H 0.09 0.28 8.14 -2.39 -0.02 0.26 16 30 H 0.15 1.51 8.06 -2.91 -0.02 1.49 16 31 H 0.14 2.81 8.06 -2.91 -0.02 2.78 16 32 H 0.09 0.60 7.76 -2.39 -0.02 0.58 16 33 H 0.12 0.74 8.02 -2.39 -0.02 0.72 16 34 H 0.08 0.70 4.61 -20.65 -0.10 0.60 16 35 H 0.11 2.07 8.07 -2.39 -0.02 2.05 16 36 H 0.07 1.82 5.83 -2.39 -0.01 1.81 16 37 H 0.02 0.67 8.12 -2.39 -0.02 0.65 16 38 H 0.10 1.87 7.93 -2.38 -0.02 1.86 16 39 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 40 H 0.06 2.51 5.82 -2.39 -0.01 2.49 16 41 H 0.07 2.35 6.47 -2.39 -0.02 2.34 16 42 H 0.07 2.02 8.12 -2.39 -0.02 2.00 16 43 H 0.13 3.16 7.93 -2.38 -0.02 3.15 16 44 H 0.39 15.38 5.76 -92.70 -0.53 14.85 16 45 H 0.28 15.45 8.31 -92.71 -0.77 14.68 16 Total: -1.00 -84.23 379.41 1.01 -83.22 By element: Atomic # 1 Polarization: 30.15 SS G_CDS: 0.34 Total: 30.49 kcal Atomic # 6 Polarization: 9.98 SS G_CDS: 7.77 Total: 17.75 kcal Atomic # 7 Polarization: -113.37 SS G_CDS: -7.88 Total: -121.25 kcal Atomic # 8 Polarization: -53.06 SS G_CDS: -0.11 Total: -53.18 kcal Atomic # 14 Polarization: 39.08 SS G_CDS: 1.90 Total: 40.98 kcal Atomic # 16 Polarization: 2.99 SS G_CDS: -1.01 Total: 1.98 kcal Total: -84.23 1.01 -83.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715508967.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.681 kcal (2) G-P(sol) polarization free energy of solvation -84.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds