Wall clock time and date at job start Sat Apr 11 2020 05:39:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33815 * 124.52023 * 2 1 4 4 C 1.37476 * 115.10156 * 180.02562 * 3 2 1 5 5 C 1.36655 * 113.29394 * 359.97438 * 4 3 2 6 6 C 1.46579 * 125.45546 * 180.02562 * 5 4 3 7 7 O 1.21700 * 120.00292 * 359.97438 * 6 5 4 8 8 N 1.34778 * 119.99952 * 179.97438 * 6 5 4 9 9 C 1.46496 * 120.00092 * 179.97438 * 8 6 5 10 10 H 1.09001 * 109.46971 * 35.00388 * 9 8 6 11 11 C 1.52996 * 109.47311 * 275.00124 * 9 8 6 12 12 C 1.53005 * 109.46887 * 155.00094 * 9 8 6 13 13 N 1.46895 * 109.47198 * 304.99759 * 12 9 8 14 14 C 1.46894 * 111.00236 * 293.95688 * 13 12 9 15 15 C 1.46899 * 110.99973 * 170.00100 * 13 12 9 16 16 C 1.50707 * 109.47374 * 190.00233 * 15 13 12 17 17 O 1.21289 * 119.99314 * 359.97438 * 16 15 13 18 18 N 1.34769 * 119.99910 * 180.02562 * 16 15 13 19 19 C 1.37098 * 119.99537 * 180.02562 * 18 16 15 20 20 H 1.08004 * 120.00580 * 0.02562 * 19 18 16 21 21 C 1.38950 * 119.99935 * 179.97438 * 19 18 16 22 22 N 1.31411 * 120.00089 * 359.97438 * 21 19 18 23 23 Si 1.86804 * 120.00370 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.46842 * 59.99956 * 23 21 19 25 25 H 1.48493 * 109.47400 * 179.97438 * 23 21 19 26 26 H 1.48496 * 109.46981 * 300.00441 * 23 21 19 27 27 S 1.70618 * 124.52386 * 179.69971 * 2 1 3 28 28 H 1.09002 * 109.47152 * 89.99992 * 1 2 3 29 29 H 1.09001 * 109.46980 * 330.00092 * 1 2 3 30 30 H 1.09004 * 109.47113 * 210.00073 * 1 2 3 31 31 H 1.08000 * 122.45199 * 359.97438 * 3 2 1 32 32 H 1.07992 * 123.35651 * 180.02562 * 4 3 2 33 33 H 0.97001 * 120.00016 * 359.97438 * 8 6 5 34 34 H 1.09007 * 109.46910 * 300.00056 * 11 9 8 35 35 H 1.09000 * 109.47242 * 59.99672 * 11 9 8 36 36 H 1.08995 * 109.47272 * 180.02562 * 11 9 8 37 37 H 1.08993 * 109.46975 * 65.00332 * 12 9 8 38 38 H 1.09000 * 109.46717 * 184.99809 * 12 9 8 39 39 H 1.09003 * 109.47235 * 60.00176 * 14 13 12 40 40 H 1.09005 * 109.47160 * 179.97438 * 14 13 12 41 41 H 1.08998 * 109.46986 * 299.99718 * 14 13 12 42 42 H 1.09004 * 109.46991 * 310.00083 * 15 13 12 43 43 H 1.09000 * 109.47410 * 70.00265 * 15 13 12 44 44 H 0.96995 * 120.00823 * 359.97438 * 18 16 15 45 45 H 0.97000 * 120.00299 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2654 1.1025 0.0000 4 6 3.6216 0.8776 -0.0006 5 6 3.9493 -0.4491 -0.0005 6 6 5.3123 -0.9882 -0.0004 7 8 6.2659 -0.2320 -0.0010 8 7 5.5097 -2.3215 0.0002 9 6 6.8719 -2.8603 -0.0003 10 1 7.5198 -2.2109 0.5884 11 6 7.3916 -2.9318 -1.4376 12 6 6.8656 -4.2633 0.6101 13 7 6.2560 -4.2135 1.9456 14 6 7.0844 -3.4323 2.8737 15 6 6.0158 -5.5663 2.4655 16 6 5.1750 -5.4830 3.7134 17 8 4.8120 -4.4029 4.1290 18 7 4.8273 -6.6086 4.3680 19 6 4.0619 -6.5328 5.5029 20 1 3.7373 -5.5712 5.8722 21 6 3.7030 -7.6933 6.1776 22 7 4.0967 -8.8635 5.7275 23 14 2.6607 -7.5901 7.7244 24 1 1.3620 -6.9451 7.4041 25 1 2.4174 -8.9576 8.2495 26 1 3.3737 -6.7855 8.7488 27 16 2.4740 -1.4057 0.0074 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 0.8900 0.5138 30 1 -0.3633 -0.8900 0.5139 31 1 1.8429 2.0965 -0.0004 32 1 4.3550 1.6702 -0.0002 33 1 4.7497 -2.9243 0.0010 34 1 6.7437 -3.5813 -2.0263 35 1 7.3960 -1.9324 -1.8725 36 1 8.4050 -3.3332 -1.4380 37 1 6.2899 -4.9343 -0.0274 38 1 7.8893 -4.6288 0.6914 39 1 7.1884 -2.4141 2.4989 40 1 6.6097 -3.4112 3.8547 41 1 8.0694 -3.8916 2.9561 42 1 5.4924 -6.1569 1.7135 43 1 6.9690 -6.0398 2.7006 44 1 5.1178 -7.4724 4.0358 45 1 3.8458 -9.6736 6.1983 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716467900.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:10 Heat of formation + Delta-G solvation = -37.400494 kcal Electronic energy + Delta-G solvation = -26925.618542 eV Core-core repulsion = 23069.839820 eV Total energy + Delta-G solvation = -3855.778722 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.90932 -38.66074 -37.90962 -36.84985 -34.69069 -33.76939 -32.34786 -31.25761 -31.02165 -27.99941 -27.29796 -26.90977 -24.82624 -23.83698 -22.81126 -21.71332 -20.40763 -19.28748 -19.11740 -18.04674 -17.83632 -16.42514 -16.12878 -15.93239 -15.37230 -15.10706 -14.75747 -14.72931 -14.55605 -14.10130 -13.99750 -13.78922 -13.56653 -13.41462 -13.23820 -12.88707 -12.67720 -12.43272 -12.14395 -12.11139 -11.99726 -11.98047 -11.78471 -11.50818 -11.35939 -11.23426 -10.97847 -10.91278 -10.72141 -10.44652 -10.21695 -10.00055 -9.46920 -9.09981 -8.69810 -8.65456 -8.45757 -7.98436 -7.87263 -6.42100 -3.82805 0.43959 1.37947 1.80288 2.30805 3.13765 3.19462 3.25218 3.29347 3.29573 3.90106 3.94815 4.23470 4.58803 4.71790 4.86049 4.99405 5.05407 5.12252 5.19553 5.21728 5.24708 5.26450 5.42659 5.42885 5.51467 5.58365 5.67603 5.70946 5.73601 5.84613 5.92621 5.95686 5.98822 6.06438 6.09519 6.26123 6.27690 6.49210 6.59466 7.23828 7.34698 7.54213 7.54697 8.06017 8.22514 8.61808 9.18047 9.54370 10.06506 10.75619 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010076 B = 0.003082 C = 0.002508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2778.345653 B = 9082.313412 C =11160.317130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C -0.201 4.201 3 C -0.159 4.159 4 C -0.057 4.057 5 C -0.266 4.266 6 C 0.595 3.405 7 O -0.541 6.541 8 N -0.701 5.701 9 C 0.148 3.852 10 H 0.090 0.910 11 C -0.162 4.162 12 C 0.041 3.959 13 N -0.516 5.516 14 C 0.021 3.979 15 C 0.045 3.955 16 C 0.444 3.556 17 O -0.575 6.575 18 N -0.565 5.565 19 C -0.298 4.298 20 H 0.102 0.898 21 C 0.023 3.977 22 N -0.903 5.903 23 Si 0.930 3.070 24 H -0.274 1.274 25 H -0.285 1.285 26 H -0.274 1.274 27 S 0.219 5.781 28 H 0.076 0.924 29 H 0.078 0.922 30 H 0.072 0.928 31 H 0.142 0.858 32 H 0.150 0.850 33 H 0.402 0.598 34 H 0.058 0.942 35 H 0.063 0.937 36 H 0.066 0.934 37 H 0.079 0.921 38 H 0.049 0.951 39 H 0.060 0.940 40 H 0.096 0.904 41 H 0.015 0.985 42 H 0.087 0.913 43 H 0.048 0.952 44 H 0.391 0.609 45 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.756 11.414 -16.267 19.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.320 4.320 3 C -0.190 4.190 4 C -0.090 4.090 5 C -0.387 4.387 6 C 0.381 3.619 7 O -0.421 6.421 8 N -0.351 5.351 9 C 0.043 3.957 10 H 0.108 0.892 11 C -0.221 4.221 12 C -0.087 4.087 13 N -0.240 5.240 14 C -0.127 4.127 15 C -0.086 4.086 16 C 0.229 3.771 17 O -0.459 6.459 18 N -0.201 5.201 19 C -0.428 4.428 20 H 0.120 0.880 21 C -0.179 4.179 22 N -0.544 5.544 23 Si 0.757 3.243 24 H -0.199 1.199 25 H -0.210 1.210 26 H -0.199 1.199 27 S 0.486 5.514 28 H 0.095 0.905 29 H 0.096 0.904 30 H 0.091 0.909 31 H 0.159 0.841 32 H 0.168 0.832 33 H 0.237 0.763 34 H 0.077 0.923 35 H 0.082 0.918 36 H 0.085 0.915 37 H 0.098 0.902 38 H 0.067 0.933 39 H 0.079 0.921 40 H 0.114 0.886 41 H 0.033 0.967 42 H 0.105 0.895 43 H 0.066 0.934 44 H 0.225 0.775 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -1.116 11.118 -15.921 19.451 hybrid contribution 0.345 0.238 0.724 0.836 sum -0.772 11.357 -15.198 18.988 Atomic orbital electron populations 1.20398 0.87476 1.03665 1.02916 1.24285 1.01637 0.98096 1.08028 1.19922 0.92647 0.99467 1.06926 1.20693 0.96089 0.95158 0.97051 1.24600 0.97104 0.98102 1.18858 1.16886 0.86666 0.82354 0.75991 1.90792 1.41876 1.58210 1.51199 1.45660 1.09180 1.05950 1.74302 1.20980 0.83617 0.94737 0.96356 0.89189 1.22159 1.01217 1.02665 0.96036 1.22511 0.98719 0.95938 0.91580 1.61564 1.47382 1.13611 1.01395 1.22562 0.93953 0.96963 0.99182 1.21884 0.99183 0.89951 0.97626 1.19723 0.85790 0.85219 0.86363 1.90498 1.58550 1.27852 1.69009 1.41855 1.46758 1.07164 1.24363 1.19641 1.26986 0.94824 1.01355 0.87998 1.25243 0.98347 0.94643 0.99650 1.69600 1.46216 0.97715 1.40893 0.85936 0.80098 0.77107 0.81196 1.19899 1.20996 1.19933 1.83219 0.94028 1.07005 1.67099 0.90503 0.90351 0.90883 0.84060 0.83199 0.76290 0.92276 0.91807 0.91508 0.90224 0.93329 0.92116 0.88570 0.96689 0.89452 0.93442 0.77540 0.91848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.64 10.31 36.01 0.37 -0.27 16 2 C -0.20 -2.06 6.28 -35.86 -0.23 -2.28 16 3 C -0.16 -1.65 9.99 -41.41 -0.41 -2.06 16 4 C -0.06 -0.69 10.01 -40.43 -0.40 -1.09 16 5 C -0.27 -3.57 6.45 -36.79 -0.24 -3.80 16 6 C 0.59 8.89 7.75 -12.90 -0.10 8.79 16 7 O -0.54 -9.49 16.50 5.19 0.09 -9.40 16 8 N -0.70 -9.22 4.80 -55.15 -0.26 -9.49 16 9 C 0.15 1.78 2.35 -67.93 -0.16 1.62 16 10 H 0.09 1.25 6.23 -51.93 -0.32 0.93 16 11 C -0.16 -1.58 9.48 37.16 0.35 -1.23 16 12 C 0.04 0.49 4.52 -3.82 -0.02 0.47 16 13 N -0.52 -8.18 4.22 -244.37 -1.03 -9.21 16 14 C 0.02 0.35 8.96 60.06 0.54 0.89 16 15 C 0.04 0.76 5.45 -4.97 -0.03 0.74 16 16 C 0.44 10.18 7.48 -10.99 -0.08 10.10 16 17 O -0.58 -15.15 13.91 5.55 0.08 -15.07 16 18 N -0.56 -14.01 5.29 -10.96 -0.06 -14.07 16 19 C -0.30 -8.21 9.68 -14.93 -0.14 -8.35 16 20 H 0.10 2.94 7.16 -52.48 -0.38 2.57 16 21 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 22 N -0.90 -24.30 13.05 55.50 0.72 -23.58 16 23 Si 0.93 20.91 29.55 -169.99 -5.02 15.88 16 24 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 25 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 26 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 27 S 0.22 2.49 22.10 -107.50 -2.38 0.12 16 28 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.14 1.13 8.06 -52.49 -0.42 0.71 16 32 H 0.15 1.72 8.06 -52.49 -0.42 1.30 16 33 H 0.40 5.02 7.72 -40.82 -0.31 4.71 16 34 H 0.06 0.51 8.14 -51.92 -0.42 0.09 16 35 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.08 0.83 7.93 -51.93 -0.41 0.42 16 38 H 0.05 0.52 8.12 -51.93 -0.42 0.10 16 39 H 0.06 0.98 6.58 -51.93 -0.34 0.64 16 40 H 0.10 1.96 5.82 -51.93 -0.30 1.65 16 41 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 42 H 0.09 1.31 7.93 -51.93 -0.41 0.90 16 43 H 0.05 0.75 8.12 -51.93 -0.42 0.33 16 44 H 0.39 9.30 7.90 -40.82 -0.32 8.98 16 45 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 LS Contribution 389.88 15.07 5.88 5.88 Total: -1.00 -32.63 389.88 -9.23 -41.85 By element: Atomic # 1 Polarization: 19.65 SS G_CDS: -6.59 Total: 13.06 kcal Atomic # 6 Polarization: 4.68 SS G_CDS: -0.65 Total: 4.03 kcal Atomic # 7 Polarization: -55.72 SS G_CDS: -0.63 Total: -56.35 kcal Atomic # 8 Polarization: -24.63 SS G_CDS: 0.16 Total: -24.47 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.88 kcal Atomic # 16 Polarization: 2.49 SS G_CDS: -2.38 Total: 0.12 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -32.63 -9.23 -41.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716467900.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.453 kcal (2) G-P(sol) polarization free energy of solvation -32.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds