Wall clock time and date at job start Sat Apr 11 2020 05:39:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33815 * 124.52023 * 2 1 4 4 C 1.37476 * 115.10156 * 180.02562 * 3 2 1 5 5 C 1.36655 * 113.29394 * 359.97438 * 4 3 2 6 6 C 1.46579 * 125.45546 * 180.02562 * 5 4 3 7 7 O 1.21700 * 120.00292 * 359.97438 * 6 5 4 8 8 N 1.34778 * 119.99952 * 179.97438 * 6 5 4 9 9 C 1.46496 * 120.00092 * 179.97438 * 8 6 5 10 10 H 1.09001 * 109.46971 * 35.00388 * 9 8 6 11 11 C 1.52996 * 109.47311 * 275.00124 * 9 8 6 12 12 C 1.53005 * 109.46887 * 155.00094 * 9 8 6 13 13 N 1.46895 * 109.47198 * 304.99759 * 12 9 8 14 14 C 1.46894 * 111.00236 * 293.95688 * 13 12 9 15 15 C 1.46899 * 110.99973 * 170.00100 * 13 12 9 16 16 C 1.50707 * 109.47374 * 190.00233 * 15 13 12 17 17 O 1.21289 * 119.99314 * 359.97438 * 16 15 13 18 18 N 1.34769 * 119.99910 * 180.02562 * 16 15 13 19 19 C 1.37098 * 119.99537 * 180.02562 * 18 16 15 20 20 H 1.08004 * 120.00580 * 0.02562 * 19 18 16 21 21 C 1.38950 * 119.99935 * 179.97438 * 19 18 16 22 22 N 1.31411 * 120.00089 * 359.97438 * 21 19 18 23 23 Si 1.86804 * 120.00370 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.46842 * 59.99956 * 23 21 19 25 25 H 1.48493 * 109.47400 * 179.97438 * 23 21 19 26 26 H 1.48496 * 109.46981 * 300.00441 * 23 21 19 27 27 S 1.70618 * 124.52386 * 179.69971 * 2 1 3 28 28 H 1.09002 * 109.47152 * 89.99992 * 1 2 3 29 29 H 1.09001 * 109.46980 * 330.00092 * 1 2 3 30 30 H 1.09004 * 109.47113 * 210.00073 * 1 2 3 31 31 H 1.08000 * 122.45199 * 359.97438 * 3 2 1 32 32 H 1.07992 * 123.35651 * 180.02562 * 4 3 2 33 33 H 0.97001 * 120.00016 * 359.97438 * 8 6 5 34 34 H 1.09007 * 109.46910 * 300.00056 * 11 9 8 35 35 H 1.09000 * 109.47242 * 59.99672 * 11 9 8 36 36 H 1.08995 * 109.47272 * 180.02562 * 11 9 8 37 37 H 1.08993 * 109.46975 * 65.00332 * 12 9 8 38 38 H 1.09000 * 109.46717 * 184.99809 * 12 9 8 39 39 H 1.09003 * 109.47235 * 60.00176 * 14 13 12 40 40 H 1.09005 * 109.47160 * 179.97438 * 14 13 12 41 41 H 1.08998 * 109.46986 * 299.99718 * 14 13 12 42 42 H 1.09004 * 109.46991 * 310.00083 * 15 13 12 43 43 H 1.09000 * 109.47410 * 70.00265 * 15 13 12 44 44 H 0.96995 * 120.00823 * 359.97438 * 18 16 15 45 45 H 0.97000 * 120.00299 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2654 1.1025 0.0000 4 6 3.6216 0.8776 -0.0006 5 6 3.9493 -0.4491 -0.0005 6 6 5.3123 -0.9882 -0.0004 7 8 6.2659 -0.2320 -0.0010 8 7 5.5097 -2.3215 0.0002 9 6 6.8719 -2.8603 -0.0003 10 1 7.5198 -2.2109 0.5884 11 6 7.3916 -2.9318 -1.4376 12 6 6.8656 -4.2633 0.6101 13 7 6.2560 -4.2135 1.9456 14 6 7.0844 -3.4323 2.8737 15 6 6.0158 -5.5663 2.4655 16 6 5.1750 -5.4830 3.7134 17 8 4.8120 -4.4029 4.1290 18 7 4.8273 -6.6086 4.3680 19 6 4.0619 -6.5328 5.5029 20 1 3.7373 -5.5712 5.8722 21 6 3.7030 -7.6933 6.1776 22 7 4.0967 -8.8635 5.7275 23 14 2.6607 -7.5901 7.7244 24 1 1.3620 -6.9451 7.4041 25 1 2.4174 -8.9576 8.2495 26 1 3.3737 -6.7855 8.7488 27 16 2.4740 -1.4057 0.0074 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 0.8900 0.5138 30 1 -0.3633 -0.8900 0.5139 31 1 1.8429 2.0965 -0.0004 32 1 4.3550 1.6702 -0.0002 33 1 4.7497 -2.9243 0.0010 34 1 6.7437 -3.5813 -2.0263 35 1 7.3960 -1.9324 -1.8725 36 1 8.4050 -3.3332 -1.4380 37 1 6.2899 -4.9343 -0.0274 38 1 7.8893 -4.6288 0.6914 39 1 7.1884 -2.4141 2.4989 40 1 6.6097 -3.4112 3.8547 41 1 8.0694 -3.8916 2.9561 42 1 5.4924 -6.1569 1.7135 43 1 6.9690 -6.0398 2.7006 44 1 5.1178 -7.4724 4.0358 45 1 3.8458 -9.6736 6.1983 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716467900.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:09 Heat of formation + Delta-G solvation = -60.644508 kcal Electronic energy + Delta-G solvation = -26926.626478 eV Core-core repulsion = 23069.839820 eV Total energy + Delta-G solvation = -3856.786658 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.02073 -40.27600 -38.90357 -38.13683 -36.11359 -35.52540 -33.26357 -33.19084 -31.97275 -29.48366 -28.14203 -28.01714 -26.63842 -24.73922 -23.98889 -22.79152 -21.46323 -20.93438 -20.20722 -19.81773 -19.00521 -17.83484 -17.31229 -16.93472 -16.67640 -16.55056 -16.25701 -16.01116 -15.76977 -15.58858 -15.11943 -14.98133 -14.83666 -14.66159 -14.17174 -13.96463 -13.65868 -13.57869 -13.42606 -13.25462 -13.09712 -12.92786 -12.88256 -12.80799 -12.69718 -12.65257 -12.44520 -12.38610 -12.12081 -11.85375 -11.73761 -11.42823 -11.15308 -10.26843 -10.14360 -9.96533 -9.59085 -9.53509 -9.21157 -8.44003 -5.91895 -0.48944 0.48266 0.91866 1.40088 1.40424 1.42290 1.52641 2.10378 2.11132 2.24498 2.29908 2.75800 3.23360 3.44698 3.72506 3.83692 3.92524 4.13717 4.21265 4.27941 4.34444 4.40674 4.41495 4.54104 4.54550 4.58676 4.67738 4.69975 4.72544 4.75804 4.79833 4.98239 5.07696 5.08408 5.16589 5.20980 5.28075 5.43043 5.43401 5.48617 5.88520 6.06580 6.18645 6.47539 6.64736 7.13730 7.16849 7.61220 8.17861 8.73184 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010076 B = 0.003082 C = 0.002508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2778.345653 B = 9082.313412 C =11160.317130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C -0.192 4.192 3 C -0.166 4.166 4 C -0.058 4.058 5 C -0.301 4.301 6 C 0.589 3.411 7 O -0.579 6.579 8 N -0.696 5.696 9 C 0.146 3.854 10 H 0.068 0.932 11 C -0.152 4.152 12 C 0.046 3.954 13 N -0.532 5.532 14 C 0.032 3.968 15 C 0.058 3.942 16 C 0.441 3.559 17 O -0.614 6.614 18 N -0.575 5.575 19 C -0.330 4.330 20 H 0.077 0.923 21 C -0.012 4.012 22 N -0.921 5.921 23 Si 0.988 3.012 24 H -0.272 1.272 25 H -0.271 1.271 26 H -0.274 1.274 27 S 0.217 5.783 28 H 0.095 0.905 29 H 0.094 0.906 30 H 0.074 0.926 31 H 0.168 0.832 32 H 0.149 0.851 33 H 0.406 0.594 34 H 0.075 0.925 35 H 0.045 0.955 36 H 0.086 0.914 37 H 0.104 0.896 38 H 0.071 0.929 39 H 0.058 0.942 40 H 0.054 0.946 41 H 0.033 0.967 42 H 0.117 0.883 43 H 0.069 0.931 44 H 0.396 0.604 45 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.496 10.654 -17.444 20.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.313 4.313 3 C -0.196 4.196 4 C -0.092 4.092 5 C -0.421 4.421 6 C 0.377 3.623 7 O -0.462 6.462 8 N -0.345 5.345 9 C 0.041 3.959 10 H 0.086 0.914 11 C -0.211 4.211 12 C -0.081 4.081 13 N -0.256 5.256 14 C -0.117 4.117 15 C -0.073 4.073 16 C 0.229 3.771 17 O -0.499 6.499 18 N -0.213 5.213 19 C -0.460 4.460 20 H 0.095 0.905 21 C -0.211 4.211 22 N -0.562 5.562 23 Si 0.812 3.188 24 H -0.197 1.197 25 H -0.195 1.195 26 H -0.200 1.200 27 S 0.485 5.515 28 H 0.114 0.886 29 H 0.112 0.888 30 H 0.092 0.908 31 H 0.186 0.814 32 H 0.167 0.833 33 H 0.241 0.759 34 H 0.094 0.906 35 H 0.065 0.935 36 H 0.105 0.895 37 H 0.122 0.878 38 H 0.089 0.911 39 H 0.077 0.923 40 H 0.073 0.927 41 H 0.052 0.948 42 H 0.135 0.865 43 H 0.087 0.913 44 H 0.230 0.770 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -1.847 10.321 -17.126 20.080 hybrid contribution 0.549 0.543 1.052 1.305 sum -1.297 10.864 -16.074 19.444 Atomic orbital electron populations 1.20552 0.85211 1.04502 1.04362 1.24729 1.03079 0.97264 1.06186 1.20153 0.91745 1.00843 1.06823 1.20932 0.97213 0.94848 0.96251 1.24607 0.97187 0.99022 1.21276 1.17169 0.87008 0.82684 0.75471 1.90754 1.43111 1.59039 1.53247 1.45707 1.09878 1.05518 1.73436 1.21080 0.82740 0.94391 0.97668 0.91422 1.22075 1.02644 1.02183 0.94192 1.22598 1.00142 0.96134 0.89256 1.61471 1.48442 1.12912 1.02778 1.22331 0.94455 0.97514 0.97362 1.21766 0.99132 0.91157 0.95243 1.20816 0.84952 0.83971 0.87378 1.90484 1.59831 1.29245 1.70386 1.41913 1.47156 1.07948 1.24250 1.19583 1.28900 0.94293 1.03226 0.90510 1.25961 0.99007 0.94078 1.02076 1.69657 1.46615 0.98081 1.41842 0.85056 0.78429 0.77597 0.77675 1.19704 1.19530 1.19966 1.83135 0.93425 1.07682 1.67274 0.88636 0.88771 0.90754 0.81443 0.83290 0.75890 0.90641 0.93535 0.89489 0.87790 0.91123 0.92299 0.92736 0.94814 0.86496 0.91350 0.77031 0.91382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.09 10.31 71.24 0.73 -0.36 16 2 C -0.19 -3.67 6.28 24.68 0.15 -3.51 16 3 C -0.17 -3.24 9.99 21.08 0.21 -3.03 16 4 C -0.06 -1.43 10.01 21.72 0.22 -1.22 16 5 C -0.30 -8.24 6.45 24.08 0.16 -8.09 16 6 C 0.59 18.20 7.75 86.42 0.67 18.87 16 7 O -0.58 -21.25 16.50 -4.35 -0.07 -21.32 16 8 N -0.70 -18.27 4.80 -446.60 -2.14 -20.41 16 9 C 0.15 3.36 2.35 44.99 0.11 3.47 16 10 H 0.07 1.89 6.23 -2.39 -0.01 1.87 16 11 C -0.15 -2.69 9.48 71.98 0.68 -2.01 16 12 C 0.05 0.97 4.52 86.31 0.39 1.36 16 13 N -0.53 -16.16 4.22 -927.06 -3.92 -20.07 16 14 C 0.03 1.06 8.96 127.69 1.14 2.20 16 15 C 0.06 1.86 5.45 85.56 0.47 2.33 16 16 C 0.44 20.35 7.48 87.66 0.66 21.01 16 17 O -0.61 -33.28 13.91 -3.06 -0.04 -33.32 16 18 N -0.57 -28.80 5.29 -306.99 -1.62 -30.42 16 19 C -0.33 -18.53 9.68 84.04 0.81 -17.72 16 20 H 0.08 4.61 7.16 -2.91 -0.02 4.59 16 21 C -0.01 -0.61 5.50 84.93 0.47 -0.14 16 22 N -0.92 -49.10 13.05 21.66 0.28 -48.82 16 23 Si 0.99 42.69 29.55 68.60 2.03 44.72 16 24 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 25 H -0.27 -11.01 7.11 99.48 0.71 -10.31 16 26 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 27 S 0.22 4.88 22.10 -56.49 -1.25 3.63 16 28 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.07 0.93 8.14 -2.38 -0.02 0.91 16 31 H 0.17 2.30 8.06 -2.91 -0.02 2.28 16 32 H 0.15 3.56 8.06 -2.91 -0.02 3.54 16 33 H 0.41 9.95 7.72 -92.71 -0.72 9.23 16 34 H 0.07 1.09 8.14 -2.38 -0.02 1.07 16 35 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 36 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.10 1.73 7.93 -2.39 -0.02 1.72 16 38 H 0.07 1.24 8.12 -2.39 -0.02 1.23 16 39 H 0.06 1.96 6.58 -2.39 -0.02 1.94 16 40 H 0.05 2.29 5.82 -2.38 -0.01 2.28 16 41 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 42 H 0.12 3.12 7.93 -2.39 -0.02 3.10 16 43 H 0.07 1.96 8.12 -2.39 -0.02 1.94 16 44 H 0.40 18.76 7.90 -92.71 -0.73 18.03 16 45 H 0.28 13.88 8.31 -92.71 -0.77 13.11 16 Total: -1.00 -73.14 389.88 -0.29 -73.43 By element: Atomic # 1 Polarization: 39.85 SS G_CDS: -0.42 Total: 39.43 kcal Atomic # 6 Polarization: 6.29 SS G_CDS: 6.87 Total: 13.15 kcal Atomic # 7 Polarization: -112.32 SS G_CDS: -7.40 Total: -119.72 kcal Atomic # 8 Polarization: -54.53 SS G_CDS: -0.11 Total: -54.64 kcal Atomic # 14 Polarization: 42.69 SS G_CDS: 2.03 Total: 44.72 kcal Atomic # 16 Polarization: 4.88 SS G_CDS: -1.25 Total: 3.63 kcal Total: -73.14 -0.29 -73.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716467900.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.786 kcal (2) G-P(sol) polarization free energy of solvation -73.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds