Wall clock time and date at job start Sat Apr 11 2020 05:39:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.39834 * 126.46133 * 2 1 4 4 C 1.35441 * 107.86836 * 180.30331 * 3 2 1 5 5 N 1.35530 * 108.87100 * 359.74258 * 4 3 2 6 6 H 0.97008 * 125.68302 * 180.02562 * 5 4 3 7 7 C 1.37649 * 108.64640 * 359.97438 * 5 4 3 8 8 C 1.46680 * 126.23740 * 179.97438 * 7 5 4 9 9 O 1.21687 * 120.00404 * 180.02562 * 8 7 5 10 10 N 1.34778 * 119.99623 * 0.02989 * 8 7 5 11 11 C 1.46503 * 119.99901 * 179.97438 * 10 8 7 12 12 H 1.09000 * 109.46911 * 35.00466 * 11 10 8 13 13 C 1.52993 * 109.47338 * 275.00452 * 11 10 8 14 14 C 1.52999 * 109.47122 * 154.99830 * 11 10 8 15 15 H 1.08993 * 109.47839 * 295.00651 * 14 11 10 16 16 C 1.53006 * 109.46626 * 55.00582 * 14 11 10 17 17 N 1.46504 * 109.47050 * 174.99941 * 14 11 10 18 18 C 1.34779 * 119.99783 * 155.00084 * 17 14 11 19 19 O 1.21284 * 119.99864 * 0.02562 * 18 17 14 20 20 C 1.50698 * 119.99670 * 180.02562 * 18 17 14 21 21 S 1.81008 * 109.46889 * 180.02562 * 20 18 17 22 22 C 1.76191 * 99.99854 * 179.97438 * 21 20 18 23 23 H 1.08003 * 120.00465 * 0.02562 * 22 21 20 24 24 C 1.38806 * 119.99994 * 179.97438 * 22 21 20 25 25 N 1.31636 * 119.99641 * 0.02562 * 24 22 21 26 26 Si 1.86797 * 120.00000 * 179.97438 * 24 22 21 27 27 H 1.48505 * 109.46946 * 60.00622 * 26 24 22 28 28 H 1.48505 * 109.46943 * 180.02562 * 26 24 22 29 29 H 1.48497 * 109.47438 * 300.00289 * 26 24 22 30 30 H 1.08990 * 109.47291 * 270.13725 * 1 2 3 31 31 H 1.09003 * 109.46983 * 30.13860 * 1 2 3 32 32 H 1.09002 * 109.46845 * 150.13334 * 1 2 3 33 33 H 1.08011 * 126.06027 * 0.02562 * 3 2 1 34 34 H 1.08002 * 125.57053 * 179.70933 * 4 3 2 35 35 H 0.96996 * 120.00668 * 0.02562 * 10 8 7 36 36 H 1.09001 * 109.47333 * 59.99970 * 13 11 10 37 37 H 1.09002 * 109.47330 * 179.97438 * 13 11 10 38 38 H 1.09000 * 109.47130 * 299.99879 * 13 11 10 39 39 H 1.09000 * 109.47050 * 299.99699 * 16 14 11 40 40 H 1.09001 * 109.46801 * 59.99811 * 16 14 11 41 41 H 1.09001 * 109.46998 * 179.97438 * 16 14 11 42 42 H 0.97003 * 120.00173 * 335.01157 * 17 14 11 43 43 H 1.08997 * 109.47117 * 299.99744 * 20 18 17 44 44 H 1.08999 * 109.47222 * 60.00471 * 20 18 17 45 45 H 0.96995 * 119.99754 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3380 1.1246 0.0000 4 6 3.6217 0.6928 -0.0068 5 7 3.6283 -0.6625 -0.0054 6 1 4.4190 -1.2245 -0.0089 7 6 2.3263 -1.1089 0.0031 8 6 1.8898 -2.5093 0.0068 9 8 0.7027 -2.7766 0.0140 10 7 2.8036 -3.4999 0.0024 11 6 2.3677 -4.8986 0.0067 12 1 1.4524 -4.9957 -0.5772 13 6 2.1047 -5.3464 1.4457 14 6 3.4604 -5.7752 -0.6087 15 1 3.5858 -5.5154 -1.6597 16 6 4.7779 -5.5445 0.1343 17 7 3.0767 -7.1846 -0.4963 18 6 3.5741 -8.0895 -1.3626 19 8 4.3396 -7.7370 -2.2348 20 6 3.1789 -9.5392 -1.2473 21 16 4.0068 -10.4949 -2.5425 22 6 3.3842 -12.1031 -2.1813 23 1 2.7004 -12.2450 -1.3575 24 6 3.7718 -13.1875 -2.9563 25 7 4.6048 -13.0144 -3.9607 26 14 3.1123 -14.8926 -2.5728 27 1 1.6311 -14.8861 -2.6801 28 1 3.6747 -15.8698 -3.5394 29 1 3.5071 -15.2776 -1.1941 30 1 -0.3633 0.0025 1.0276 31 1 -0.3633 0.8888 -0.5160 32 1 -0.3633 -0.8912 -0.5118 33 1 2.0136 2.1549 0.0004 34 1 4.4973 1.3251 -0.0130 35 1 3.7499 -3.2869 -0.0029 36 1 1.3262 -4.7220 1.8841 37 1 1.7799 -6.3869 1.4489 38 1 3.0200 -5.2494 2.0296 39 1 5.0633 -4.4959 0.0508 40 1 4.6525 -5.8043 1.1855 41 1 5.5562 -6.1693 -0.3037 42 1 2.4646 -7.4665 0.2014 43 1 3.4751 -9.9199 -0.2699 44 1 2.0989 -9.6315 -1.3613 45 1 4.8759 -13.7723 -4.5020 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001718085454.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:47 Heat of formation + Delta-G solvation = -34.914919 kcal Electronic energy + Delta-G solvation = -26209.611275 eV Core-core repulsion = 22353.940336 eV Total energy + Delta-G solvation = -3855.670939 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.74773 -40.11941 -39.10368 -36.98454 -34.24313 -32.84913 -32.44544 -31.57700 -30.28502 -29.42890 -28.54527 -27.18513 -25.52404 -25.02755 -22.97513 -21.37107 -20.59371 -20.08681 -19.66348 -19.04544 -17.92011 -16.64805 -16.47163 -16.21472 -15.61792 -15.51129 -15.07329 -14.81800 -14.72035 -14.35932 -14.17214 -14.07958 -13.91942 -13.38854 -13.28586 -13.21868 -12.94305 -12.87384 -12.58877 -12.58663 -12.50360 -12.09334 -11.97759 -11.89991 -11.28439 -11.14096 -11.06205 -11.04948 -10.78473 -10.27201 -9.84921 -9.56610 -9.46090 -9.16758 -9.09278 -9.02664 -8.54169 -8.27167 -6.52526 -6.23414 -3.94291 1.09159 2.35291 2.54928 2.69716 3.01132 3.03959 3.08366 3.22518 3.26805 3.30905 3.68323 4.18762 4.24740 4.49858 4.59755 4.61573 4.82127 4.84531 4.94142 5.05239 5.10364 5.11683 5.12967 5.34004 5.40442 5.43031 5.53803 5.58663 5.60309 5.63399 5.74403 5.81738 5.85069 5.85529 5.99436 6.10147 6.10297 6.11635 6.33190 6.53202 6.57286 6.92812 7.12072 7.57446 7.60743 7.83465 8.33253 8.52953 9.21888 10.83945 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.030580 B = 0.001804 C = 0.001767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.423672 B =15513.318079 C =15842.898074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C -0.071 4.071 3 C -0.213 4.213 4 C 0.028 3.972 5 N -0.542 5.542 6 H 0.416 0.584 7 C -0.063 4.063 8 C 0.591 3.409 9 O -0.522 6.522 10 N -0.725 5.725 11 C 0.138 3.862 12 H 0.099 0.901 13 C -0.167 4.167 14 C 0.138 3.862 15 H 0.094 0.906 16 C -0.167 4.167 17 N -0.732 5.732 18 C 0.535 3.465 19 O -0.515 6.515 20 C -0.154 4.154 21 S -0.059 6.059 22 C -0.537 4.537 23 H 0.072 0.928 24 C 0.074 3.926 25 N -0.868 5.868 26 Si 0.919 3.081 27 H -0.274 1.274 28 H -0.283 1.283 29 H -0.274 1.274 30 H 0.066 0.934 31 H 0.062 0.938 32 H 0.080 0.920 33 H 0.143 0.857 34 H 0.172 0.828 35 H 0.394 0.606 36 H 0.066 0.934 37 H 0.069 0.931 38 H 0.063 0.937 39 H 0.055 0.945 40 H 0.064 0.936 41 H 0.072 0.928 42 H 0.399 0.601 43 H 0.090 0.910 44 H 0.091 0.909 45 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.506 27.286 12.776 30.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.080 4.080 3 C -0.237 4.237 4 C -0.108 4.108 5 N -0.138 5.138 6 H 0.253 0.747 7 C -0.175 4.175 8 C 0.379 3.621 9 O -0.398 6.398 10 N -0.378 5.378 11 C 0.033 3.967 12 H 0.117 0.883 13 C -0.226 4.226 14 C 0.031 3.969 15 H 0.112 0.888 16 C -0.226 4.226 17 N -0.388 5.388 18 C 0.321 3.679 19 O -0.389 6.389 20 C -0.305 4.305 21 S 0.167 5.833 22 C -0.685 4.685 23 H 0.091 0.909 24 C -0.136 4.136 25 N -0.503 5.503 26 Si 0.745 3.255 27 H -0.199 1.199 28 H -0.208 1.208 29 H -0.199 1.199 30 H 0.085 0.915 31 H 0.081 0.919 32 H 0.099 0.901 33 H 0.161 0.839 34 H 0.189 0.811 35 H 0.229 0.771 36 H 0.085 0.915 37 H 0.087 0.913 38 H 0.082 0.918 39 H 0.073 0.927 40 H 0.083 0.917 41 H 0.091 0.909 42 H 0.235 0.765 43 H 0.109 0.891 44 H 0.109 0.891 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -1.885 27.427 11.153 29.668 hybrid contribution -0.514 -1.694 1.610 2.393 sum -2.399 25.733 12.763 28.824 Atomic orbital electron populations 1.20362 0.89209 1.03035 1.02258 1.19996 0.95979 0.90761 1.01233 1.20833 0.91835 0.98894 1.12173 1.22029 0.99647 0.82903 1.06222 1.41950 1.07115 1.07349 1.57386 0.74730 1.20197 0.83798 0.93433 1.20111 1.17033 0.85862 0.82971 0.76188 1.90827 1.15921 1.83162 1.49920 1.45962 1.09414 1.05948 1.76479 1.21127 0.98305 0.79632 0.97649 0.88323 1.22250 1.02605 1.01843 0.95879 1.20960 0.93066 0.81567 1.01268 0.88791 1.22268 0.97953 1.01139 1.01213 1.46076 1.50817 1.06703 1.35218 1.20343 0.79859 0.87323 0.80360 1.90702 1.34006 1.80502 1.33706 1.23539 1.05443 0.94338 1.07153 1.85383 1.60215 1.01695 1.35961 1.22828 1.33210 0.93061 1.19386 0.90943 1.24995 0.94817 0.99283 0.94468 1.70007 1.31241 1.31848 1.17197 0.86220 0.79159 0.81810 0.78292 1.19911 1.20802 1.19946 0.91489 0.91940 0.90072 0.83898 0.81115 0.77087 0.91494 0.91251 0.91780 0.92663 0.91732 0.90895 0.76500 0.89143 0.89095 0.92115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.83 9.83 36.01 0.35 -0.47 16 2 C -0.07 -0.67 6.21 -104.16 -0.65 -1.32 16 3 C -0.21 -1.55 10.76 -39.98 -0.43 -1.98 16 4 C 0.03 0.15 11.89 -16.92 -0.20 -0.05 16 5 N -0.54 -3.18 5.99 -9.39 -0.06 -3.23 16 6 H 0.42 1.23 8.19 -40.82 -0.33 0.89 16 7 C -0.06 -0.58 7.06 -81.98 -0.58 -1.16 16 8 C 0.59 6.24 7.75 -12.85 -0.10 6.14 16 9 O -0.52 -7.14 14.47 5.20 0.08 -7.07 16 10 N -0.72 -5.91 4.98 -55.12 -0.27 -6.19 16 11 C 0.14 1.27 2.62 -67.93 -0.18 1.09 16 12 H 0.10 1.10 7.58 -51.93 -0.39 0.71 16 13 C -0.17 -1.34 9.00 37.15 0.33 -1.01 16 14 C 0.14 1.46 2.62 -67.93 -0.18 1.28 16 15 H 0.09 1.20 7.58 -51.93 -0.39 0.81 16 16 C -0.17 -1.51 9.00 37.16 0.33 -1.17 16 17 N -0.73 -9.07 4.99 -53.80 -0.27 -9.34 16 18 C 0.53 9.50 7.81 -10.99 -0.09 9.41 16 19 O -0.52 -11.15 15.53 5.55 0.09 -11.06 16 20 C -0.15 -3.02 6.16 36.00 0.22 -2.80 16 21 S -0.06 -1.58 20.57 -107.50 -2.21 -3.79 16 22 C -0.54 -15.15 9.50 30.94 0.29 -14.86 16 23 H 0.07 1.93 7.80 -52.48 -0.41 1.52 16 24 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 25 N -0.87 -26.01 13.22 55.49 0.73 -25.28 16 26 Si 0.92 21.29 29.55 -169.99 -5.02 16.27 16 27 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 28 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 29 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 30 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.08 0.88 6.49 -51.93 -0.34 0.54 16 33 H 0.14 0.78 8.06 -52.48 -0.42 0.36 16 34 H 0.17 0.35 8.06 -52.49 -0.42 -0.07 16 35 H 0.39 2.25 5.70 -40.82 -0.23 2.01 16 36 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.07 0.50 6.29 -51.93 -0.33 0.17 16 38 H 0.06 0.46 6.56 -51.93 -0.34 0.11 16 39 H 0.05 0.34 6.29 -51.93 -0.33 0.01 16 40 H 0.06 0.52 6.56 -51.93 -0.34 0.18 16 41 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 42 H 0.40 3.93 6.58 -40.82 -0.27 3.66 16 43 H 0.09 1.62 8.14 -51.92 -0.42 1.20 16 44 H 0.09 1.65 8.14 -51.92 -0.42 1.23 16 45 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 385.23 15.07 5.81 5.81 Total: -1.00 -36.77 385.23 -8.31 -45.08 By element: Atomic # 1 Polarization: 9.92 SS G_CDS: -6.22 Total: 3.70 kcal Atomic # 6 Polarization: -3.94 SS G_CDS: -0.96 Total: -4.90 kcal Atomic # 7 Polarization: -44.17 SS G_CDS: 0.13 Total: -44.04 kcal Atomic # 8 Polarization: -18.29 SS G_CDS: 0.16 Total: -18.13 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Atomic # 16 Polarization: -1.58 SS G_CDS: -2.21 Total: -3.79 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -36.77 -8.31 -45.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001718085454.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.169 kcal (2) G-P(sol) polarization free energy of solvation -36.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds