Wall clock time and date at job start Sat Apr 11 2020 05:39:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.39834 * 126.46133 * 2 1 4 4 C 1.35441 * 107.86836 * 180.30331 * 3 2 1 5 5 N 1.35530 * 108.87100 * 359.74258 * 4 3 2 6 6 H 0.97008 * 125.68302 * 180.02562 * 5 4 3 7 7 C 1.37649 * 108.64640 * 359.97438 * 5 4 3 8 8 C 1.46680 * 126.23740 * 179.97438 * 7 5 4 9 9 O 1.21687 * 120.00404 * 180.02562 * 8 7 5 10 10 N 1.34778 * 119.99623 * 0.02989 * 8 7 5 11 11 C 1.46503 * 119.99901 * 179.97438 * 10 8 7 12 12 H 1.09000 * 109.46911 * 35.00466 * 11 10 8 13 13 C 1.52993 * 109.47338 * 275.00452 * 11 10 8 14 14 C 1.52999 * 109.47122 * 154.99830 * 11 10 8 15 15 H 1.08993 * 109.47839 * 295.00651 * 14 11 10 16 16 C 1.53006 * 109.46626 * 55.00582 * 14 11 10 17 17 N 1.46504 * 109.47050 * 174.99941 * 14 11 10 18 18 C 1.34779 * 119.99783 * 155.00084 * 17 14 11 19 19 O 1.21284 * 119.99864 * 0.02562 * 18 17 14 20 20 C 1.50698 * 119.99670 * 180.02562 * 18 17 14 21 21 S 1.81008 * 109.46889 * 180.02562 * 20 18 17 22 22 C 1.76191 * 99.99854 * 179.97438 * 21 20 18 23 23 H 1.08003 * 120.00465 * 0.02562 * 22 21 20 24 24 C 1.38806 * 119.99994 * 179.97438 * 22 21 20 25 25 N 1.31636 * 119.99641 * 0.02562 * 24 22 21 26 26 Si 1.86797 * 120.00000 * 179.97438 * 24 22 21 27 27 H 1.48505 * 109.46946 * 60.00622 * 26 24 22 28 28 H 1.48505 * 109.46943 * 180.02562 * 26 24 22 29 29 H 1.48497 * 109.47438 * 300.00289 * 26 24 22 30 30 H 1.08990 * 109.47291 * 270.13725 * 1 2 3 31 31 H 1.09003 * 109.46983 * 30.13860 * 1 2 3 32 32 H 1.09002 * 109.46845 * 150.13334 * 1 2 3 33 33 H 1.08011 * 126.06027 * 0.02562 * 3 2 1 34 34 H 1.08002 * 125.57053 * 179.70933 * 4 3 2 35 35 H 0.96996 * 120.00668 * 0.02562 * 10 8 7 36 36 H 1.09001 * 109.47333 * 59.99970 * 13 11 10 37 37 H 1.09002 * 109.47330 * 179.97438 * 13 11 10 38 38 H 1.09000 * 109.47130 * 299.99879 * 13 11 10 39 39 H 1.09000 * 109.47050 * 299.99699 * 16 14 11 40 40 H 1.09001 * 109.46801 * 59.99811 * 16 14 11 41 41 H 1.09001 * 109.46998 * 179.97438 * 16 14 11 42 42 H 0.97003 * 120.00173 * 335.01157 * 17 14 11 43 43 H 1.08997 * 109.47117 * 299.99744 * 20 18 17 44 44 H 1.08999 * 109.47222 * 60.00471 * 20 18 17 45 45 H 0.96995 * 119.99754 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3380 1.1246 0.0000 4 6 3.6217 0.6928 -0.0068 5 7 3.6283 -0.6625 -0.0054 6 1 4.4190 -1.2245 -0.0089 7 6 2.3263 -1.1089 0.0031 8 6 1.8898 -2.5093 0.0068 9 8 0.7027 -2.7766 0.0140 10 7 2.8036 -3.4999 0.0024 11 6 2.3677 -4.8986 0.0067 12 1 1.4524 -4.9957 -0.5772 13 6 2.1047 -5.3464 1.4457 14 6 3.4604 -5.7752 -0.6087 15 1 3.5858 -5.5154 -1.6597 16 6 4.7779 -5.5445 0.1343 17 7 3.0767 -7.1846 -0.4963 18 6 3.5741 -8.0895 -1.3626 19 8 4.3396 -7.7370 -2.2348 20 6 3.1789 -9.5392 -1.2473 21 16 4.0068 -10.4949 -2.5425 22 6 3.3842 -12.1031 -2.1813 23 1 2.7004 -12.2450 -1.3575 24 6 3.7718 -13.1875 -2.9563 25 7 4.6048 -13.0144 -3.9607 26 14 3.1123 -14.8926 -2.5728 27 1 1.6311 -14.8861 -2.6801 28 1 3.6747 -15.8698 -3.5394 29 1 3.5071 -15.2776 -1.1941 30 1 -0.3633 0.0025 1.0276 31 1 -0.3633 0.8888 -0.5160 32 1 -0.3633 -0.8912 -0.5118 33 1 2.0136 2.1549 0.0004 34 1 4.4973 1.3251 -0.0130 35 1 3.7499 -3.2869 -0.0029 36 1 1.3262 -4.7220 1.8841 37 1 1.7799 -6.3869 1.4489 38 1 3.0200 -5.2494 2.0296 39 1 5.0633 -4.4959 0.0508 40 1 4.6525 -5.8043 1.1855 41 1 5.5562 -6.1693 -0.3037 42 1 2.4646 -7.4665 0.2014 43 1 3.4751 -9.9199 -0.2699 44 1 2.0989 -9.6315 -1.3613 45 1 4.8759 -13.7723 -4.5020 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001718085454.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:46 Heat of formation + Delta-G solvation = -62.154269 kcal Electronic energy + Delta-G solvation = -26210.792462 eV Core-core repulsion = 22353.940336 eV Total energy + Delta-G solvation = -3856.852126 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.33120 -41.14121 -40.16033 -38.01818 -35.26237 -34.58400 -33.51180 -32.61208 -31.15535 -30.07210 -29.80792 -27.84364 -27.65896 -25.83573 -23.76030 -22.17695 -21.54782 -20.99808 -20.44433 -19.84193 -19.60159 -18.04423 -17.34037 -17.15461 -16.87917 -16.52431 -16.35381 -16.33682 -15.86973 -15.54457 -15.15029 -14.84272 -14.73059 -14.57994 -14.45505 -14.18423 -13.89141 -13.67711 -13.58980 -13.40869 -13.26432 -13.17840 -13.16203 -12.87118 -12.85521 -12.62052 -12.54843 -12.13122 -11.99732 -11.74491 -11.13096 -11.11339 -10.97459 -10.33813 -10.28441 -10.21489 -9.69672 -9.12334 -8.66618 -8.34873 -6.12675 0.44260 1.24577 1.43628 1.44685 1.54127 1.58214 1.83062 1.86121 2.22683 2.27155 2.31119 2.41898 2.99270 3.30938 3.41560 3.75691 3.87159 3.93542 4.05794 4.24518 4.27189 4.29155 4.32716 4.38426 4.41771 4.51067 4.63452 4.65261 4.87719 4.88082 4.89200 4.90151 5.00770 5.10851 5.17096 5.28174 5.36198 5.41603 5.42808 5.46352 5.76234 5.97364 6.19434 6.38380 6.44674 6.61085 7.06530 7.08704 7.20075 8.73978 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.030580 B = 0.001804 C = 0.001767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.423672 B =15513.318079 C =15842.898074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C -0.095 4.095 3 C -0.233 4.233 4 C 0.050 3.950 5 N -0.530 5.530 6 H 0.430 0.570 7 C -0.090 4.090 8 C 0.589 3.411 9 O -0.563 6.563 10 N -0.712 5.712 11 C 0.147 3.853 12 H 0.077 0.923 13 C -0.163 4.163 14 C 0.140 3.860 15 H 0.071 0.929 16 C -0.163 4.163 17 N -0.707 5.707 18 C 0.538 3.462 19 O -0.560 6.560 20 C -0.132 4.132 21 S -0.149 6.149 22 C -0.548 4.548 23 H 0.083 0.917 24 C 0.014 3.986 25 N -0.911 5.911 26 Si 0.997 3.003 27 H -0.263 1.263 28 H -0.279 1.279 29 H -0.261 1.261 30 H 0.066 0.934 31 H 0.076 0.924 32 H 0.056 0.944 33 H 0.158 0.842 34 H 0.213 0.787 35 H 0.407 0.593 36 H 0.055 0.945 37 H 0.079 0.921 38 H 0.080 0.920 39 H 0.087 0.913 40 H 0.082 0.918 41 H 0.045 0.955 42 H 0.415 0.585 43 H 0.112 0.888 44 H 0.108 0.892 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.182 28.268 15.013 32.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.104 4.104 3 C -0.256 4.256 4 C -0.087 4.087 5 N -0.127 5.127 6 H 0.270 0.730 7 C -0.202 4.202 8 C 0.378 3.622 9 O -0.442 6.442 10 N -0.365 5.365 11 C 0.042 3.958 12 H 0.095 0.905 13 C -0.221 4.221 14 C 0.035 3.965 15 H 0.089 0.911 16 C -0.221 4.221 17 N -0.363 5.363 18 C 0.324 3.676 19 O -0.438 6.438 20 C -0.283 4.283 21 S 0.079 5.921 22 C -0.696 4.696 23 H 0.101 0.899 24 C -0.191 4.191 25 N -0.547 5.547 26 Si 0.819 3.181 27 H -0.188 1.188 28 H -0.204 1.204 29 H -0.186 1.186 30 H 0.084 0.916 31 H 0.095 0.905 32 H 0.075 0.925 33 H 0.176 0.824 34 H 0.229 0.771 35 H 0.245 0.755 36 H 0.074 0.926 37 H 0.098 0.902 38 H 0.099 0.901 39 H 0.105 0.895 40 H 0.101 0.899 41 H 0.064 0.936 42 H 0.254 0.746 43 H 0.130 0.870 44 H 0.127 0.873 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -1.548 28.425 13.439 31.480 hybrid contribution -0.618 -1.805 0.959 2.135 sum -2.166 26.620 14.398 30.342 Atomic orbital electron populations 1.20300 0.89801 1.02467 1.02042 1.20287 0.96227 0.92038 1.01830 1.21114 0.92386 0.99096 1.13047 1.22690 1.00363 0.82744 1.02865 1.41947 1.06476 1.07893 1.56375 0.73012 1.20000 0.85352 0.92566 1.22311 1.17279 0.85502 0.83847 0.75547 1.90804 1.17602 1.83835 1.51969 1.45787 1.09907 1.05119 1.75736 1.20926 0.96715 0.79954 0.98213 0.90471 1.22227 1.03102 1.02149 0.94655 1.21024 0.94656 0.80261 1.00591 0.91060 1.22237 0.95612 1.02753 1.01525 1.45811 1.49705 1.06855 1.33970 1.20025 0.79692 0.87236 0.80626 1.90693 1.36278 1.80973 1.35829 1.23388 1.05415 0.94485 1.04998 1.85543 1.62450 1.03696 1.40453 1.23182 1.33276 0.93391 1.19702 0.89896 1.26119 0.94895 1.04039 0.94074 1.70174 1.32821 1.33221 1.18502 0.85018 0.78750 0.75807 0.78515 1.18772 1.20422 1.18604 0.91578 0.90526 0.92506 0.82449 0.77065 0.75478 0.92559 0.90206 0.90110 0.89486 0.89950 0.93598 0.74600 0.86958 0.87332 0.92005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.67 9.83 71.24 0.70 -0.97 16 2 C -0.09 -1.75 6.21 -19.56 -0.12 -1.87 16 3 C -0.23 -2.93 10.76 22.01 0.24 -2.69 16 4 C 0.05 0.38 11.89 83.48 0.99 1.37 16 5 N -0.53 -4.87 5.99 -183.63 -1.10 -5.97 16 6 H 0.43 1.19 8.19 -92.70 -0.76 0.43 16 7 C -0.09 -1.58 7.06 40.35 0.28 -1.30 16 8 C 0.59 12.36 7.75 86.45 0.67 13.03 16 9 O -0.56 -16.03 14.47 -4.31 -0.06 -16.09 16 10 N -0.71 -10.79 4.98 -446.51 -2.23 -13.01 16 11 C 0.15 2.56 2.62 44.99 0.12 2.68 16 12 H 0.08 1.73 7.58 -2.39 -0.02 1.71 16 13 C -0.16 -2.29 9.00 71.98 0.65 -1.64 16 14 C 0.14 2.82 2.62 44.99 0.12 2.94 16 15 H 0.07 1.83 7.58 -2.39 -0.02 1.81 16 16 C -0.16 -2.59 9.00 71.98 0.65 -1.94 16 17 N -0.71 -16.61 4.99 -442.52 -2.21 -18.82 16 18 C 0.54 18.96 7.81 87.66 0.68 19.64 16 19 O -0.56 -24.81 15.53 -3.04 -0.05 -24.86 16 20 C -0.13 -5.07 6.16 71.24 0.44 -4.63 16 21 S -0.15 -8.14 20.57 -56.49 -1.16 -9.31 16 22 C -0.55 -31.04 9.50 67.96 0.65 -30.40 16 23 H 0.08 4.35 7.80 -2.91 -0.02 4.32 16 24 C 0.01 0.77 5.49 84.86 0.47 1.23 16 25 N -0.91 -55.73 13.22 21.65 0.29 -55.45 16 26 Si 1.00 43.39 29.55 68.60 2.03 45.42 16 27 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 28 H -0.28 -11.85 7.11 99.48 0.71 -11.15 16 29 H -0.26 -10.76 7.11 99.48 0.71 -10.05 16 30 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.06 1.33 6.49 -2.39 -0.02 1.32 16 33 H 0.16 1.39 8.06 -2.90 -0.02 1.37 16 34 H 0.21 -0.20 8.06 -2.91 -0.02 -0.22 16 35 H 0.41 3.73 5.70 -92.71 -0.53 3.20 16 36 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.08 0.94 6.29 -2.39 -0.02 0.92 16 38 H 0.08 0.88 6.56 -2.39 -0.02 0.87 16 39 H 0.09 0.81 6.29 -2.39 -0.02 0.80 16 40 H 0.08 1.04 6.56 -2.39 -0.02 1.02 16 41 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 42 H 0.41 7.19 6.58 -92.71 -0.61 6.58 16 43 H 0.11 3.83 8.14 -2.40 -0.02 3.82 16 44 H 0.11 3.80 8.14 -2.40 -0.02 3.78 16 45 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 Total: -1.00 -84.56 385.23 1.19 -83.37 By element: Atomic # 1 Polarization: 20.08 SS G_CDS: -0.85 Total: 19.23 kcal Atomic # 6 Polarization: -11.06 SS G_CDS: 6.53 Total: -4.53 kcal Atomic # 7 Polarization: -87.99 SS G_CDS: -5.25 Total: -93.24 kcal Atomic # 8 Polarization: -40.84 SS G_CDS: -0.11 Total: -40.95 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.42 kcal Atomic # 16 Polarization: -8.14 SS G_CDS: -1.16 Total: -9.31 kcal Total: -84.56 1.19 -83.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001718085454.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.221 kcal (2) G-P(sol) polarization free energy of solvation -84.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds