Wall clock time and date at job start Sat Apr 11 2020 05:38:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86792 * 119.99892 * 2 1 4 4 H 1.48504 * 109.46925 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47158 * 299.99814 * 3 2 1 6 6 H 1.48500 * 109.47273 * 59.99755 * 3 2 1 7 7 C 1.38809 * 119.99767 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99707 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99932 * 0.02562 * 7 2 1 10 10 C 1.46504 * 119.99788 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.49972 * 60.06327 * 10 9 7 12 12 O 1.42905 * 109.46839 * 304.93362 * 11 10 9 13 13 C 1.53044 * 109.52605 * 180.14324 * 10 9 7 14 14 C 1.53044 * 109.53640 * 58.59746 * 13 10 9 15 15 C 1.52762 * 109.38111 * 61.24357 * 14 13 10 16 16 N 1.46932 * 109.00662 * 305.58544 * 15 14 13 17 17 C 1.34775 * 120.62920 * 233.58256 * 16 15 14 18 18 O 1.21283 * 119.99772 * 179.72518 * 17 16 15 19 19 C 1.50701 * 120.00035 * 359.72279 * 17 16 15 20 20 C 1.53006 * 109.46982 * 179.97438 * 19 17 16 21 21 C 1.50701 * 109.46982 * 179.97438 * 20 19 17 22 22 C 1.33641 * 126.03648 * 90.00142 * 21 20 19 23 23 N 1.31784 * 114.49781 * 180.26785 * 22 21 20 24 24 C 1.29027 * 117.12400 * 359.48088 * 23 22 21 25 25 S 1.70983 * 110.16706 * 0.49767 * 24 23 22 26 26 C 1.46927 * 118.73774 * 53.31084 * 16 15 14 27 27 H 0.96993 * 119.99687 * 0.02562 * 1 2 3 28 28 H 0.96999 * 120.00064 * 359.97438 * 9 7 2 29 29 H 1.08995 * 109.47514 * 64.93496 * 11 10 9 30 30 H 1.08998 * 109.47524 * 184.93936 * 11 10 9 31 31 H 0.96701 * 113.99583 * 179.97438 * 12 11 10 32 32 H 1.08992 * 109.45833 * 178.62108 * 13 10 9 33 33 H 1.09002 * 109.45674 * 298.59627 * 13 10 9 34 34 H 1.08991 * 109.49697 * 181.31371 * 14 13 10 35 35 H 1.08995 * 109.49740 * 301.42005 * 14 13 10 36 36 H 1.08995 * 109.51463 * 185.70648 * 15 14 13 37 37 H 1.09001 * 109.43506 * 65.42165 * 15 14 13 38 38 H 1.09004 * 109.47101 * 59.99933 * 19 17 16 39 39 H 1.09000 * 109.47045 * 299.99558 * 19 17 16 40 40 H 1.08999 * 109.46789 * 60.00202 * 20 19 17 41 41 H 1.09000 * 109.46723 * 300.00207 * 20 19 17 42 42 H 1.08002 * 122.74791 * 359.97438 * 22 21 20 43 43 H 1.07994 * 124.91489 * 180.22581 * 24 23 22 44 44 H 1.09001 * 109.58509 * 66.43016 * 26 16 15 45 45 H 1.08996 * 109.58577 * 186.70887 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7103 1.3463 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6568 0.0017 11 6 2.9358 -3.7387 1.2522 12 8 3.7859 -2.5916 1.3133 13 6 1.0646 -4.8210 -0.0022 14 6 0.1644 -4.7215 -1.2358 15 6 1.0211 -4.8124 -2.4973 16 7 2.0749 -3.7903 -2.4348 17 6 2.2411 -2.9128 -3.4441 18 8 3.1114 -2.0706 -3.3783 19 6 1.3457 -2.9782 -4.6545 20 6 1.7427 -1.8793 -5.6425 21 6 0.8477 -1.9450 -6.8531 22 6 -0.3129 -1.3009 -7.0089 23 7 -0.9132 -1.5271 -8.1600 24 6 -0.3186 -2.3180 -8.9881 25 16 1.1467 -2.8847 -8.3133 26 6 2.9399 -3.7391 -1.2482 27 1 -0.4849 0.8400 -0.0004 28 1 0.3556 -2.3880 0.0005 29 1 2.3028 -3.7695 2.1390 30 1 3.5457 -4.6410 1.2096 31 1 4.3713 -2.5766 2.0829 32 1 1.6105 -5.7640 -0.0261 33 1 0.4521 -4.7786 0.8985 34 1 -0.5580 -5.5376 -1.2258 35 1 -0.3631 -3.7677 -1.2253 36 1 0.3972 -4.6406 -3.3743 37 1 1.4748 -5.8017 -2.5571 38 1 0.3096 -2.8340 -4.3483 39 1 1.4513 -3.9522 -5.1323 40 1 2.7788 -2.0231 -5.9488 41 1 1.6369 -0.9054 -5.1643 42 1 -0.7272 -0.6521 -6.2513 43 1 -0.6944 -2.5869 -9.9642 44 1 3.5532 -4.6392 -1.2041 45 1 3.5832 -2.8610 -1.3026 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724908891.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:15 Heat of formation + Delta-G solvation = -19.274164 kcal Electronic energy + Delta-G solvation = -28469.557464 eV Core-core repulsion = 24614.564759 eV Total energy + Delta-G solvation = -3854.992705 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -39.97796 -39.60040 -37.84394 -35.74582 -34.10256 -33.73863 -32.22606 -31.08050 -29.52207 -28.52464 -26.39617 -25.31371 -24.84327 -23.47153 -22.91585 -21.67742 -20.10702 -19.18364 -18.21973 -18.13173 -17.30892 -16.68786 -16.18106 -15.63832 -15.61944 -15.22649 -14.69082 -14.39315 -14.17786 -14.07039 -13.87634 -13.76413 -13.37155 -13.24825 -13.08251 -12.65018 -12.47556 -12.20871 -12.11398 -11.91415 -11.75572 -11.50098 -11.15875 -10.84356 -10.78339 -10.71455 -10.60565 -10.44573 -10.13156 -9.75637 -9.68446 -9.48899 -9.42305 -9.20656 -8.97411 -8.95441 -8.77598 -8.02302 -6.78826 -5.54852 -2.80147 0.60872 1.24824 1.64148 2.76296 3.19390 3.54242 3.59151 3.65810 3.70517 4.25050 4.67317 4.76418 4.82693 4.98332 5.08157 5.14927 5.16916 5.22091 5.24274 5.42804 5.44414 5.48927 5.60708 5.64606 5.77927 5.78804 5.87642 5.90960 6.02227 6.04721 6.08447 6.10971 6.19028 6.19636 6.26777 6.37720 6.62228 6.78656 6.89931 7.12810 7.60237 7.97842 8.19726 8.39068 8.63317 8.78774 9.76904 10.24022 10.59848 11.68920 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011859 B = 0.003770 C = 0.003228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2360.455482 B = 7424.977833 C = 8672.397277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C -0.024 4.024 3 Si 0.901 3.099 4 H -0.281 1.281 5 H -0.297 1.297 6 H -0.299 1.299 7 C -0.192 4.192 8 H 0.092 0.908 9 N -0.702 5.702 10 C 0.188 3.812 11 C 0.074 3.926 12 O -0.535 6.535 13 C -0.115 4.115 14 C -0.133 4.133 15 C 0.111 3.889 16 N -0.594 5.594 17 C 0.520 3.480 18 O -0.531 6.531 19 C -0.131 4.131 20 C -0.029 4.029 21 C -0.199 4.199 22 C 0.028 3.972 23 N -0.468 5.468 24 C 0.008 3.992 25 S 0.108 5.892 26 C 0.111 3.889 27 H 0.248 0.752 28 H 0.381 0.619 29 H 0.038 0.962 30 H 0.023 0.977 31 H 0.351 0.649 32 H 0.061 0.939 33 H 0.066 0.934 34 H 0.067 0.933 35 H 0.081 0.919 36 H 0.077 0.923 37 H 0.060 0.940 38 H 0.096 0.904 39 H 0.086 0.914 40 H 0.084 0.916 41 H 0.099 0.901 42 H 0.179 0.821 43 H 0.196 0.804 44 H 0.043 0.957 45 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.412 -14.561 -11.148 18.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.218 4.218 3 Si 0.734 3.266 4 H -0.206 1.206 5 H -0.225 1.225 6 H -0.227 1.227 7 C -0.323 4.323 8 H 0.110 0.890 9 N -0.343 5.343 10 C 0.095 3.905 11 C -0.007 4.007 12 O -0.338 6.338 13 C -0.153 4.153 14 C -0.171 4.171 15 C -0.013 4.013 16 N -0.327 5.327 17 C 0.308 3.692 18 O -0.407 6.407 19 C -0.172 4.172 20 C -0.070 4.070 21 C -0.320 4.320 22 C -0.122 4.122 23 N -0.181 5.181 24 C -0.289 4.289 25 S 0.360 5.640 26 C -0.014 4.014 27 H 0.057 0.943 28 H 0.216 0.784 29 H 0.056 0.944 30 H 0.041 0.959 31 H 0.196 0.804 32 H 0.079 0.921 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.100 0.900 36 H 0.096 0.904 37 H 0.078 0.922 38 H 0.114 0.886 39 H 0.104 0.896 40 H 0.102 0.898 41 H 0.117 0.883 42 H 0.196 0.804 43 H 0.213 0.787 44 H 0.061 0.939 45 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 1.923 -14.241 -12.236 18.874 hybrid contribution -0.229 1.261 1.234 1.779 sum 1.694 -12.980 -11.002 17.099 Atomic orbital electron populations 1.69669 1.04971 1.24839 1.60418 1.24638 0.95330 0.97357 1.04439 0.86151 0.79185 0.84710 0.76525 1.20577 1.22519 1.22675 1.19563 0.91905 0.82969 1.37854 0.89028 1.42419 1.05173 0.99268 1.87404 1.19950 0.90942 0.88105 0.91549 1.22754 0.92091 0.86749 0.99091 1.86975 1.54752 1.43848 1.48212 1.21619 0.97774 0.97541 0.98379 1.21793 0.97858 1.03199 0.94284 1.21552 0.89671 0.91178 0.98854 1.47747 1.33851 1.32273 1.18819 1.20219 0.84637 0.80555 0.83812 1.90701 1.35001 1.35086 1.79940 1.21658 1.01125 0.99915 0.94501 1.19831 0.97083 1.00939 0.89106 1.26130 1.01526 1.03690 1.00654 1.21896 0.92667 1.02311 0.95297 1.66326 1.33459 1.15296 1.02984 1.28322 0.96297 1.00162 1.04165 1.84011 1.24082 1.45731 1.10167 1.22104 0.92844 1.01735 0.84699 0.94258 0.78419 0.94423 0.95906 0.80439 0.92051 0.91548 0.91465 0.90040 0.90449 0.92164 0.88612 0.89598 0.89766 0.88256 0.80415 0.78720 0.93892 0.87918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -29.02 13.06 55.49 0.72 -28.29 16 2 C -0.02 -0.72 5.50 -17.43 -0.10 -0.82 16 3 Si 0.90 24.20 29.55 -169.99 -5.02 19.18 16 4 H -0.28 -7.47 7.11 56.52 0.40 -7.06 16 5 H -0.30 -8.13 7.11 56.52 0.40 -7.72 16 6 H -0.30 -8.01 7.11 56.52 0.40 -7.61 16 7 C -0.19 -5.32 8.07 -15.06 -0.12 -5.44 16 8 H 0.09 2.64 5.27 -52.49 -0.28 2.36 16 9 N -0.70 -16.73 4.75 -47.12 -0.22 -16.95 16 10 C 0.19 3.47 0.68 -131.70 -0.09 3.38 16 11 C 0.07 1.28 6.09 37.16 0.23 1.50 16 12 O -0.54 -10.31 10.05 -35.23 -0.35 -10.66 16 13 C -0.12 -1.67 4.77 -26.69 -0.13 -1.79 16 14 C -0.13 -1.81 5.90 -26.83 -0.16 -1.97 16 15 C 0.11 1.42 6.31 -3.93 -0.02 1.39 16 16 N -0.59 -10.05 2.90 -173.03 -0.50 -10.55 16 17 C 0.52 9.53 7.70 -10.99 -0.08 9.44 16 18 O -0.53 -12.04 15.39 5.55 0.09 -11.95 16 19 C -0.13 -1.80 4.03 -27.88 -0.11 -1.91 16 20 C -0.03 -0.40 5.04 -27.88 -0.14 -0.54 16 21 C -0.20 -2.44 5.85 -35.92 -0.21 -2.65 16 22 C 0.03 0.37 11.25 -19.18 -0.22 0.15 16 23 N -0.47 -6.07 10.54 -15.75 -0.17 -6.24 16 24 C 0.01 0.08 12.23 51.58 0.63 0.71 16 25 S 0.11 1.05 23.22 -107.50 -2.50 -1.44 16 26 C 0.11 2.05 4.91 -3.71 -0.02 2.03 16 27 H 0.25 7.49 8.31 -40.82 -0.34 7.15 16 28 H 0.38 9.74 6.43 -40.82 -0.26 9.48 16 29 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.35 4.99 9.12 45.56 0.42 5.41 16 32 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 33 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.08 1.39 6.75 -51.93 -0.35 1.03 16 36 H 0.08 0.86 5.93 -51.93 -0.31 0.55 16 37 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.10 1.31 7.68 -51.93 -0.40 0.91 16 39 H 0.09 0.95 7.95 -51.93 -0.41 0.54 16 40 H 0.08 1.15 8.10 -51.93 -0.42 0.73 16 41 H 0.10 1.57 8.10 -51.93 -0.42 1.14 16 42 H 0.18 2.25 8.06 -52.49 -0.42 1.82 16 43 H 0.20 1.24 8.06 -52.49 -0.42 0.82 16 44 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.10 2.36 5.82 -51.93 -0.30 2.06 16 LS Contribution 371.69 15.07 5.60 5.60 Total: -1.00 -35.86 371.69 -8.57 -44.44 By element: Atomic # 1 Polarization: 19.05 SS G_CDS: -5.68 Total: 13.37 kcal Atomic # 6 Polarization: 4.05 SS G_CDS: -0.54 Total: 3.51 kcal Atomic # 7 Polarization: -61.87 SS G_CDS: -0.17 Total: -62.04 kcal Atomic # 8 Polarization: -22.34 SS G_CDS: -0.27 Total: -22.61 kcal Atomic # 14 Polarization: 24.20 SS G_CDS: -5.02 Total: 19.18 kcal Atomic # 16 Polarization: 1.05 SS G_CDS: -2.50 Total: -1.44 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -35.86 -8.57 -44.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724908891.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.162 kcal (2) G-P(sol) polarization free energy of solvation -35.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds