Wall clock time and date at job start Sat Apr 11 2020 05:38:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86792 * 119.99892 * 2 1 4 4 H 1.48504 * 109.46925 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47158 * 299.99814 * 3 2 1 6 6 H 1.48500 * 109.47273 * 59.99755 * 3 2 1 7 7 C 1.38809 * 119.99767 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99707 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99932 * 0.02562 * 7 2 1 10 10 C 1.46504 * 119.99788 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.49972 * 60.06327 * 10 9 7 12 12 O 1.42905 * 109.46839 * 304.93362 * 11 10 9 13 13 C 1.53044 * 109.52605 * 180.14324 * 10 9 7 14 14 C 1.53044 * 109.53640 * 58.59746 * 13 10 9 15 15 C 1.52762 * 109.38111 * 61.24357 * 14 13 10 16 16 N 1.46932 * 109.00662 * 305.58544 * 15 14 13 17 17 C 1.34775 * 120.62920 * 233.58256 * 16 15 14 18 18 O 1.21283 * 119.99772 * 179.72518 * 17 16 15 19 19 C 1.50701 * 120.00035 * 359.72279 * 17 16 15 20 20 C 1.53006 * 109.46982 * 179.97438 * 19 17 16 21 21 C 1.50701 * 109.46982 * 179.97438 * 20 19 17 22 22 C 1.33641 * 126.03648 * 90.00142 * 21 20 19 23 23 N 1.31784 * 114.49781 * 180.26785 * 22 21 20 24 24 C 1.29027 * 117.12400 * 359.48088 * 23 22 21 25 25 S 1.70983 * 110.16706 * 0.49767 * 24 23 22 26 26 C 1.46927 * 118.73774 * 53.31084 * 16 15 14 27 27 H 0.96993 * 119.99687 * 0.02562 * 1 2 3 28 28 H 0.96999 * 120.00064 * 359.97438 * 9 7 2 29 29 H 1.08995 * 109.47514 * 64.93496 * 11 10 9 30 30 H 1.08998 * 109.47524 * 184.93936 * 11 10 9 31 31 H 0.96701 * 113.99583 * 179.97438 * 12 11 10 32 32 H 1.08992 * 109.45833 * 178.62108 * 13 10 9 33 33 H 1.09002 * 109.45674 * 298.59627 * 13 10 9 34 34 H 1.08991 * 109.49697 * 181.31371 * 14 13 10 35 35 H 1.08995 * 109.49740 * 301.42005 * 14 13 10 36 36 H 1.08995 * 109.51463 * 185.70648 * 15 14 13 37 37 H 1.09001 * 109.43506 * 65.42165 * 15 14 13 38 38 H 1.09004 * 109.47101 * 59.99933 * 19 17 16 39 39 H 1.09000 * 109.47045 * 299.99558 * 19 17 16 40 40 H 1.08999 * 109.46789 * 60.00202 * 20 19 17 41 41 H 1.09000 * 109.46723 * 300.00207 * 20 19 17 42 42 H 1.08002 * 122.74791 * 359.97438 * 22 21 20 43 43 H 1.07994 * 124.91489 * 180.22581 * 24 23 22 44 44 H 1.09001 * 109.58509 * 66.43016 * 26 16 15 45 45 H 1.08996 * 109.58577 * 186.70887 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7103 1.3463 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6568 0.0017 11 6 2.9358 -3.7387 1.2522 12 8 3.7859 -2.5916 1.3133 13 6 1.0646 -4.8210 -0.0022 14 6 0.1644 -4.7215 -1.2358 15 6 1.0211 -4.8124 -2.4973 16 7 2.0749 -3.7903 -2.4348 17 6 2.2411 -2.9128 -3.4441 18 8 3.1114 -2.0706 -3.3783 19 6 1.3457 -2.9782 -4.6545 20 6 1.7427 -1.8793 -5.6425 21 6 0.8477 -1.9450 -6.8531 22 6 -0.3129 -1.3009 -7.0089 23 7 -0.9132 -1.5271 -8.1600 24 6 -0.3186 -2.3180 -8.9881 25 16 1.1467 -2.8847 -8.3133 26 6 2.9399 -3.7391 -1.2482 27 1 -0.4849 0.8400 -0.0004 28 1 0.3556 -2.3880 0.0005 29 1 2.3028 -3.7695 2.1390 30 1 3.5457 -4.6410 1.2096 31 1 4.3713 -2.5766 2.0829 32 1 1.6105 -5.7640 -0.0261 33 1 0.4521 -4.7786 0.8985 34 1 -0.5580 -5.5376 -1.2258 35 1 -0.3631 -3.7677 -1.2253 36 1 0.3972 -4.6406 -3.3743 37 1 1.4748 -5.8017 -2.5571 38 1 0.3096 -2.8340 -4.3483 39 1 1.4513 -3.9522 -5.1323 40 1 2.7788 -2.0231 -5.9488 41 1 1.6369 -0.9054 -5.1643 42 1 -0.7272 -0.6521 -6.2513 43 1 -0.6944 -2.5869 -9.9642 44 1 3.5532 -4.6392 -1.2041 45 1 3.5832 -2.8610 -1.3026 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724908891.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:14 Heat of formation + Delta-G solvation = -47.142519 kcal Electronic energy + Delta-G solvation = -28470.765926 eV Core-core repulsion = 24614.564759 eV Total energy + Delta-G solvation = -3856.201168 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.28903 -40.57240 -39.29359 -37.13821 -35.54554 -35.17132 -33.88903 -32.52515 -30.79112 -30.13826 -27.54225 -26.53035 -26.00283 -25.50911 -24.01483 -22.90425 -21.03560 -20.58725 -19.62982 -19.19045 -19.00077 -17.95396 -17.77776 -17.07501 -16.72126 -16.52583 -16.14828 -15.75593 -15.63123 -15.34272 -15.19167 -14.89532 -14.68727 -14.62646 -14.46953 -14.01410 -13.64574 -13.55968 -13.40541 -13.27300 -13.06481 -12.92942 -12.70620 -12.63182 -12.53860 -12.03097 -11.91571 -11.86152 -11.74091 -11.33802 -11.28073 -10.90937 -10.66759 -10.58031 -10.55570 -10.18466 -9.87900 -9.45262 -8.77718 -7.79932 -5.00043 -0.25136 0.41033 0.79235 1.39275 1.43021 1.51624 1.79995 1.84239 2.28267 2.64726 3.39080 3.43114 3.61217 3.69935 3.88412 3.92252 3.99026 4.03708 4.08218 4.20516 4.28269 4.36410 4.39355 4.46000 4.53582 4.59757 4.63693 4.72787 4.80947 4.84176 4.95931 4.97709 5.02460 5.06010 5.07506 5.17800 5.22616 5.47562 5.54955 5.78989 5.94824 6.45703 6.65203 6.74163 7.17179 7.41212 7.54441 8.23568 8.46074 9.44737 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011859 B = 0.003770 C = 0.003228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2360.455482 B = 7424.977833 C = 8672.397277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.978 5.978 2 C -0.090 4.090 3 Si 0.942 3.058 4 H -0.280 1.280 5 H -0.309 1.309 6 H -0.297 1.297 7 C -0.157 4.157 8 H 0.080 0.920 9 N -0.709 5.709 10 C 0.174 3.826 11 C 0.073 3.927 12 O -0.571 6.571 13 C -0.109 4.109 14 C -0.130 4.130 15 C 0.105 3.895 16 N -0.596 5.596 17 C 0.505 3.495 18 O -0.589 6.589 19 C -0.118 4.118 20 C -0.021 4.021 21 C -0.219 4.219 22 C 0.017 3.983 23 N -0.503 5.503 24 C 0.017 3.983 25 S 0.168 5.832 26 C 0.115 3.885 27 H 0.239 0.761 28 H 0.371 0.629 29 H 0.036 0.964 30 H 0.065 0.935 31 H 0.373 0.627 32 H 0.102 0.898 33 H 0.064 0.936 34 H 0.106 0.894 35 H 0.038 0.962 36 H 0.096 0.904 37 H 0.100 0.900 38 H 0.096 0.904 39 H 0.124 0.876 40 H 0.082 0.918 41 H 0.064 0.936 42 H 0.167 0.833 43 H 0.233 0.767 44 H 0.077 0.923 45 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.567 -18.683 -12.517 22.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.634 5.634 2 C -0.279 4.279 3 Si 0.777 3.223 4 H -0.205 1.205 5 H -0.238 1.238 6 H -0.225 1.225 7 C -0.290 4.290 8 H 0.098 0.902 9 N -0.348 5.348 10 C 0.083 3.917 11 C -0.007 4.007 12 O -0.377 6.377 13 C -0.147 4.147 14 C -0.168 4.168 15 C -0.017 4.017 16 N -0.327 5.327 17 C 0.294 3.706 18 O -0.470 6.470 19 C -0.158 4.158 20 C -0.062 4.062 21 C -0.340 4.340 22 C -0.133 4.133 23 N -0.216 5.216 24 C -0.280 4.280 25 S 0.420 5.580 26 C -0.009 4.009 27 H 0.048 0.952 28 H 0.204 0.796 29 H 0.054 0.946 30 H 0.083 0.917 31 H 0.220 0.780 32 H 0.120 0.880 33 H 0.083 0.917 34 H 0.125 0.875 35 H 0.057 0.943 36 H 0.114 0.886 37 H 0.118 0.882 38 H 0.115 0.885 39 H 0.142 0.858 40 H 0.100 0.900 41 H 0.082 0.918 42 H 0.184 0.816 43 H 0.249 0.751 44 H 0.095 0.905 45 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 2.111 -18.448 -13.580 23.004 hybrid contribution -0.167 2.364 1.620 2.871 sum 1.944 -16.083 -11.960 20.137 Atomic orbital electron populations 1.69768 1.05677 1.24349 1.63576 1.25127 0.96007 0.99557 1.07229 0.85451 0.78286 0.82694 0.75898 1.20520 1.23791 1.22547 1.19639 0.91444 0.84411 1.33509 0.90192 1.42540 1.04812 1.00350 1.87131 1.20439 0.91957 0.87238 0.92065 1.22751 0.92347 0.87678 0.97956 1.86872 1.55644 1.45368 1.49803 1.21634 0.97151 0.97121 0.98807 1.21781 0.98294 1.02453 0.94308 1.21927 0.88894 0.91555 0.99276 1.47953 1.34339 1.32721 1.17732 1.21071 0.84450 0.79844 0.85221 1.90670 1.37590 1.37422 1.81301 1.21613 0.99712 1.01757 0.92710 1.19600 0.97419 0.99336 0.89807 1.25932 1.01197 1.05282 1.01634 1.21855 0.93211 1.02592 0.95670 1.66359 1.34652 1.17208 1.03423 1.29004 0.96012 0.98252 1.04773 1.83776 1.22939 1.43819 1.07440 1.21896 0.92829 1.00891 0.85331 0.95236 0.79644 0.94577 0.91675 0.77990 0.88009 0.91732 0.87525 0.94306 0.88613 0.88187 0.88524 0.85816 0.89950 0.91762 0.81635 0.75102 0.90495 0.93152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -62.43 13.06 21.65 0.28 -62.15 16 2 C -0.09 -5.50 5.50 84.86 0.47 -5.03 16 3 Si 0.94 51.94 29.55 68.60 2.03 53.97 16 4 H -0.28 -15.14 7.11 99.48 0.71 -14.43 16 5 H -0.31 -17.42 7.11 99.48 0.71 -16.71 16 6 H -0.30 -16.10 7.11 99.48 0.71 -15.40 16 7 C -0.16 -8.99 8.07 84.03 0.68 -8.31 16 8 H 0.08 4.78 5.27 -2.91 -0.02 4.76 16 9 N -0.71 -34.30 4.75 -302.99 -1.44 -35.74 16 10 C 0.17 6.17 0.68 3.68 0.00 6.17 16 11 C 0.07 2.35 6.09 71.98 0.44 2.78 16 12 O -0.57 -21.73 10.05 -148.98 -1.50 -23.23 16 13 C -0.11 -2.78 4.77 30.62 0.15 -2.63 16 14 C -0.13 -3.12 5.90 30.53 0.18 -2.94 16 15 C 0.11 2.28 6.31 86.22 0.54 2.83 16 16 N -0.60 -19.32 2.90 -819.73 -2.37 -21.69 16 17 C 0.50 18.65 7.70 87.66 0.67 19.33 16 18 O -0.59 -28.08 15.39 -3.04 -0.05 -28.13 16 19 C -0.12 -3.15 4.03 29.85 0.12 -3.03 16 20 C -0.02 -0.60 5.04 29.85 0.15 -0.45 16 21 C -0.22 -5.27 5.85 24.64 0.14 -5.13 16 22 C 0.02 0.45 11.25 83.66 0.94 1.39 16 23 N -0.50 -12.55 10.54 -203.74 -2.15 -14.70 16 24 C 0.02 0.28 12.23 130.65 1.60 1.88 16 25 S 0.17 2.80 23.22 -56.49 -1.31 1.49 16 26 C 0.12 4.14 4.91 86.36 0.42 4.56 16 27 H 0.24 15.11 8.31 -92.71 -0.77 14.34 16 28 H 0.37 19.42 6.43 -92.71 -0.60 18.83 16 29 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 31 H 0.37 10.29 9.12 -74.06 -0.68 9.62 16 32 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 33 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 34 H 0.11 1.77 8.14 -2.39 -0.02 1.75 16 35 H 0.04 1.28 6.75 -2.39 -0.02 1.27 16 36 H 0.10 1.75 5.93 -2.39 -0.01 1.74 16 37 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 38 H 0.10 2.60 7.68 -2.39 -0.02 2.58 16 39 H 0.12 2.35 7.95 -2.39 -0.02 2.33 16 40 H 0.08 2.30 8.10 -2.39 -0.02 2.28 16 41 H 0.06 2.23 8.10 -2.39 -0.02 2.21 16 42 H 0.17 4.55 8.06 -2.91 -0.02 4.53 16 43 H 0.23 2.02 8.06 -2.91 -0.02 1.99 16 44 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 45 H 0.05 2.37 5.82 -2.39 -0.01 2.35 16 Total: -1.00 -84.64 371.69 -0.24 -84.88 By element: Atomic # 1 Polarization: 34.12 SS G_CDS: -0.24 Total: 33.88 kcal Atomic # 6 Polarization: 4.91 SS G_CDS: 6.51 Total: 11.42 kcal Atomic # 7 Polarization: -128.60 SS G_CDS: -5.68 Total: -134.28 kcal Atomic # 8 Polarization: -49.81 SS G_CDS: -1.54 Total: -51.36 kcal Atomic # 14 Polarization: 51.94 SS G_CDS: 2.03 Total: 53.97 kcal Atomic # 16 Polarization: 2.80 SS G_CDS: -1.31 Total: 1.49 kcal Total: -84.64 -0.24 -84.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724908891.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.738 kcal (2) G-P(sol) polarization free energy of solvation -84.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds