Wall clock time and date at job start Sat Apr 11 2020 05:38:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86795 * 120.00152 * 2 1 4 4 H 1.48494 * 109.47071 * 180.27747 * 3 2 1 5 5 H 1.48506 * 109.47211 * 300.27889 * 3 2 1 6 6 H 1.48493 * 109.47327 * 60.27756 * 3 2 1 7 7 C 1.38815 * 119.99673 * 180.28090 * 2 1 3 8 8 H 1.07999 * 119.99858 * 179.72450 * 7 2 1 9 9 N 1.36938 * 119.99817 * 359.71804 * 7 2 1 10 10 C 1.46506 * 119.99589 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.49978 * 299.93716 * 10 9 7 12 12 O 1.42900 * 109.46718 * 59.99870 * 11 10 9 13 13 C 1.53043 * 109.49580 * 179.83731 * 10 9 7 14 14 C 1.53036 * 109.54027 * 301.41786 * 13 10 9 15 15 C 1.53187 * 109.31230 * 298.63421 * 14 13 10 16 16 N 1.46922 * 108.77857 * 54.63534 * 15 14 13 17 17 C 1.34775 * 120.63610 * 126.41416 * 16 15 14 18 18 O 1.21280 * 120.00482 * 179.97438 * 17 16 15 19 19 C 1.50706 * 119.99528 * 359.97438 * 17 16 15 20 20 C 1.52998 * 109.47038 * 179.97438 * 19 17 16 21 21 C 1.50701 * 109.47345 * 180.02562 * 20 19 17 22 22 C 1.33632 * 122.74962 * 124.73491 * 21 20 19 23 23 S 1.76200 * 107.92719 * 179.97438 * 22 21 20 24 24 C 1.70977 * 90.27955 * 0.27336 * 23 22 21 25 25 N 1.29029 * 110.16653 * 359.84240 * 24 23 22 26 26 C 1.46931 * 118.73833 * 306.39404 * 16 15 14 27 27 H 0.97000 * 120.00043 * 359.72461 * 1 2 3 28 28 H 0.96999 * 120.00331 * 0.02562 * 9 7 2 29 29 H 1.09001 * 109.46778 * 180.02562 * 11 10 9 30 30 H 1.09001 * 109.46916 * 300.00381 * 11 10 9 31 31 H 0.96704 * 113.99357 * 180.02562 * 12 11 10 32 32 H 1.09005 * 109.45284 * 61.43647 * 13 10 9 33 33 H 1.08998 * 109.45954 * 181.39024 * 13 10 9 34 34 H 1.09002 * 109.49735 * 178.67894 * 14 13 10 35 35 H 1.09003 * 109.52693 * 58.59749 * 14 13 10 36 36 H 1.09002 * 109.58915 * 294.84962 * 15 14 13 37 37 H 1.09002 * 109.58989 * 174.42575 * 15 14 13 38 38 H 1.08993 * 109.47509 * 300.00479 * 19 17 16 39 39 H 1.08998 * 109.46966 * 60.00776 * 19 17 16 40 40 H 1.09000 * 109.47627 * 300.00921 * 20 19 17 41 41 H 1.09002 * 109.46786 * 60.00164 * 20 19 17 42 42 H 1.08004 * 126.03763 * 0.03974 * 22 21 20 43 43 H 1.07999 * 124.91822 * 179.84339 * 24 23 22 44 44 H 1.08998 * 109.58577 * 293.82227 * 26 16 15 45 45 H 1.09002 * 109.58928 * 173.39363 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7101 1.3463 -0.0068 5 1 1.8864 2.3994 -1.2091 6 1 1.8966 2.3934 1.2158 7 6 2.0102 -1.2022 -0.0059 8 1 3.0902 -1.2022 -0.0104 9 7 1.3254 -2.3881 -0.0059 10 6 2.0579 -3.6568 -0.0115 11 6 2.9318 -3.7365 -1.2649 12 8 3.8606 -2.6505 -1.2677 13 6 1.0639 -4.8205 -0.0062 14 6 0.1677 -4.7224 1.2304 15 6 1.0319 -4.8190 2.4915 16 7 2.0823 -3.7939 2.4247 17 6 2.2528 -2.9185 3.4352 18 8 3.1237 -2.0771 3.3683 19 6 1.3611 -2.9851 4.6483 20 6 1.7631 -1.8894 5.6376 21 6 0.8719 -1.9564 6.8509 22 6 1.3498 -2.0739 8.0933 23 16 -0.0207 -2.1146 9.2000 24 6 -1.1004 -1.9776 7.8813 25 7 -0.4428 -1.9102 6.7732 26 6 2.9436 -3.7414 1.2355 27 1 -0.4850 0.8400 0.0040 28 1 0.3555 -2.3880 -0.0021 29 1 3.4762 -4.6808 -1.2688 30 1 2.3010 -3.6774 -2.1519 31 1 4.4481 -2.6376 -2.0357 32 1 0.4488 -4.7766 -0.9050 33 1 1.6094 -5.7639 0.0146 34 1 -0.5553 -5.5381 1.2214 35 1 -0.3599 -3.7686 1.2232 36 1 1.4888 -5.8071 2.5466 37 1 0.4127 -4.6509 3.3727 38 1 0.3242 -2.8392 4.3456 39 1 1.4670 -3.9601 5.1239 40 1 2.8000 -2.0357 5.9402 41 1 1.6576 -0.9142 5.1622 42 1 2.3921 -2.1324 8.3703 43 1 -2.1769 -1.9513 7.9639 44 1 3.5563 -4.6416 1.1881 45 1 3.5858 -2.8622 1.2879 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724910617.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:27 Heat of formation + Delta-G solvation = -18.023444 kcal Electronic energy + Delta-G solvation = -28522.314608 eV Core-core repulsion = 24667.376139 eV Total energy + Delta-G solvation = -3854.938470 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.11420 -39.59532 -37.71494 -35.68484 -33.77151 -33.27757 -32.15236 -30.99357 -29.88570 -28.50326 -26.24491 -25.25744 -24.93494 -23.43783 -23.28506 -21.61343 -19.63948 -19.12909 -18.15066 -17.95586 -17.23457 -16.57584 -16.15744 -15.84120 -15.58927 -15.06977 -14.87490 -14.33236 -14.10417 -13.92666 -13.69362 -13.40959 -13.32987 -13.16435 -13.15192 -12.76300 -12.51145 -12.12682 -12.01130 -11.73668 -11.58319 -11.41539 -11.09549 -10.83523 -10.71782 -10.67288 -10.55405 -10.37683 -10.07561 -9.72373 -9.64089 -9.58427 -9.49639 -9.14733 -8.93132 -8.86396 -8.72462 -7.93922 -6.74034 -5.50578 -2.75992 0.61862 1.28240 1.60528 2.73143 3.30585 3.61991 3.65417 3.69034 3.73632 4.14950 4.80127 4.83642 4.87702 5.05210 5.14809 5.16560 5.23070 5.28674 5.35655 5.49883 5.53395 5.55983 5.67901 5.71102 5.84188 5.87499 5.92464 5.94765 6.01583 6.08191 6.14464 6.24198 6.25035 6.32848 6.36358 6.44668 6.69104 6.85088 6.97988 7.21741 7.66159 8.07545 8.22785 8.41552 8.67383 8.89307 9.81131 10.28946 10.64546 11.73207 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011942 B = 0.003633 C = 0.003148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2344.071606 B = 7706.249252 C = 8891.018085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C -0.023 4.023 3 Si 0.901 3.099 4 H -0.280 1.280 5 H -0.299 1.299 6 H -0.297 1.297 7 C -0.196 4.196 8 H 0.092 0.908 9 N -0.703 5.703 10 C 0.188 3.812 11 C 0.076 3.924 12 O -0.539 6.539 13 C -0.115 4.115 14 C -0.132 4.132 15 C 0.111 3.889 16 N -0.595 5.595 17 C 0.520 3.480 18 O -0.534 6.534 19 C -0.127 4.127 20 C -0.030 4.030 21 C 0.076 3.924 22 C -0.255 4.255 23 S 0.095 5.905 24 C 0.026 3.974 25 N -0.460 5.460 26 C 0.112 3.888 27 H 0.248 0.752 28 H 0.381 0.619 29 H 0.023 0.977 30 H 0.039 0.961 31 H 0.353 0.647 32 H 0.065 0.935 33 H 0.060 0.940 34 H 0.066 0.934 35 H 0.081 0.919 36 H 0.059 0.941 37 H 0.078 0.922 38 H 0.100 0.900 39 H 0.082 0.918 40 H 0.085 0.915 41 H 0.094 0.906 42 H 0.177 0.823 43 H 0.199 0.801 44 H 0.042 0.958 45 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.033 -13.662 13.178 18.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.217 4.217 3 Si 0.734 3.266 4 H -0.206 1.206 5 H -0.227 1.227 6 H -0.225 1.225 7 C -0.327 4.327 8 H 0.109 0.891 9 N -0.343 5.343 10 C 0.095 3.905 11 C -0.006 4.006 12 O -0.342 6.342 13 C -0.153 4.153 14 C -0.171 4.171 15 C -0.012 4.012 16 N -0.328 5.328 17 C 0.308 3.692 18 O -0.410 6.410 19 C -0.168 4.168 20 C -0.071 4.071 21 C -0.055 4.055 22 C -0.394 4.394 23 S 0.347 5.653 24 C -0.272 4.272 25 N -0.173 5.173 26 C -0.013 4.013 27 H 0.057 0.943 28 H 0.216 0.784 29 H 0.041 0.959 30 H 0.057 0.943 31 H 0.198 0.802 32 H 0.084 0.916 33 H 0.079 0.921 34 H 0.084 0.916 35 H 0.100 0.900 36 H 0.077 0.923 37 H 0.096 0.904 38 H 0.119 0.881 39 H 0.100 0.900 40 H 0.104 0.896 41 H 0.112 0.888 42 H 0.195 0.805 43 H 0.216 0.784 44 H 0.060 0.940 45 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -0.196 -12.946 14.306 19.295 hybrid contribution 0.624 0.813 -1.330 1.679 sum 0.428 -12.134 12.976 17.770 Atomic orbital electron populations 1.69666 1.04983 1.24832 1.60244 1.24642 0.95325 0.97366 1.04335 0.86152 0.79191 0.84752 0.76500 1.20554 1.22681 1.22511 1.19568 0.91956 0.83021 1.38156 0.89066 1.42427 1.05189 0.99279 1.87424 1.19952 0.90918 0.88067 0.91605 1.22762 0.91017 0.87462 0.99313 1.86892 1.50443 1.49651 1.47221 1.21613 0.97805 0.97507 0.98367 1.21862 0.97787 1.03169 0.94246 1.21630 0.89706 0.91020 0.98887 1.47749 1.34110 1.32286 1.18650 1.20312 0.84532 0.80431 0.83915 1.90684 1.35004 1.35163 1.80143 1.21526 1.01407 0.99624 0.94200 1.19969 0.96317 1.00875 0.89926 1.20503 0.89404 1.00320 0.95316 1.26864 1.03706 1.13664 0.95133 1.83950 0.98883 1.68123 1.14393 1.28460 1.04935 1.03799 0.90055 1.66152 1.07213 1.14822 1.29134 1.22072 0.92894 1.01690 0.84640 0.94258 0.78391 0.95914 0.94276 0.80230 0.91596 0.92096 0.91565 0.90003 0.92273 0.90364 0.88146 0.89999 0.89604 0.88801 0.80516 0.78444 0.93998 0.87860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -29.68 13.06 55.49 0.72 -28.96 16 2 C -0.02 -0.70 5.50 -17.43 -0.10 -0.80 16 3 Si 0.90 24.70 29.55 -169.99 -5.02 19.67 16 4 H -0.28 -7.59 7.11 56.52 0.40 -7.19 16 5 H -0.30 -8.13 7.11 56.52 0.40 -7.73 16 6 H -0.30 -8.32 7.11 56.52 0.40 -7.92 16 7 C -0.20 -5.57 8.21 -15.06 -0.12 -5.70 16 8 H 0.09 2.69 5.28 -52.49 -0.28 2.41 16 9 N -0.70 -17.27 4.75 -47.12 -0.22 -17.50 16 10 C 0.19 3.60 0.68 -131.69 -0.09 3.51 16 11 C 0.08 1.34 6.08 37.16 0.23 1.56 16 12 O -0.54 -10.53 10.10 -35.23 -0.36 -10.89 16 13 C -0.11 -1.74 4.76 -26.69 -0.13 -1.87 16 14 C -0.13 -1.91 5.91 -26.62 -0.16 -2.07 16 15 C 0.11 1.53 6.34 -3.72 -0.02 1.51 16 16 N -0.60 -10.68 2.89 -172.77 -0.50 -11.18 16 17 C 0.52 10.17 7.70 -10.98 -0.08 10.08 16 18 O -0.53 -12.65 15.40 5.56 0.09 -12.57 16 19 C -0.13 -1.96 3.95 -27.88 -0.11 -2.07 16 20 C -0.03 -0.46 5.00 -27.88 -0.14 -0.60 16 21 C 0.08 1.03 6.08 -84.23 -0.51 0.51 16 22 C -0.25 -2.77 11.07 29.12 0.32 -2.45 16 23 S 0.09 0.84 23.22 -107.50 -2.50 -1.66 16 24 C 0.03 0.27 12.23 51.59 0.63 0.90 16 25 N -0.46 -6.44 10.34 -11.90 -0.12 -6.57 16 26 C 0.11 2.16 4.85 -3.71 -0.02 2.14 16 27 H 0.25 7.66 8.31 -40.82 -0.34 7.32 16 28 H 0.38 10.05 6.43 -40.82 -0.26 9.78 16 29 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.35 5.09 9.12 45.56 0.42 5.50 16 32 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 33 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.08 1.47 6.75 -51.93 -0.35 1.12 16 36 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.08 0.97 5.93 -51.93 -0.31 0.66 16 38 H 0.10 1.64 7.63 -51.93 -0.40 1.25 16 39 H 0.08 1.03 7.94 -51.93 -0.41 0.62 16 40 H 0.09 1.20 7.98 -51.93 -0.41 0.79 16 41 H 0.09 1.70 8.10 -51.93 -0.42 1.28 16 42 H 0.18 1.53 8.06 -52.48 -0.42 1.11 16 43 H 0.20 1.40 8.06 -52.49 -0.42 0.97 16 44 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 45 H 0.10 2.47 5.70 -51.93 -0.30 2.17 16 LS Contribution 371.27 15.07 5.59 5.59 Total: -1.00 -36.95 371.27 -8.28 -45.23 By element: Atomic # 1 Polarization: 19.80 SS G_CDS: -5.66 Total: 14.14 kcal Atomic # 6 Polarization: 4.98 SS G_CDS: -0.30 Total: 4.68 kcal Atomic # 7 Polarization: -64.08 SS G_CDS: -0.12 Total: -64.20 kcal Atomic # 8 Polarization: -23.19 SS G_CDS: -0.27 Total: -23.46 kcal Atomic # 14 Polarization: 24.70 SS G_CDS: -5.02 Total: 19.67 kcal Atomic # 16 Polarization: 0.84 SS G_CDS: -2.50 Total: -1.66 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -36.95 -8.28 -45.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724910617.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.210 kcal (2) G-P(sol) polarization free energy of solvation -36.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds