Wall clock time and date at job start Sat Apr 11 2020 05:38:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86795 * 120.00152 * 2 1 4 4 H 1.48494 * 109.47071 * 180.27747 * 3 2 1 5 5 H 1.48506 * 109.47211 * 300.27889 * 3 2 1 6 6 H 1.48493 * 109.47327 * 60.27756 * 3 2 1 7 7 C 1.38815 * 119.99673 * 180.28090 * 2 1 3 8 8 H 1.07999 * 119.99858 * 179.72450 * 7 2 1 9 9 N 1.36938 * 119.99817 * 359.71804 * 7 2 1 10 10 C 1.46506 * 119.99589 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.49978 * 299.93716 * 10 9 7 12 12 O 1.42900 * 109.46718 * 59.99870 * 11 10 9 13 13 C 1.53043 * 109.49580 * 179.83731 * 10 9 7 14 14 C 1.53036 * 109.54027 * 301.41786 * 13 10 9 15 15 C 1.53187 * 109.31230 * 298.63421 * 14 13 10 16 16 N 1.46922 * 108.77857 * 54.63534 * 15 14 13 17 17 C 1.34775 * 120.63610 * 126.41416 * 16 15 14 18 18 O 1.21280 * 120.00482 * 179.97438 * 17 16 15 19 19 C 1.50706 * 119.99528 * 359.97438 * 17 16 15 20 20 C 1.52998 * 109.47038 * 179.97438 * 19 17 16 21 21 C 1.50701 * 109.47345 * 180.02562 * 20 19 17 22 22 C 1.33632 * 122.74962 * 124.73491 * 21 20 19 23 23 S 1.76200 * 107.92719 * 179.97438 * 22 21 20 24 24 C 1.70977 * 90.27955 * 0.27336 * 23 22 21 25 25 N 1.29029 * 110.16653 * 359.84240 * 24 23 22 26 26 C 1.46931 * 118.73833 * 306.39404 * 16 15 14 27 27 H 0.97000 * 120.00043 * 359.72461 * 1 2 3 28 28 H 0.96999 * 120.00331 * 0.02562 * 9 7 2 29 29 H 1.09001 * 109.46778 * 180.02562 * 11 10 9 30 30 H 1.09001 * 109.46916 * 300.00381 * 11 10 9 31 31 H 0.96704 * 113.99357 * 180.02562 * 12 11 10 32 32 H 1.09005 * 109.45284 * 61.43647 * 13 10 9 33 33 H 1.08998 * 109.45954 * 181.39024 * 13 10 9 34 34 H 1.09002 * 109.49735 * 178.67894 * 14 13 10 35 35 H 1.09003 * 109.52693 * 58.59749 * 14 13 10 36 36 H 1.09002 * 109.58915 * 294.84962 * 15 14 13 37 37 H 1.09002 * 109.58989 * 174.42575 * 15 14 13 38 38 H 1.08993 * 109.47509 * 300.00479 * 19 17 16 39 39 H 1.08998 * 109.46966 * 60.00776 * 19 17 16 40 40 H 1.09000 * 109.47627 * 300.00921 * 20 19 17 41 41 H 1.09002 * 109.46786 * 60.00164 * 20 19 17 42 42 H 1.08004 * 126.03763 * 0.03974 * 22 21 20 43 43 H 1.07999 * 124.91822 * 179.84339 * 24 23 22 44 44 H 1.08998 * 109.58577 * 293.82227 * 26 16 15 45 45 H 1.09002 * 109.58928 * 173.39363 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7101 1.3463 -0.0068 5 1 1.8864 2.3994 -1.2091 6 1 1.8966 2.3934 1.2158 7 6 2.0102 -1.2022 -0.0059 8 1 3.0902 -1.2022 -0.0104 9 7 1.3254 -2.3881 -0.0059 10 6 2.0579 -3.6568 -0.0115 11 6 2.9318 -3.7365 -1.2649 12 8 3.8606 -2.6505 -1.2677 13 6 1.0639 -4.8205 -0.0062 14 6 0.1677 -4.7224 1.2304 15 6 1.0319 -4.8190 2.4915 16 7 2.0823 -3.7939 2.4247 17 6 2.2528 -2.9185 3.4352 18 8 3.1237 -2.0771 3.3683 19 6 1.3611 -2.9851 4.6483 20 6 1.7631 -1.8894 5.6376 21 6 0.8719 -1.9564 6.8509 22 6 1.3498 -2.0739 8.0933 23 16 -0.0207 -2.1146 9.2000 24 6 -1.1004 -1.9776 7.8813 25 7 -0.4428 -1.9102 6.7732 26 6 2.9436 -3.7414 1.2355 27 1 -0.4850 0.8400 0.0040 28 1 0.3555 -2.3880 -0.0021 29 1 3.4762 -4.6808 -1.2688 30 1 2.3010 -3.6774 -2.1519 31 1 4.4481 -2.6376 -2.0357 32 1 0.4488 -4.7766 -0.9050 33 1 1.6094 -5.7639 0.0146 34 1 -0.5553 -5.5381 1.2214 35 1 -0.3599 -3.7686 1.2232 36 1 1.4888 -5.8071 2.5466 37 1 0.4127 -4.6509 3.3727 38 1 0.3242 -2.8392 4.3456 39 1 1.4670 -3.9601 5.1239 40 1 2.8000 -2.0357 5.9402 41 1 1.6576 -0.9142 5.1622 42 1 2.3921 -2.1324 8.3703 43 1 -2.1769 -1.9513 7.9639 44 1 3.5563 -4.6416 1.1881 45 1 3.5858 -2.8622 1.2879 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724910617.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:26 Heat of formation + Delta-G solvation = -47.348992 kcal Electronic energy + Delta-G solvation = -28523.586260 eV Core-core repulsion = 24667.376139 eV Total energy + Delta-G solvation = -3856.210121 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.34915 -40.72994 -39.24040 -37.12906 -35.55243 -34.52834 -33.84777 -32.50679 -31.00551 -30.29541 -27.51091 -26.51984 -25.98788 -25.53789 -24.50458 -22.91351 -20.67445 -20.48027 -19.64169 -19.12535 -18.87780 -17.88577 -17.79875 -17.11749 -16.87994 -16.42016 -16.28422 -15.87983 -15.64216 -15.35850 -15.21315 -14.74859 -14.56883 -14.45391 -14.22149 -14.04457 -13.92078 -13.54424 -13.50439 -13.18311 -12.99307 -12.92746 -12.68999 -12.54137 -12.43499 -12.04721 -12.02986 -11.86979 -11.73872 -11.39190 -11.28000 -10.91229 -10.59539 -10.56573 -10.55347 -10.40424 -9.72572 -9.45231 -8.78611 -7.81306 -5.01802 -0.19102 0.52118 0.79097 1.37581 1.41934 1.50566 1.78433 1.82291 2.30498 2.63573 3.29827 3.40643 3.67614 3.69830 3.89486 3.94942 4.02943 4.10206 4.12640 4.21016 4.29064 4.37913 4.44457 4.52065 4.56522 4.58683 4.63111 4.71555 4.79429 4.84830 4.94938 4.96289 5.03567 5.06468 5.06919 5.21021 5.23827 5.47951 5.54155 5.79900 5.92267 6.44485 6.65037 6.82779 7.16669 7.41476 7.52684 8.22817 8.44842 9.43407 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011942 B = 0.003633 C = 0.003148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2344.071606 B = 7706.249252 C = 8891.018085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.978 5.978 2 C -0.090 4.090 3 Si 0.944 3.056 4 H -0.278 1.278 5 H -0.295 1.295 6 H -0.310 1.310 7 C -0.163 4.163 8 H 0.081 0.919 9 N -0.711 5.711 10 C 0.174 3.826 11 C 0.075 3.925 12 O -0.574 6.574 13 C -0.109 4.109 14 C -0.129 4.129 15 C 0.106 3.894 16 N -0.597 5.597 17 C 0.505 3.495 18 O -0.590 6.590 19 C -0.110 4.110 20 C -0.025 4.025 21 C 0.050 3.950 22 C -0.257 4.257 23 S 0.169 5.831 24 C 0.016 3.984 25 N -0.506 5.506 26 C 0.116 3.884 27 H 0.239 0.761 28 H 0.370 0.630 29 H 0.068 0.932 30 H 0.035 0.965 31 H 0.375 0.625 32 H 0.065 0.935 33 H 0.103 0.897 34 H 0.107 0.893 35 H 0.036 0.964 36 H 0.101 0.899 37 H 0.091 0.909 38 H 0.089 0.911 39 H 0.118 0.882 40 H 0.092 0.908 41 H 0.048 0.952 42 H 0.196 0.804 43 H 0.226 0.774 44 H 0.077 0.923 45 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.102 -17.309 14.697 22.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.633 5.633 2 C -0.280 4.280 3 Si 0.778 3.222 4 H -0.203 1.203 5 H -0.222 1.222 6 H -0.239 1.239 7 C -0.296 4.296 8 H 0.098 0.902 9 N -0.350 5.350 10 C 0.083 3.917 11 C -0.005 4.005 12 O -0.380 6.380 13 C -0.147 4.147 14 C -0.167 4.167 15 C -0.016 4.016 16 N -0.328 5.328 17 C 0.294 3.706 18 O -0.470 6.470 19 C -0.150 4.150 20 C -0.065 4.065 21 C -0.082 4.082 22 C -0.396 4.396 23 S 0.421 5.579 24 C -0.281 4.281 25 N -0.221 5.221 26 C -0.008 4.008 27 H 0.048 0.952 28 H 0.203 0.797 29 H 0.086 0.914 30 H 0.053 0.947 31 H 0.223 0.777 32 H 0.084 0.916 33 H 0.121 0.879 34 H 0.125 0.875 35 H 0.055 0.945 36 H 0.119 0.881 37 H 0.110 0.890 38 H 0.107 0.893 39 H 0.136 0.864 40 H 0.110 0.890 41 H 0.067 0.933 42 H 0.213 0.787 43 H 0.242 0.758 44 H 0.095 0.905 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -0.244 -16.672 15.805 22.975 hybrid contribution 0.712 1.801 -1.723 2.592 sum 0.468 -14.871 14.082 20.486 Atomic orbital electron populations 1.69773 1.05765 1.24402 1.63363 1.25171 0.96045 0.99728 1.07038 0.85426 0.78335 0.82534 0.75911 1.20348 1.22237 1.23935 1.19659 0.91515 0.84482 1.33916 0.90174 1.42561 1.04816 1.00404 1.87175 1.20451 0.91951 0.87186 0.92152 1.22731 0.91039 0.88840 0.97882 1.86803 1.51323 1.50974 1.48874 1.21629 0.97164 0.97147 0.98711 1.21843 0.98262 1.02347 0.94293 1.21993 0.88924 0.91441 0.99223 1.47953 1.34593 1.32672 1.17589 1.21113 0.84335 0.79822 0.85304 1.90649 1.37509 1.37435 1.81452 1.21427 0.99369 1.01564 0.92666 1.19773 0.97454 0.98469 0.90832 1.20205 0.89447 1.03169 0.95343 1.27172 1.05698 1.11662 0.95052 1.83698 0.96292 1.66091 1.11808 1.28950 1.06514 1.02550 0.90090 1.66115 1.07699 1.16883 1.31410 1.21882 0.92863 1.00888 0.85209 0.95217 0.79676 0.91437 0.94697 0.77740 0.91594 0.87911 0.87516 0.94481 0.88127 0.89047 0.89269 0.86383 0.88986 0.93320 0.78653 0.75783 0.90504 0.93094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -64.08 13.06 21.65 0.28 -63.80 16 2 C -0.09 -5.68 5.50 84.86 0.47 -5.21 16 3 Si 0.94 53.05 29.55 68.60 2.03 55.08 16 4 H -0.28 -15.29 7.11 99.48 0.71 -14.58 16 5 H -0.29 -16.13 7.11 99.48 0.71 -15.42 16 6 H -0.31 -17.92 7.11 99.48 0.71 -17.21 16 7 C -0.16 -9.59 8.21 84.03 0.69 -8.90 16 8 H 0.08 4.91 5.28 -2.91 -0.02 4.89 16 9 N -0.71 -35.62 4.75 -302.98 -1.44 -37.06 16 10 C 0.17 6.42 0.68 3.68 0.00 6.43 16 11 C 0.08 2.50 6.08 71.98 0.44 2.94 16 12 O -0.57 -22.13 10.10 -148.98 -1.51 -23.63 16 13 C -0.11 -2.92 4.76 30.62 0.15 -2.77 16 14 C -0.13 -3.38 5.91 30.67 0.18 -3.19 16 15 C 0.11 2.58 6.34 86.36 0.55 3.13 16 16 N -0.60 -20.89 2.89 -818.90 -2.37 -23.26 16 17 C 0.50 20.26 7.70 87.66 0.67 20.93 16 18 O -0.59 -29.66 15.40 -3.03 -0.05 -29.71 16 19 C -0.11 -3.45 3.95 29.85 0.12 -3.33 16 20 C -0.02 -0.79 5.00 29.85 0.15 -0.64 16 21 C 0.05 1.34 6.08 41.52 0.25 1.59 16 22 C -0.26 -5.16 11.07 66.77 0.74 -4.42 16 23 S 0.17 2.52 23.22 -56.49 -1.31 1.21 16 24 C 0.02 0.31 12.23 130.65 1.60 1.91 16 25 N -0.51 -14.10 10.34 -191.56 -1.98 -16.08 16 26 C 0.12 4.39 4.85 86.36 0.42 4.81 16 27 H 0.24 15.49 8.31 -92.71 -0.77 14.72 16 28 H 0.37 20.12 6.43 -92.71 -0.60 19.52 16 29 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 30 H 0.03 1.18 8.14 -2.39 -0.02 1.17 16 31 H 0.38 10.46 9.12 -74.05 -0.68 9.79 16 32 H 0.07 1.80 8.14 -2.38 -0.02 1.78 16 33 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 34 H 0.11 1.97 8.14 -2.39 -0.02 1.95 16 35 H 0.04 1.32 6.75 -2.39 -0.02 1.30 16 36 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 37 H 0.09 2.01 5.93 -2.39 -0.01 2.00 16 38 H 0.09 3.01 7.63 -2.39 -0.02 2.99 16 39 H 0.12 2.77 7.94 -2.39 -0.02 2.75 16 40 H 0.09 2.71 7.98 -2.39 -0.02 2.69 16 41 H 0.05 1.95 8.10 -2.39 -0.02 1.93 16 42 H 0.20 2.99 8.06 -2.91 -0.02 2.97 16 43 H 0.23 2.67 8.06 -2.91 -0.02 2.64 16 44 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 45 H 0.05 2.49 5.70 -2.39 -0.01 2.48 16 Total: -1.00 -87.84 371.27 -0.16 -88.00 By element: Atomic # 1 Polarization: 36.23 SS G_CDS: -0.24 Total: 35.99 kcal Atomic # 6 Polarization: 6.84 SS G_CDS: 6.42 Total: 13.27 kcal Atomic # 7 Polarization: -134.70 SS G_CDS: -5.50 Total: -140.20 kcal Atomic # 8 Polarization: -51.78 SS G_CDS: -1.55 Total: -53.34 kcal Atomic # 14 Polarization: 53.05 SS G_CDS: 2.03 Total: 55.08 kcal Atomic # 16 Polarization: 2.52 SS G_CDS: -1.31 Total: 1.21 kcal Total: -87.84 -0.16 -88.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724910617.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.646 kcal (2) G-P(sol) polarization free energy of solvation -87.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds