Wall clock time and date at job start Sat Apr 11 2020 05:38:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86795 * 120.00030 * 2 1 4 4 H 1.48504 * 109.46987 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47179 * 299.99496 * 3 2 1 6 6 H 1.48495 * 109.47354 * 60.00000 * 3 2 1 7 7 C 1.38814 * 119.99916 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00351 * 182.36475 * 7 2 1 9 9 N 1.36935 * 120.00188 * 2.37289 * 7 2 1 10 10 C 1.46922 * 120.63559 * 143.81068 * 9 7 2 11 11 C 1.53196 * 108.77797 * 126.36642 * 10 9 7 12 12 C 1.53042 * 109.31102 * 54.63485 * 11 10 9 13 13 C 1.53036 * 109.53908 * 298.63455 * 12 11 10 14 14 C 1.53004 * 109.52414 * 181.33365 * 13 12 11 15 15 O 1.42896 * 109.46986 * 174.19844 * 14 13 12 16 16 N 1.46496 * 109.49874 * 301.41754 * 13 12 11 17 17 C 1.34787 * 119.99819 * 303.36153 * 16 13 12 18 18 O 1.21279 * 119.99898 * 354.84603 * 17 16 13 19 19 C 1.50692 * 119.99854 * 174.85083 * 17 16 13 20 20 C 1.53005 * 109.47126 * 179.97438 * 19 17 16 21 21 C 1.50702 * 109.47177 * 179.97438 * 20 19 17 22 22 C 1.33643 * 126.03454 * 90.00303 * 21 20 19 23 23 N 1.31777 * 114.49506 * 180.02562 * 22 21 20 24 24 C 1.29027 * 117.12904 * 359.97438 * 23 22 21 25 25 S 1.70981 * 110.16652 * 359.73381 * 24 23 22 26 26 C 1.46933 * 120.62949 * 323.78326 * 9 7 2 27 27 H 0.97002 * 120.00132 * 0.02562 * 1 2 3 28 28 H 1.08997 * 109.58576 * 246.15460 * 10 9 7 29 29 H 1.09002 * 109.58288 * 6.43669 * 10 9 7 30 30 H 1.08997 * 109.49728 * 174.58433 * 11 10 9 31 31 H 1.09002 * 109.49648 * 294.65335 * 11 10 9 32 32 H 1.08998 * 109.45584 * 178.61334 * 12 11 10 33 33 H 1.09003 * 109.45733 * 58.65844 * 12 11 10 34 34 H 1.08999 * 109.46465 * 294.19593 * 14 13 12 35 35 H 1.08998 * 109.46856 * 54.19204 * 14 13 12 36 36 H 0.96703 * 113.99943 * 180.02562 * 15 14 13 37 37 H 0.96998 * 120.00524 * 123.35967 * 16 13 12 38 38 H 1.08995 * 109.47293 * 300.00055 * 19 17 16 39 39 H 1.09005 * 109.47257 * 59.99862 * 19 17 16 40 40 H 1.09001 * 109.46953 * 299.99927 * 20 19 17 41 41 H 1.08996 * 109.47045 * 59.99709 * 20 19 17 42 42 H 1.07996 * 122.74934 * 359.97438 * 22 21 20 43 43 H 1.08001 * 124.92050 * 179.97438 * 24 23 22 44 44 H 1.09000 * 109.58415 * 113.84322 * 26 9 7 45 45 H 1.09003 * 109.70238 * 353.49098 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3963 -1.2125 6 1 1.8915 2.3964 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0895 -1.2026 0.0391 9 7 1.3264 -2.3876 -0.0480 10 6 1.8626 -3.5309 -0.7990 11 6 1.9207 -4.7476 0.1300 12 6 0.5364 -4.9876 0.7369 13 6 0.1214 -3.7683 1.5633 14 6 -1.2480 -4.0220 2.1969 15 8 -1.5739 -2.9427 3.0748 16 7 1.1114 -3.5317 2.6168 17 6 1.4027 -4.5079 3.4994 18 8 0.7796 -5.5482 3.4804 19 6 2.5023 -4.3065 4.5099 20 6 2.6263 -5.5557 5.3846 21 6 3.7264 -5.3546 6.3947 22 6 3.5856 -4.8336 7.6173 23 7 4.7026 -4.7623 8.3128 24 6 5.7777 -5.1946 7.7453 25 16 5.4241 -5.7719 6.1752 26 6 0.0428 -2.5406 0.6505 27 1 -0.4850 0.8401 -0.0004 28 1 1.2124 -3.7489 -1.6462 29 1 2.8642 -3.2947 -1.1584 30 1 2.2257 -5.6257 -0.4392 31 1 2.6408 -4.5626 0.9272 32 1 0.5692 -5.8676 1.3792 33 1 -0.1874 -5.1483 -0.0621 34 1 -2.0028 -4.0941 1.4138 35 1 -1.2200 -4.9540 2.7615 36 1 -2.4308 -3.0371 3.5129 37 1 1.5574 -2.6726 2.6793 38 1 3.4447 -4.1308 3.9912 39 1 2.2668 -3.4464 5.1367 40 1 1.6838 -5.7310 5.9033 41 1 2.8616 -6.4160 4.7580 42 1 2.6345 -4.4978 8.0032 43 1 6.7583 -5.1955 8.1979 44 1 -0.7558 -2.6777 -0.0786 45 1 -0.1578 -1.6522 1.2494 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733587863.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:45 Heat of formation + Delta-G solvation = -24.110974 kcal Electronic energy + Delta-G solvation = -28272.703089 eV Core-core repulsion = 24417.500644 eV Total energy + Delta-G solvation = -3855.202445 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.06651 -39.69418 -37.53079 -35.86969 -34.20641 -33.64302 -32.53815 -30.52860 -29.88062 -29.00756 -25.95353 -25.45179 -25.04234 -23.51321 -22.20578 -20.88340 -20.21497 -19.86125 -18.64764 -18.18708 -17.05123 -16.74596 -16.62292 -15.83886 -15.24771 -15.13434 -14.81728 -14.48690 -14.17379 -14.08227 -13.95771 -13.72736 -13.34470 -13.13785 -12.94983 -12.66605 -12.35516 -12.31488 -12.11972 -11.90716 -11.71274 -11.42013 -11.15389 -10.96349 -10.91151 -10.81847 -10.49443 -10.19648 -9.97669 -9.88223 -9.83338 -9.61568 -9.59926 -9.42187 -9.13702 -8.87661 -8.53717 -8.32099 -6.60150 -5.84861 -3.39594 0.52132 1.17413 1.57303 2.66068 3.09463 3.32259 3.40617 3.41626 3.71748 4.17491 4.42003 4.68835 4.74125 4.91008 5.01024 5.07161 5.27602 5.34230 5.37617 5.42292 5.58071 5.62461 5.72134 5.83654 5.86165 5.90395 5.94609 5.97917 6.04465 6.14159 6.33093 6.40111 6.50222 6.51774 6.68011 6.82210 6.98275 7.09149 7.35298 7.50627 7.72170 7.74997 8.08713 8.22137 8.46831 8.77436 9.17431 9.76045 10.37199 11.21059 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011206 B = 0.003406 C = 0.003048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2497.977329 B = 8218.886541 C = 9184.225404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.013 3.987 3 Si 0.901 3.099 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.289 1.289 7 C -0.261 4.261 8 H 0.064 0.936 9 N -0.591 5.591 10 C 0.143 3.857 11 C -0.127 4.127 12 C -0.121 4.121 13 C 0.155 3.845 14 C 0.071 3.929 15 O -0.559 6.559 16 N -0.682 5.682 17 C 0.514 3.486 18 O -0.560 6.560 19 C -0.138 4.138 20 C -0.024 4.024 21 C -0.205 4.205 22 C 0.027 3.973 23 N -0.470 5.470 24 C 0.008 3.992 25 S 0.121 5.879 26 C 0.173 3.827 27 H 0.255 0.745 28 H 0.017 0.983 29 H 0.052 0.948 30 H 0.048 0.952 31 H 0.055 0.945 32 H 0.071 0.929 33 H 0.059 0.941 34 H 0.042 0.958 35 H 0.056 0.944 36 H 0.366 0.634 37 H 0.408 0.592 38 H 0.091 0.909 39 H 0.093 0.907 40 H 0.093 0.907 41 H 0.084 0.916 42 H 0.176 0.824 43 H 0.197 0.803 44 H 0.027 0.973 45 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.331 -11.369 10.410 16.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.186 4.186 3 Si 0.731 3.269 4 H -0.202 1.202 5 H -0.215 1.215 6 H -0.216 1.216 7 C -0.390 4.390 8 H 0.081 0.919 9 N -0.313 5.313 10 C 0.016 3.984 11 C -0.167 4.167 12 C -0.159 4.159 13 C 0.067 3.933 14 C -0.009 4.009 15 O -0.362 6.362 16 N -0.331 5.331 17 C 0.300 3.700 18 O -0.441 6.441 19 C -0.179 4.179 20 C -0.064 4.064 21 C -0.326 4.326 22 C -0.124 4.124 23 N -0.183 5.183 24 C -0.289 4.289 25 S 0.373 5.627 26 C 0.046 3.954 27 H 0.066 0.934 28 H 0.035 0.965 29 H 0.071 0.929 30 H 0.067 0.933 31 H 0.074 0.926 32 H 0.090 0.910 33 H 0.078 0.922 34 H 0.060 0.940 35 H 0.074 0.926 36 H 0.211 0.789 37 H 0.243 0.757 38 H 0.110 0.890 39 H 0.111 0.889 40 H 0.111 0.889 41 H 0.103 0.897 42 H 0.193 0.807 43 H 0.214 0.786 44 H 0.045 0.955 45 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 6.067 -11.922 9.922 16.655 hybrid contribution -0.657 1.436 0.486 1.652 sum 5.409 -10.486 10.408 15.734 Atomic orbital electron populations 1.69894 1.05313 1.25540 1.53354 1.25347 0.95490 0.98304 0.99483 0.86248 0.79370 0.83968 0.77343 1.20245 1.21513 1.21608 1.19150 0.90412 0.82954 1.46502 0.91851 1.43966 1.22373 1.09425 1.55580 1.20985 0.97394 0.87647 0.92340 1.21915 0.96461 0.98622 0.99665 1.21731 0.97653 0.97859 0.98682 1.21264 0.85146 0.99287 0.87622 1.22580 0.96194 0.89631 0.92458 1.86569 1.40711 1.46430 1.62528 1.45830 1.41827 1.16158 1.29305 1.20343 0.84065 0.83925 0.81686 1.90575 1.52788 1.28044 1.72677 1.21679 0.99239 0.99466 0.97475 1.19766 0.94625 0.98059 0.93977 1.26140 0.98000 1.07781 1.00669 1.21798 0.97676 1.02090 0.90812 1.66313 0.98359 1.17720 1.35946 1.28340 1.01902 1.02780 0.95881 1.84150 1.03007 1.58081 1.17495 1.21156 0.87392 0.94312 0.92516 0.93434 0.96550 0.92916 0.93283 0.92615 0.91026 0.92190 0.94012 0.92577 0.78868 0.75677 0.89022 0.88854 0.88865 0.89738 0.80716 0.78649 0.95462 0.87119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.83 10.75 55.49 0.60 -24.24 16 2 C 0.01 0.35 5.29 -17.43 -0.09 0.26 16 3 Si 0.90 20.82 29.55 -169.99 -5.02 15.80 16 4 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 7 C -0.26 -6.69 9.54 -15.06 -0.14 -6.83 16 8 H 0.06 1.61 7.83 -52.49 -0.41 1.20 16 9 N -0.59 -13.86 2.91 -172.31 -0.50 -14.36 16 10 C 0.14 2.90 6.52 -3.71 -0.02 2.88 16 11 C -0.13 -2.24 5.93 -26.61 -0.16 -2.39 16 12 C -0.12 -2.14 4.42 -26.69 -0.12 -2.25 16 13 C 0.15 2.90 0.45 -131.70 -0.06 2.84 16 14 C 0.07 1.22 5.68 37.16 0.21 1.43 16 15 O -0.56 -9.66 13.08 -35.23 -0.46 -10.12 16 16 N -0.68 -12.00 3.94 -47.50 -0.19 -12.18 16 17 C 0.51 8.15 7.12 -10.98 -0.08 8.07 16 18 O -0.56 -9.91 12.31 5.56 0.07 -9.84 16 19 C -0.14 -1.70 5.68 -27.88 -0.16 -1.85 16 20 C -0.02 -0.27 5.04 -27.88 -0.14 -0.41 16 21 C -0.20 -2.17 5.85 -35.92 -0.21 -2.38 16 22 C 0.03 0.29 11.25 -19.19 -0.22 0.08 16 23 N -0.47 -5.49 10.54 -15.75 -0.17 -5.66 16 24 C 0.01 0.08 12.23 51.58 0.63 0.71 16 25 S 0.12 1.11 23.22 -107.50 -2.50 -1.39 16 26 C 0.17 3.92 3.79 -3.71 -0.01 3.90 16 27 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 28 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.05 1.05 7.93 -51.93 -0.41 0.64 16 30 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.06 1.01 7.42 -51.93 -0.39 0.62 16 32 H 0.07 1.28 6.15 -51.93 -0.32 0.97 16 33 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 35 H 0.06 0.98 6.43 -51.93 -0.33 0.64 16 36 H 0.37 4.53 9.12 45.56 0.42 4.95 16 37 H 0.41 7.59 8.48 -40.82 -0.35 7.24 16 38 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 39 H 0.09 1.08 8.14 -51.93 -0.42 0.65 16 40 H 0.09 1.05 8.10 -51.93 -0.42 0.63 16 41 H 0.08 0.98 8.10 -51.93 -0.42 0.56 16 42 H 0.18 1.65 8.06 -52.49 -0.42 1.23 16 43 H 0.20 1.15 8.06 -52.49 -0.42 0.73 16 44 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 45 H 0.11 2.88 5.92 -51.93 -0.31 2.57 16 LS Contribution 373.33 15.07 5.63 5.63 Total: -1.00 -30.70 373.33 -9.00 -39.70 By element: Atomic # 1 Polarization: 18.50 SS G_CDS: -5.88 Total: 12.62 kcal Atomic # 6 Polarization: 4.63 SS G_CDS: -0.57 Total: 4.06 kcal Atomic # 7 Polarization: -56.19 SS G_CDS: -0.26 Total: -56.45 kcal Atomic # 8 Polarization: -19.57 SS G_CDS: -0.39 Total: -19.97 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Atomic # 16 Polarization: 1.11 SS G_CDS: -2.50 Total: -1.39 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -30.70 -9.00 -39.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733587863.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.589 kcal (2) G-P(sol) polarization free energy of solvation -30.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds