Wall clock time and date at job start Sat Apr 11 2020 05:38:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86795 * 120.00030 * 2 1 4 4 H 1.48504 * 109.46987 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47179 * 299.99496 * 3 2 1 6 6 H 1.48495 * 109.47354 * 60.00000 * 3 2 1 7 7 C 1.38814 * 119.99916 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00351 * 182.36475 * 7 2 1 9 9 N 1.36935 * 120.00188 * 2.37289 * 7 2 1 10 10 C 1.46922 * 120.63559 * 143.81068 * 9 7 2 11 11 C 1.53196 * 108.77797 * 126.36642 * 10 9 7 12 12 C 1.53042 * 109.31102 * 54.63485 * 11 10 9 13 13 C 1.53036 * 109.53908 * 298.63455 * 12 11 10 14 14 C 1.53004 * 109.52414 * 181.33365 * 13 12 11 15 15 O 1.42896 * 109.46986 * 174.19844 * 14 13 12 16 16 N 1.46496 * 109.49874 * 301.41754 * 13 12 11 17 17 C 1.34787 * 119.99819 * 303.36153 * 16 13 12 18 18 O 1.21279 * 119.99898 * 354.84603 * 17 16 13 19 19 C 1.50692 * 119.99854 * 174.85083 * 17 16 13 20 20 C 1.53005 * 109.47126 * 179.97438 * 19 17 16 21 21 C 1.50702 * 109.47177 * 179.97438 * 20 19 17 22 22 C 1.33643 * 126.03454 * 90.00303 * 21 20 19 23 23 N 1.31777 * 114.49506 * 180.02562 * 22 21 20 24 24 C 1.29027 * 117.12904 * 359.97438 * 23 22 21 25 25 S 1.70981 * 110.16652 * 359.73381 * 24 23 22 26 26 C 1.46933 * 120.62949 * 323.78326 * 9 7 2 27 27 H 0.97002 * 120.00132 * 0.02562 * 1 2 3 28 28 H 1.08997 * 109.58576 * 246.15460 * 10 9 7 29 29 H 1.09002 * 109.58288 * 6.43669 * 10 9 7 30 30 H 1.08997 * 109.49728 * 174.58433 * 11 10 9 31 31 H 1.09002 * 109.49648 * 294.65335 * 11 10 9 32 32 H 1.08998 * 109.45584 * 178.61334 * 12 11 10 33 33 H 1.09003 * 109.45733 * 58.65844 * 12 11 10 34 34 H 1.08999 * 109.46465 * 294.19593 * 14 13 12 35 35 H 1.08998 * 109.46856 * 54.19204 * 14 13 12 36 36 H 0.96703 * 113.99943 * 180.02562 * 15 14 13 37 37 H 0.96998 * 120.00524 * 123.35967 * 16 13 12 38 38 H 1.08995 * 109.47293 * 300.00055 * 19 17 16 39 39 H 1.09005 * 109.47257 * 59.99862 * 19 17 16 40 40 H 1.09001 * 109.46953 * 299.99927 * 20 19 17 41 41 H 1.08996 * 109.47045 * 59.99709 * 20 19 17 42 42 H 1.07996 * 122.74934 * 359.97438 * 22 21 20 43 43 H 1.08001 * 124.92050 * 179.97438 * 24 23 22 44 44 H 1.09000 * 109.58415 * 113.84322 * 26 9 7 45 45 H 1.09003 * 109.70238 * 353.49098 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3963 -1.2125 6 1 1.8915 2.3964 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0895 -1.2026 0.0391 9 7 1.3264 -2.3876 -0.0480 10 6 1.8626 -3.5309 -0.7990 11 6 1.9207 -4.7476 0.1300 12 6 0.5364 -4.9876 0.7369 13 6 0.1214 -3.7683 1.5633 14 6 -1.2480 -4.0220 2.1969 15 8 -1.5739 -2.9427 3.0748 16 7 1.1114 -3.5317 2.6168 17 6 1.4027 -4.5079 3.4994 18 8 0.7796 -5.5482 3.4804 19 6 2.5023 -4.3065 4.5099 20 6 2.6263 -5.5557 5.3846 21 6 3.7264 -5.3546 6.3947 22 6 3.5856 -4.8336 7.6173 23 7 4.7026 -4.7623 8.3128 24 6 5.7777 -5.1946 7.7453 25 16 5.4241 -5.7719 6.1752 26 6 0.0428 -2.5406 0.6505 27 1 -0.4850 0.8401 -0.0004 28 1 1.2124 -3.7489 -1.6462 29 1 2.8642 -3.2947 -1.1584 30 1 2.2257 -5.6257 -0.4392 31 1 2.6408 -4.5626 0.9272 32 1 0.5692 -5.8676 1.3792 33 1 -0.1874 -5.1483 -0.0621 34 1 -2.0028 -4.0941 1.4138 35 1 -1.2200 -4.9540 2.7615 36 1 -2.4308 -3.0371 3.5129 37 1 1.5574 -2.6726 2.6793 38 1 3.4447 -4.1308 3.9912 39 1 2.2668 -3.4464 5.1367 40 1 1.6838 -5.7310 5.9033 41 1 2.8616 -6.4160 4.7580 42 1 2.6345 -4.4978 8.0032 43 1 6.7583 -5.1955 8.1979 44 1 -0.7558 -2.6777 -0.0786 45 1 -0.1578 -1.6522 1.2494 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733587863.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:44 Heat of formation + Delta-G solvation = -45.615858 kcal Electronic energy + Delta-G solvation = -28273.635610 eV Core-core repulsion = 24417.500644 eV Total energy + Delta-G solvation = -3856.134967 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.39543 -40.54503 -38.97930 -37.33491 -35.44276 -35.01479 -34.14970 -32.06788 -31.50021 -30.01652 -27.31496 -26.80876 -26.58304 -24.45770 -23.90908 -22.33899 -21.37359 -20.90263 -20.07775 -18.99586 -18.78729 -18.16950 -17.96099 -17.03961 -16.64481 -16.33597 -16.17435 -15.78857 -15.59063 -15.21681 -15.12496 -14.86160 -14.76579 -14.57478 -14.34205 -14.04612 -13.85019 -13.54677 -13.47425 -13.12426 -12.95426 -12.78268 -12.75977 -12.62588 -12.52689 -12.21857 -11.91705 -11.83232 -11.65495 -11.45921 -11.21076 -11.00600 -10.60070 -10.53256 -10.39471 -10.14091 -9.84747 -9.72044 -8.51431 -7.83195 -5.40317 -0.22668 0.44743 0.83285 1.47942 1.51187 1.59615 1.83017 1.87623 2.43311 2.51647 3.32852 3.39252 3.48065 3.68914 3.75101 4.00710 4.07502 4.12746 4.15026 4.27438 4.38290 4.40603 4.44238 4.51323 4.52175 4.64104 4.70586 4.84630 4.88172 4.98294 5.01045 5.02778 5.08941 5.16189 5.23277 5.24239 5.36574 5.51622 5.68061 5.83236 5.85048 6.49061 6.75927 6.84709 6.96126 7.20543 7.44469 7.86514 8.43078 9.20330 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011206 B = 0.003406 C = 0.003048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2497.977329 B = 8218.886541 C = 9184.225404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C -0.036 4.036 3 Si 0.962 3.038 4 H -0.266 1.266 5 H -0.296 1.296 6 H -0.293 1.293 7 C -0.261 4.261 8 H 0.066 0.934 9 N -0.604 5.604 10 C 0.140 3.860 11 C -0.115 4.115 12 C -0.115 4.115 13 C 0.158 3.842 14 C 0.077 3.923 15 O -0.578 6.578 16 N -0.688 5.688 17 C 0.515 3.485 18 O -0.576 6.576 19 C -0.129 4.129 20 C -0.013 4.013 21 C -0.220 4.220 22 C 0.020 3.980 23 N -0.503 5.503 24 C 0.014 3.986 25 S 0.144 5.856 26 C 0.189 3.811 27 H 0.249 0.751 28 H 0.013 0.987 29 H 0.055 0.945 30 H 0.076 0.924 31 H 0.052 0.948 32 H 0.075 0.925 33 H 0.062 0.938 34 H 0.047 0.953 35 H 0.060 0.940 36 H 0.387 0.613 37 H 0.402 0.598 38 H 0.100 0.900 39 H 0.102 0.898 40 H 0.090 0.910 41 H 0.080 0.920 42 H 0.182 0.818 43 H 0.227 0.773 44 H -0.001 1.001 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.053 -12.412 11.173 18.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.233 4.233 3 Si 0.791 3.209 4 H -0.190 1.190 5 H -0.223 1.223 6 H -0.220 1.220 7 C -0.391 4.391 8 H 0.084 0.916 9 N -0.327 5.327 10 C 0.015 3.985 11 C -0.154 4.154 12 C -0.153 4.153 13 C 0.070 3.930 14 C -0.003 4.003 15 O -0.384 6.384 16 N -0.336 5.336 17 C 0.303 3.697 18 O -0.458 6.458 19 C -0.169 4.169 20 C -0.053 4.053 21 C -0.341 4.341 22 C -0.131 4.131 23 N -0.217 5.217 24 C -0.283 4.283 25 S 0.397 5.603 26 C 0.063 3.937 27 H 0.058 0.942 28 H 0.031 0.969 29 H 0.074 0.926 30 H 0.094 0.906 31 H 0.071 0.929 32 H 0.094 0.906 33 H 0.081 0.919 34 H 0.065 0.935 35 H 0.078 0.922 36 H 0.235 0.765 37 H 0.236 0.764 38 H 0.119 0.881 39 H 0.120 0.880 40 H 0.108 0.892 41 H 0.098 0.902 42 H 0.199 0.801 43 H 0.243 0.757 44 H 0.017 0.983 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 7.799 -13.001 10.694 18.553 hybrid contribution -1.163 1.719 0.251 2.091 sum 6.635 -11.282 10.945 17.062 Atomic orbital electron populations 1.70077 1.06590 1.25585 1.55010 1.25984 0.96110 1.01141 1.00037 0.85293 0.78806 0.80324 0.76525 1.18984 1.22267 1.21989 1.19409 0.90692 0.83872 1.45167 0.91602 1.44154 1.22331 1.09830 1.56428 1.21096 0.97129 0.87684 0.92618 1.21790 0.96321 0.98180 0.99142 1.21688 0.97828 0.97221 0.98606 1.21041 0.86611 0.97642 0.87695 1.22485 0.95544 0.89617 0.92612 1.86522 1.42496 1.46627 1.62751 1.45826 1.41776 1.16362 1.29620 1.20846 0.84340 0.83046 0.81504 1.90564 1.53573 1.28562 1.73100 1.21642 0.98015 1.00498 0.96746 1.19603 0.94884 0.97129 0.93733 1.26054 0.98776 1.08731 1.00522 1.21988 0.98089 1.01985 0.91006 1.66362 0.99093 1.19328 1.36886 1.28916 1.02563 1.00955 0.95844 1.84066 1.01666 1.57442 1.17166 1.20748 0.86378 0.94699 0.91899 0.94158 0.96936 0.92647 0.90564 0.92883 0.90641 0.91888 0.93513 0.92223 0.76478 0.76396 0.88143 0.87955 0.89175 0.90158 0.80072 0.75656 0.98309 0.90522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -52.63 10.75 21.65 0.23 -52.40 16 2 C -0.04 -1.93 5.29 84.86 0.45 -1.48 16 3 Si 0.96 43.13 29.55 68.60 2.03 45.15 16 4 H -0.27 -11.25 7.11 99.48 0.71 -10.55 16 5 H -0.30 -13.50 7.11 99.48 0.71 -12.79 16 6 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 7 C -0.26 -13.42 9.54 84.03 0.80 -12.62 16 8 H 0.07 3.31 7.83 -2.91 -0.02 3.28 16 9 N -0.60 -28.48 2.91 -699.08 -2.03 -30.51 16 10 C 0.14 5.58 6.52 86.36 0.56 6.14 16 11 C -0.12 -3.83 5.93 30.67 0.18 -3.65 16 12 C -0.12 -3.91 4.42 30.62 0.14 -3.78 16 13 C 0.16 5.89 0.45 3.68 0.00 5.90 16 14 C 0.08 2.62 5.68 71.98 0.41 3.03 16 15 O -0.58 -19.86 13.08 -148.98 -1.95 -21.81 16 16 N -0.69 -23.77 3.94 -422.58 -1.67 -25.44 16 17 C 0.51 15.69 7.12 87.65 0.62 16.32 16 18 O -0.58 -19.57 12.31 -3.03 -0.04 -19.61 16 19 C -0.13 -2.96 5.68 29.85 0.17 -2.79 16 20 C -0.01 -0.27 5.04 29.85 0.15 -0.12 16 21 C -0.22 -4.29 5.85 24.64 0.14 -4.15 16 22 C 0.02 0.41 11.25 83.66 0.94 1.35 16 23 N -0.50 -10.94 10.54 -203.74 -2.15 -13.09 16 24 C 0.01 0.23 12.23 130.65 1.60 1.82 16 25 S 0.14 2.33 23.22 -56.49 -1.31 1.01 16 26 C 0.19 8.76 3.79 86.36 0.33 9.08 16 27 H 0.25 13.85 8.31 -92.71 -0.77 13.08 16 28 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 29 H 0.05 2.15 7.93 -2.39 -0.02 2.13 16 30 H 0.08 2.14 8.14 -2.39 -0.02 2.13 16 31 H 0.05 1.80 7.42 -2.39 -0.02 1.78 16 32 H 0.08 2.56 6.15 -2.39 -0.01 2.55 16 33 H 0.06 2.09 8.14 -2.39 -0.02 2.08 16 34 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 35 H 0.06 2.01 6.43 -2.39 -0.02 2.00 16 36 H 0.39 9.34 9.12 -74.06 -0.68 8.66 16 37 H 0.40 14.89 8.48 -92.71 -0.79 14.11 16 38 H 0.10 2.17 8.14 -2.39 -0.02 2.15 16 39 H 0.10 2.20 8.14 -2.38 -0.02 2.19 16 40 H 0.09 1.92 8.10 -2.39 -0.02 1.90 16 41 H 0.08 1.73 8.10 -2.39 -0.02 1.71 16 42 H 0.18 3.26 8.06 -2.91 -0.02 3.24 16 43 H 0.23 1.96 8.06 -2.91 -0.02 1.94 16 44 H 0.00 -0.06 8.14 -2.39 -0.02 -0.07 16 45 H 0.08 4.12 5.92 -2.39 -0.01 4.10 16 Total: -1.00 -65.69 373.33 -0.83 -66.52 By element: Atomic # 1 Polarization: 35.54 SS G_CDS: -0.44 Total: 35.11 kcal Atomic # 6 Polarization: 8.56 SS G_CDS: 6.50 Total: 15.06 kcal Atomic # 7 Polarization: -115.82 SS G_CDS: -5.62 Total: -121.43 kcal Atomic # 8 Polarization: -39.43 SS G_CDS: -1.99 Total: -41.41 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.15 kcal Atomic # 16 Polarization: 2.33 SS G_CDS: -1.31 Total: 1.01 kcal Total: -65.69 -0.83 -66.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733587863.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.901 kcal (2) G-P(sol) polarization free energy of solvation -65.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds