Wall clock time and date at job start Sat Apr 11 2020 05:39:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31635 * 1 3 3 Si 1.86802 * 119.99825 * 2 1 4 4 H 1.48496 * 109.47172 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47146 * 299.99969 * 3 2 1 6 6 H 1.48504 * 109.47113 * 59.99778 * 3 2 1 7 7 C 1.38798 * 119.99793 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99188 * 180.02562 * 7 2 1 9 9 S 1.76193 * 120.00372 * 0.02562 * 7 2 1 10 10 C 1.80995 * 100.00024 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.46997 * 179.97438 * 10 9 7 12 12 O 1.21280 * 120.00226 * 359.97438 * 11 10 9 13 13 N 1.34782 * 120.00015 * 180.02562 * 11 10 9 14 14 C 1.46499 * 120.00191 * 180.02562 * 13 11 10 15 15 C 1.50699 * 109.47311 * 179.97438 * 14 13 11 16 16 C 1.29822 * 118.55146 * 94.99735 * 15 14 13 17 17 C 1.50144 * 123.27945 * 180.37564 * 16 15 14 18 18 N 1.46840 * 110.27723 * 342.94511 * 17 16 15 19 19 C 1.46897 * 111.00057 * 174.31731 * 18 17 16 20 20 H 1.09005 * 110.43878 * 177.22495 * 19 18 17 21 21 C 1.54623 * 110.48780 * 54.68076 * 19 18 17 22 22 C 1.54828 * 101.60849 * 266.08145 * 21 19 18 23 23 N 1.46768 * 105.49535 * 334.56558 * 22 21 19 24 24 C 1.34420 * 111.29577 * 17.03702 * 23 22 21 25 25 O 1.21282 * 124.94375 * 179.55981 * 24 23 22 26 26 C 1.47235 * 110.20271 * 50.92982 * 18 17 16 27 27 C 1.50304 * 118.55076 * 274.73458 * 15 14 13 28 28 H 0.97001 * 119.99882 * 0.02562 * 1 2 3 29 29 H 1.08998 * 109.47251 * 59.99814 * 10 9 7 30 30 H 1.08998 * 109.47473 * 299.99725 * 10 9 7 31 31 H 0.97005 * 119.99664 * 359.97438 * 13 11 10 32 32 H 1.09001 * 109.47026 * 59.99010 * 14 13 11 33 33 H 1.08998 * 109.46616 * 299.99897 * 14 13 11 34 34 H 1.08001 * 118.36474 * 0.35058 * 16 15 14 35 35 H 1.09003 * 109.33770 * 103.20047 * 17 16 15 36 36 H 1.09007 * 109.33365 * 222.70124 * 17 16 15 37 37 H 1.08998 * 110.97235 * 24.24137 * 21 19 18 38 38 H 1.09006 * 110.97174 * 148.00118 * 21 19 18 39 39 H 1.08997 * 110.22589 * 215.57022 * 22 21 19 40 40 H 1.09004 * 110.32931 * 93.62023 * 22 21 19 41 41 H 0.96992 * 124.35563 * 197.01194 * 23 22 21 42 42 H 1.09002 * 109.64289 * 50.89107 * 26 18 17 43 43 H 1.09003 * 109.63573 * 171.49910 * 26 18 17 44 44 H 1.08999 * 109.42736 * 283.57135 * 27 15 14 45 45 H 1.09001 * 109.43274 * 43.42569 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.7103 1.3465 0.0006 5 1 1.8916 2.3965 -1.2125 6 1 1.8915 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0904 -1.2019 0.0010 9 16 1.1294 -2.7279 0.0005 10 6 2.5159 -3.8913 0.0005 11 6 1.9874 -5.3027 0.0012 12 8 0.7912 -5.5023 0.0021 13 7 2.8442 -6.3431 0.0018 14 6 2.3305 -7.7151 0.0019 15 6 3.4850 -8.6838 0.0020 16 6 3.8964 -9.1586 1.1380 17 6 5.0409 -10.1224 1.2622 18 7 5.3318 -10.7374 -0.0391 19 6 6.5326 -11.5804 0.0336 20 1 6.7120 -12.0707 -0.9233 21 6 6.3900 -12.6293 1.1607 22 6 7.0767 -11.9080 2.3462 23 7 8.0199 -10.9628 1.7369 24 6 7.7344 -10.7561 0.4397 25 8 8.3503 -10.0160 -0.2977 26 6 5.4786 -9.6978 -1.0714 27 6 4.1054 -9.0621 -1.3137 28 1 -0.4850 0.8401 -0.0004 29 1 3.1245 -3.7312 0.8905 30 1 3.1245 -3.7313 -0.8894 31 1 3.8010 -6.1834 0.0015 32 1 1.7222 -7.8753 -0.8883 33 1 1.7215 -7.8749 0.8916 34 1 3.3903 -8.8444 2.0390 35 1 5.9242 -9.5902 1.6155 36 1 4.7809 -10.9011 1.9793 37 1 5.3406 -12.8284 1.3779 38 1 6.9155 -13.5497 0.9059 39 1 7.6115 -12.6274 2.9663 40 1 6.3382 -11.3722 2.9426 41 1 8.7545 -10.5413 2.2095 42 1 6.1826 -8.9390 -0.7297 43 1 5.8409 -10.1480 -1.9956 44 1 3.4588 -9.7727 -1.8285 45 1 4.2243 -8.1699 -1.9285 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734620202.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:17 Heat of formation + Delta-G solvation = -73.958605 kcal Electronic energy + Delta-G solvation = -26467.463033 eV Core-core repulsion = 22610.099032 eV Total energy + Delta-G solvation = -3857.364000 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.12552 -40.71299 -39.33900 -37.59839 -36.24956 -34.59981 -34.14734 -32.02986 -31.52433 -30.58592 -28.71131 -27.70034 -26.57024 -24.73363 -23.49338 -22.71543 -21.81908 -21.18551 -19.93727 -18.64806 -18.47544 -18.24814 -17.71815 -17.30015 -16.89422 -16.72527 -16.33579 -16.01945 -15.88478 -15.65113 -15.33104 -14.98680 -14.77713 -14.67453 -14.52417 -14.39799 -14.07327 -13.94803 -13.57659 -13.35281 -13.17510 -13.11168 -13.00249 -12.91292 -12.63331 -12.48812 -12.25238 -11.83394 -11.73852 -11.48743 -11.38404 -11.17068 -11.07512 -10.29718 -10.16236 -10.14317 -9.92498 -9.43668 -8.68063 -8.36155 -6.14157 0.92740 1.29281 1.39565 1.40248 1.47968 1.58690 1.59319 2.25541 2.37917 2.44236 2.73167 2.97849 3.31294 3.36791 3.48439 3.52746 3.75543 3.96534 4.01519 4.09203 4.19709 4.24857 4.26605 4.33837 4.41551 4.48456 4.52724 4.59175 4.63114 4.74340 4.78742 4.85436 4.91762 5.03597 5.09418 5.15558 5.32659 5.38715 5.40859 5.69380 5.84742 5.85477 5.95439 5.99222 6.18776 6.45947 7.05199 7.14703 7.20060 8.73327 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.020801 B = 0.001923 C = 0.001838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.755693 B =14555.301282 C =15231.669826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.013 3.987 3 Si 1.000 3.000 4 H -0.258 1.258 5 H -0.273 1.273 6 H -0.273 1.273 7 C -0.546 4.546 8 H 0.081 0.919 9 S -0.148 6.148 10 C -0.130 4.130 11 C 0.534 3.466 12 O -0.564 6.564 13 N -0.710 5.710 14 C 0.158 3.842 15 C -0.133 4.133 16 C -0.130 4.130 17 C 0.072 3.928 18 N -0.498 5.498 19 C 0.048 3.952 20 H 0.120 0.880 21 C -0.120 4.120 22 C 0.087 3.913 23 N -0.723 5.723 24 C 0.478 3.522 25 O -0.582 6.582 26 C 0.053 3.947 27 C -0.074 4.074 28 H 0.271 0.729 29 H 0.108 0.892 30 H 0.108 0.892 31 H 0.412 0.588 32 H 0.064 0.936 33 H 0.067 0.933 34 H 0.124 0.876 35 H 0.043 0.957 36 H 0.122 0.878 37 H 0.117 0.883 38 H 0.108 0.892 39 H 0.108 0.892 40 H 0.087 0.913 41 H 0.412 0.588 42 H 0.026 0.974 43 H 0.085 0.915 44 H 0.091 0.909 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.632 -31.303 5.392 36.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.192 4.192 3 Si 0.821 3.179 4 H -0.182 1.182 5 H -0.199 1.199 6 H -0.198 1.198 7 C -0.694 4.694 8 H 0.099 0.901 9 S 0.079 5.921 10 C -0.281 4.281 11 C 0.320 3.680 12 O -0.442 6.442 13 N -0.363 5.363 14 C 0.035 3.965 15 C -0.134 4.134 16 C -0.150 4.150 17 C -0.054 4.054 18 N -0.223 5.223 19 C -0.064 4.064 20 H 0.138 0.862 21 C -0.158 4.158 22 C -0.036 4.036 23 N -0.378 5.378 24 C 0.262 3.738 25 O -0.461 6.461 26 C -0.074 4.074 27 C -0.111 4.111 28 H 0.081 0.919 29 H 0.126 0.874 30 H 0.126 0.874 31 H 0.248 0.752 32 H 0.083 0.917 33 H 0.085 0.915 34 H 0.142 0.858 35 H 0.061 0.939 36 H 0.140 0.860 37 H 0.135 0.865 38 H 0.126 0.874 39 H 0.127 0.873 40 H 0.105 0.895 41 H 0.251 0.749 42 H 0.044 0.956 43 H 0.103 0.897 44 H 0.109 0.891 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 15.305 -31.560 4.834 35.407 hybrid contribution 2.932 2.350 0.295 3.769 sum 18.237 -29.210 5.129 34.816 Atomic orbital electron populations 1.70189 1.07918 1.28573 1.48000 1.26138 0.96009 1.03322 0.93752 0.84896 0.78512 0.76316 0.78152 1.18205 1.19854 1.19803 1.23228 0.95304 0.92047 1.58833 0.90062 1.85540 1.10393 0.99126 1.97036 1.23375 1.03618 0.94488 1.06654 1.20053 0.86208 0.86571 0.75131 1.90690 1.17270 1.86059 1.50207 1.45852 1.10109 1.04910 1.75466 1.20335 0.94748 0.79086 1.02313 1.20864 0.97726 0.98532 0.96236 1.22365 0.97594 0.97156 0.97848 1.21371 0.95389 0.96853 0.91827 1.62906 1.31825 1.21569 1.06001 1.22809 0.85679 0.94711 1.03219 0.86230 1.22866 1.04464 0.96978 0.91466 1.22630 0.92565 0.92041 0.96392 1.46466 1.33153 1.47031 1.11129 1.22463 0.86164 0.82233 0.82926 1.90744 1.56805 1.41129 1.57405 1.22222 0.96200 0.93119 0.95908 1.20498 0.95287 1.00739 0.94586 0.91948 0.87376 0.87421 0.75178 0.91736 0.91507 0.85791 0.93875 0.85990 0.86483 0.87353 0.87336 0.89506 0.74885 0.95611 0.89686 0.89055 0.90591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.39 13.22 21.65 0.29 -56.10 16 2 C 0.01 0.72 5.49 84.86 0.47 1.19 16 3 Si 1.00 44.20 29.55 68.60 2.03 46.22 16 4 H -0.26 -10.73 7.11 99.48 0.71 -10.03 16 5 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 6 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 7 C -0.55 -31.67 9.50 67.95 0.65 -31.02 16 8 H 0.08 4.40 7.80 -2.91 -0.02 4.38 16 9 S -0.15 -8.35 20.57 -56.49 -1.16 -9.51 16 10 C -0.13 -5.30 6.16 71.24 0.44 -4.86 16 11 C 0.53 20.22 7.85 87.66 0.69 20.91 16 12 O -0.56 -26.53 15.86 -3.03 -0.05 -26.58 16 13 N -0.71 -18.89 5.55 -466.78 -2.59 -21.48 16 14 C 0.16 3.67 5.72 85.63 0.49 4.16 16 15 C -0.13 -2.31 5.26 -15.40 -0.08 -2.39 16 16 C -0.13 -1.90 9.50 26.69 0.25 -1.65 16 17 C 0.07 0.81 3.99 85.39 0.34 1.15 16 18 N -0.50 -6.24 4.75 -875.35 -4.16 -10.40 16 19 C 0.05 0.49 3.22 44.91 0.14 0.63 16 20 H 0.12 1.22 8.14 -2.38 -0.02 1.20 16 21 C -0.12 -0.25 6.25 31.77 0.20 -0.05 16 22 C 0.09 0.14 6.82 86.95 0.59 0.73 16 23 N -0.72 -6.38 5.84 -459.19 -2.68 -9.06 16 24 C 0.48 7.70 6.14 87.90 0.54 8.24 16 25 O -0.58 -15.47 16.98 -3.04 -0.05 -15.52 16 26 C 0.05 0.89 4.90 86.32 0.42 1.31 16 27 C -0.07 -1.21 6.04 29.81 0.18 -1.03 16 28 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 29 H 0.11 3.99 8.14 -2.40 -0.02 3.97 16 30 H 0.11 3.99 8.14 -2.40 -0.02 3.97 16 31 H 0.41 8.80 8.46 -92.70 -0.78 8.02 16 32 H 0.06 1.64 8.12 -2.39 -0.02 1.62 16 33 H 0.07 1.64 7.85 -2.39 -0.02 1.62 16 34 H 0.12 1.68 7.81 -2.91 -0.02 1.66 16 35 H 0.04 0.58 6.36 -2.39 -0.02 0.56 16 36 H 0.12 0.68 5.68 -2.38 -0.01 0.67 16 37 H 0.12 0.03 7.43 -2.39 -0.02 0.02 16 38 H 0.11 -0.08 8.14 -2.38 -0.02 -0.10 16 39 H 0.11 -0.29 8.14 -2.39 -0.02 -0.31 16 40 H 0.09 0.02 6.27 -2.38 -0.01 0.00 16 41 H 0.41 3.14 8.96 -92.71 -0.83 2.31 16 42 H 0.03 0.55 7.08 -2.39 -0.02 0.54 16 43 H 0.08 1.38 8.06 -2.39 -0.02 1.36 16 44 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 45 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 Total: -1.00 -84.54 375.67 -3.64 -88.18 By element: Atomic # 1 Polarization: 17.52 SS G_CDS: -0.58 Total: 16.93 kcal Atomic # 6 Polarization: -8.00 SS G_CDS: 5.32 Total: -2.68 kcal Atomic # 7 Polarization: -87.90 SS G_CDS: -9.14 Total: -97.04 kcal Atomic # 8 Polarization: -42.00 SS G_CDS: -0.10 Total: -42.10 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.22 kcal Atomic # 16 Polarization: -8.35 SS G_CDS: -1.16 Total: -9.51 kcal Total: -84.54 -3.64 -88.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734620202.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.220 kcal (2) G-P(sol) polarization free energy of solvation -84.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds