Wall clock time and date at job start Sat Apr 11 2020 05:39:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.34657 * 125.79800 * 2 1 4 4 H 0.96994 * 124.85630 * 0.02562 * 3 2 1 5 5 C 1.36453 * 110.29500 * 180.30429 * 3 2 1 6 6 C 1.34489 * 108.85450 * 359.72856 * 5 3 2 7 7 C 1.36762 * 125.80002 * 179.83675 * 2 1 3 8 8 C 1.47264 * 126.94442 * 359.97438 * 7 2 1 9 9 O 1.21623 * 119.99981 * 359.71094 * 8 7 2 10 10 N 1.34775 * 119.99852 * 179.70736 * 8 7 2 11 11 C 1.46507 * 119.99880 * 179.97438 * 10 8 7 12 12 H 1.08995 * 109.47101 * 325.00423 * 11 10 8 13 13 C 1.53004 * 109.46732 * 85.00694 * 11 10 8 14 14 C 1.52999 * 109.47137 * 205.00250 * 11 10 8 15 15 H 1.09004 * 109.47434 * 300.00316 * 14 11 10 16 16 C 1.52997 * 109.47114 * 60.00123 * 14 11 10 17 17 N 1.46498 * 109.46963 * 179.97438 * 14 11 10 18 18 C 1.34777 * 119.99828 * 154.72290 * 17 14 11 19 19 O 1.21283 * 120.00222 * 0.28168 * 18 17 14 20 20 C 1.50703 * 120.00290 * 180.27728 * 18 17 14 21 21 S 1.81000 * 109.47389 * 180.02562 * 20 18 17 22 22 C 1.76198 * 99.99715 * 179.97438 * 21 20 18 23 23 H 1.08001 * 120.00516 * 0.02562 * 22 21 20 24 24 C 1.38803 * 119.99710 * 179.97438 * 22 21 20 25 25 N 1.31634 * 120.00163 * 0.02562 * 24 22 21 26 26 Si 1.86799 * 120.00011 * 179.97438 * 24 22 21 27 27 H 1.48505 * 109.46661 * 60.00586 * 26 24 22 28 28 H 1.48501 * 109.47391 * 180.02562 * 26 24 22 29 29 H 1.48497 * 109.47355 * 300.00441 * 26 24 22 30 30 H 1.09004 * 109.47023 * 270.16674 * 1 2 3 31 31 H 1.08996 * 109.47417 * 30.16201 * 1 2 3 32 32 H 1.08995 * 109.47328 * 150.16482 * 1 2 3 33 33 H 1.07998 * 125.57274 * 179.74902 * 5 3 2 34 34 H 1.08000 * 126.83320 * 179.97438 * 6 5 3 35 35 H 0.97000 * 120.00517 * 0.02562 * 10 8 7 36 36 H 1.08994 * 109.47427 * 59.99463 * 13 11 10 37 37 H 1.08999 * 109.46966 * 180.02562 * 13 11 10 38 38 H 1.09010 * 109.46876 * 299.99572 * 13 11 10 39 39 H 1.08997 * 109.47293 * 179.97438 * 16 14 11 40 40 H 1.09003 * 109.47189 * 300.00067 * 16 14 11 41 41 H 1.09009 * 109.47238 * 59.99946 * 16 14 11 42 42 H 0.97001 * 120.00384 * 335.00737 * 17 14 11 43 43 H 1.08998 * 109.46954 * 300.00581 * 20 18 17 44 44 H 1.09002 * 109.46946 * 59.99717 * 20 18 17 45 45 H 0.96991 * 119.99795 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2947 1.0922 0.0000 4 1 1.9734 2.0074 0.0004 5 6 3.6095 0.7275 -0.0068 6 6 3.6882 -0.6151 -0.0053 7 6 2.3070 -1.1092 0.0032 8 6 1.8702 -2.5156 0.0077 9 8 0.6839 -2.7839 0.0143 10 7 2.7850 -3.5053 0.0045 11 6 2.3504 -4.9044 0.0096 12 1 1.4420 -5.0006 0.6042 13 6 2.0712 -5.3569 -1.4251 14 6 3.4509 -5.7781 0.6148 15 1 4.3594 -5.6820 0.0202 16 6 3.7302 -5.3257 2.0494 17 7 3.0161 -7.1771 0.6204 18 6 3.9306 -8.1670 0.6117 19 8 5.1136 -7.8998 0.6043 20 6 3.4834 -9.6062 0.6111 21 16 4.9338 -10.6888 0.5993 22 6 4.1410 -12.2624 0.6014 23 1 3.0628 -12.3239 0.6081 24 6 4.9023 -13.4230 0.5934 25 7 6.2165 -13.3481 0.5848 26 14 4.0619 -15.0912 0.5964 27 1 3.2051 -15.2159 -0.6101 28 1 5.0895 -16.1633 0.5873 29 1 3.2230 -15.2208 1.8149 30 1 -0.3633 0.0030 1.0277 31 1 -0.3634 0.8885 -0.5163 32 1 -0.3634 -0.8914 -0.5112 33 1 4.4497 1.4060 -0.0122 34 1 4.5890 -1.2109 -0.0098 35 1 3.7311 -3.2914 -0.0004 36 1 2.9796 -5.2607 -2.0198 37 1 1.7475 -6.3977 -1.4214 38 1 1.2871 -4.7344 -1.8563 39 1 4.5139 -5.9484 2.4807 40 1 4.0535 -4.2847 2.0456 41 1 2.8217 -5.4218 2.6441 42 1 2.0700 -7.3909 0.6262 43 1 2.8909 -9.8028 1.5046 44 1 2.8787 -9.7984 -0.2752 45 1 6.7484 -14.1591 0.5796 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734694835.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:35 Heat of formation + Delta-G solvation = -41.280020 kcal Electronic energy + Delta-G solvation = -26146.803285 eV Core-core repulsion = 22290.856334 eV Total energy + Delta-G solvation = -3855.946951 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.61201 -39.92850 -38.98186 -36.63435 -33.98793 -32.41059 -31.97111 -31.81096 -30.79492 -29.86185 -28.44035 -26.72456 -25.46578 -24.24469 -22.90634 -21.28893 -20.69069 -20.41981 -19.71202 -18.08791 -17.86672 -16.66336 -16.57276 -15.71345 -15.56341 -15.40034 -14.96862 -14.78543 -14.59331 -14.22397 -13.98002 -13.82910 -13.71565 -13.46686 -13.41315 -13.16262 -13.07432 -12.91212 -12.66639 -12.40131 -12.36193 -11.94669 -11.93179 -11.72202 -11.44239 -11.02822 -11.02187 -10.81075 -10.73388 -10.02261 -9.80537 -9.41501 -9.34646 -9.17368 -9.04357 -8.86516 -8.55001 -8.22340 -6.48031 -6.19871 -3.90269 1.44343 2.05234 2.62839 2.92904 3.10632 3.22512 3.25194 3.29870 3.35482 3.41202 3.82701 4.22383 4.38243 4.43406 4.60191 4.80601 4.84193 4.87081 5.05639 5.14496 5.15246 5.17631 5.26627 5.35811 5.42824 5.47047 5.58407 5.59700 5.61636 5.71124 5.78338 5.85043 5.91453 5.99799 6.11397 6.16748 6.21840 6.32404 6.37712 6.53762 6.66460 7.01806 7.42472 7.61220 7.71689 8.17918 8.36906 8.62532 9.25442 10.87481 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.034806 B = 0.001783 C = 0.001731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.265597 B =15695.887390 C =16168.929119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.107 3.893 3 N -0.554 5.554 4 H 0.416 0.584 5 C -0.017 4.017 6 C -0.167 4.167 7 C -0.237 4.237 8 C 0.595 3.405 9 O -0.551 6.551 10 N -0.717 5.717 11 C 0.139 3.861 12 H 0.093 0.907 13 C -0.163 4.163 14 C 0.138 3.862 15 H 0.092 0.908 16 C -0.163 4.163 17 N -0.730 5.730 18 C 0.536 3.464 19 O -0.516 6.516 20 C -0.154 4.154 21 S -0.059 6.059 22 C -0.536 4.536 23 H 0.072 0.928 24 C 0.074 3.926 25 N -0.868 5.868 26 Si 0.918 3.082 27 H -0.274 1.274 28 H -0.283 1.283 29 H -0.274 1.274 30 H 0.078 0.922 31 H 0.062 0.938 32 H 0.102 0.898 33 H 0.170 0.830 34 H 0.146 0.854 35 H 0.401 0.599 36 H 0.059 0.941 37 H 0.069 0.931 38 H 0.061 0.939 39 H 0.067 0.933 40 H 0.062 0.938 41 H 0.056 0.944 42 H 0.399 0.601 43 H 0.090 0.910 44 H 0.090 0.910 45 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.905 30.876 -1.277 32.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.012 4.012 3 N -0.150 5.150 4 H 0.252 0.748 5 C -0.144 4.144 6 C -0.191 4.191 7 C -0.247 4.247 8 C 0.384 3.616 9 O -0.430 6.430 10 N -0.368 5.368 11 C 0.034 3.966 12 H 0.111 0.889 13 C -0.221 4.221 14 C 0.032 3.968 15 H 0.110 0.890 16 C -0.221 4.221 17 N -0.385 5.385 18 C 0.322 3.678 19 O -0.390 6.390 20 C -0.304 4.304 21 S 0.167 5.833 22 C -0.684 4.684 23 H 0.090 0.910 24 C -0.136 4.136 25 N -0.503 5.503 26 Si 0.745 3.255 27 H -0.199 1.199 28 H -0.208 1.208 29 H -0.200 1.200 30 H 0.096 0.904 31 H 0.081 0.919 32 H 0.121 0.879 33 H 0.187 0.813 34 H 0.164 0.836 35 H 0.236 0.764 36 H 0.078 0.922 37 H 0.088 0.912 38 H 0.081 0.919 39 H 0.086 0.914 40 H 0.081 0.919 41 H 0.076 0.924 42 H 0.233 0.767 43 H 0.108 0.892 44 H 0.108 0.892 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -8.587 31.136 -1.282 32.324 hybrid contribution -1.808 -0.900 0.028 2.020 sum -10.396 30.236 -1.255 31.998 Atomic orbital electron populations 1.20588 0.86948 1.04256 1.03536 1.20366 0.93763 0.85648 1.01379 1.41623 1.06320 1.08446 1.58569 0.74776 1.21745 0.85651 0.96524 1.10520 1.22069 0.95812 0.93741 1.07510 1.20108 0.93281 0.91997 1.19350 1.17284 0.85208 0.83968 0.75091 1.90733 1.16606 1.84383 1.51296 1.45680 1.09924 1.05231 1.75948 1.21097 0.97863 0.80227 0.97448 0.88929 1.22175 1.02289 1.01872 0.95774 1.21009 0.97493 0.81143 0.97166 0.88997 1.22183 1.02477 1.01340 0.96117 1.45940 1.09949 1.04818 1.77786 1.20287 0.85925 0.86755 0.74858 1.90697 1.16756 1.84076 1.47511 1.23537 1.07124 0.94782 1.04997 1.85373 1.03741 0.97445 1.96720 1.22835 0.95057 0.91535 1.58998 0.90965 1.24987 0.94850 0.99177 0.94543 1.70006 1.04187 1.29297 1.46830 0.86230 0.78928 0.81570 0.78804 1.19942 1.20829 1.19950 0.90383 0.91886 0.87934 0.81313 0.83626 0.76442 0.92220 0.91231 0.91948 0.91429 0.91867 0.92449 0.76689 0.89181 0.89173 0.92149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.65 9.88 36.01 0.36 -0.29 16 2 C 0.11 0.85 7.17 -81.89 -0.59 0.26 16 3 N -0.55 -2.90 5.90 -9.11 -0.05 -2.96 16 4 H 0.42 0.84 8.96 -40.82 -0.37 0.47 16 5 C -0.02 -0.10 11.89 -16.82 -0.20 -0.30 16 6 C -0.17 -1.23 10.56 -37.50 -0.40 -1.62 16 7 C -0.24 -2.27 6.29 -103.35 -0.65 -2.92 16 8 C 0.60 6.66 7.77 -12.59 -0.10 6.56 16 9 O -0.55 -7.58 14.48 5.26 0.08 -7.51 16 10 N -0.72 -6.76 4.38 -54.93 -0.24 -7.00 16 11 C 0.14 1.41 2.21 -67.93 -0.15 1.26 16 12 H 0.09 1.02 7.58 -51.93 -0.39 0.62 16 13 C -0.16 -1.68 9.33 37.16 0.35 -1.33 16 14 C 0.14 1.58 2.21 -67.93 -0.15 1.43 16 15 H 0.09 1.18 7.57 -51.93 -0.39 0.79 16 16 C -0.16 -1.82 9.33 37.16 0.35 -1.47 16 17 N -0.73 -9.50 4.38 -53.81 -0.24 -9.74 16 18 C 0.54 9.71 7.82 -10.98 -0.09 9.63 16 19 O -0.52 -11.34 15.52 5.55 0.09 -11.26 16 20 C -0.15 -3.06 6.16 36.01 0.22 -2.84 16 21 S -0.06 -1.60 20.57 -107.50 -2.21 -3.82 16 22 C -0.54 -15.27 9.50 30.94 0.29 -14.97 16 23 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 24 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 25 N -0.87 -26.18 13.22 55.49 0.73 -25.44 16 26 Si 0.92 21.46 29.55 -169.99 -5.02 16.44 16 27 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 28 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 29 H -0.27 -6.26 7.11 56.52 0.40 -5.85 16 30 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.10 0.91 6.47 -51.93 -0.34 0.58 16 33 H 0.17 0.42 8.06 -52.49 -0.42 0.00 16 34 H 0.15 0.82 7.70 -52.49 -0.40 0.41 16 35 H 0.40 3.09 7.51 -40.82 -0.31 2.79 16 36 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.07 0.70 7.45 -51.93 -0.39 0.31 16 38 H 0.06 0.68 8.14 -51.92 -0.42 0.26 16 39 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.06 0.59 7.44 -51.93 -0.39 0.21 16 41 H 0.06 0.62 8.14 -51.92 -0.42 0.20 16 42 H 0.40 4.19 8.39 -40.82 -0.34 3.85 16 43 H 0.09 1.67 8.14 -51.92 -0.42 1.24 16 44 H 0.09 1.66 8.14 -51.92 -0.42 1.23 16 45 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 393.31 15.07 5.93 5.93 Total: -1.00 -36.97 393.31 -8.45 -45.42 By element: Atomic # 1 Polarization: 11.18 SS G_CDS: -6.66 Total: 4.52 kcal Atomic # 6 Polarization: -3.74 SS G_CDS: -0.85 Total: -4.59 kcal Atomic # 7 Polarization: -45.34 SS G_CDS: 0.20 Total: -45.14 kcal Atomic # 8 Polarization: -18.93 SS G_CDS: 0.16 Total: -18.76 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -2.21 Total: -3.82 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -36.97 -8.45 -45.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734694835.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.142 kcal (2) G-P(sol) polarization free energy of solvation -36.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds