Wall clock time and date at job start Sat Apr 11 2020 05:39:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.34657 * 125.79800 * 2 1 4 4 H 0.96994 * 124.85630 * 0.02562 * 3 2 1 5 5 C 1.36453 * 110.29500 * 180.30429 * 3 2 1 6 6 C 1.34489 * 108.85450 * 359.72856 * 5 3 2 7 7 C 1.36762 * 125.80002 * 179.83675 * 2 1 3 8 8 C 1.47264 * 126.94442 * 359.97438 * 7 2 1 9 9 O 1.21623 * 119.99981 * 359.71094 * 8 7 2 10 10 N 1.34775 * 119.99852 * 179.70736 * 8 7 2 11 11 C 1.46507 * 119.99880 * 179.97438 * 10 8 7 12 12 H 1.08995 * 109.47101 * 325.00423 * 11 10 8 13 13 C 1.53004 * 109.46732 * 85.00694 * 11 10 8 14 14 C 1.52999 * 109.47137 * 205.00250 * 11 10 8 15 15 H 1.09004 * 109.47434 * 300.00316 * 14 11 10 16 16 C 1.52997 * 109.47114 * 60.00123 * 14 11 10 17 17 N 1.46498 * 109.46963 * 179.97438 * 14 11 10 18 18 C 1.34777 * 119.99828 * 154.72290 * 17 14 11 19 19 O 1.21283 * 120.00222 * 0.28168 * 18 17 14 20 20 C 1.50703 * 120.00290 * 180.27728 * 18 17 14 21 21 S 1.81000 * 109.47389 * 180.02562 * 20 18 17 22 22 C 1.76198 * 99.99715 * 179.97438 * 21 20 18 23 23 H 1.08001 * 120.00516 * 0.02562 * 22 21 20 24 24 C 1.38803 * 119.99710 * 179.97438 * 22 21 20 25 25 N 1.31634 * 120.00163 * 0.02562 * 24 22 21 26 26 Si 1.86799 * 120.00011 * 179.97438 * 24 22 21 27 27 H 1.48505 * 109.46661 * 60.00586 * 26 24 22 28 28 H 1.48501 * 109.47391 * 180.02562 * 26 24 22 29 29 H 1.48497 * 109.47355 * 300.00441 * 26 24 22 30 30 H 1.09004 * 109.47023 * 270.16674 * 1 2 3 31 31 H 1.08996 * 109.47417 * 30.16201 * 1 2 3 32 32 H 1.08995 * 109.47328 * 150.16482 * 1 2 3 33 33 H 1.07998 * 125.57274 * 179.74902 * 5 3 2 34 34 H 1.08000 * 126.83320 * 179.97438 * 6 5 3 35 35 H 0.97000 * 120.00517 * 0.02562 * 10 8 7 36 36 H 1.08994 * 109.47427 * 59.99463 * 13 11 10 37 37 H 1.08999 * 109.46966 * 180.02562 * 13 11 10 38 38 H 1.09010 * 109.46876 * 299.99572 * 13 11 10 39 39 H 1.08997 * 109.47293 * 179.97438 * 16 14 11 40 40 H 1.09003 * 109.47189 * 300.00067 * 16 14 11 41 41 H 1.09009 * 109.47238 * 59.99946 * 16 14 11 42 42 H 0.97001 * 120.00384 * 335.00737 * 17 14 11 43 43 H 1.08998 * 109.46954 * 300.00581 * 20 18 17 44 44 H 1.09002 * 109.46946 * 59.99717 * 20 18 17 45 45 H 0.96991 * 119.99795 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2947 1.0922 0.0000 4 1 1.9734 2.0074 0.0004 5 6 3.6095 0.7275 -0.0068 6 6 3.6882 -0.6151 -0.0053 7 6 2.3070 -1.1092 0.0032 8 6 1.8702 -2.5156 0.0077 9 8 0.6839 -2.7839 0.0143 10 7 2.7850 -3.5053 0.0045 11 6 2.3504 -4.9044 0.0096 12 1 1.4420 -5.0006 0.6042 13 6 2.0712 -5.3569 -1.4251 14 6 3.4509 -5.7781 0.6148 15 1 4.3594 -5.6820 0.0202 16 6 3.7302 -5.3257 2.0494 17 7 3.0161 -7.1771 0.6204 18 6 3.9306 -8.1670 0.6117 19 8 5.1136 -7.8998 0.6043 20 6 3.4834 -9.6062 0.6111 21 16 4.9338 -10.6888 0.5993 22 6 4.1410 -12.2624 0.6014 23 1 3.0628 -12.3239 0.6081 24 6 4.9023 -13.4230 0.5934 25 7 6.2165 -13.3481 0.5848 26 14 4.0619 -15.0912 0.5964 27 1 3.2051 -15.2159 -0.6101 28 1 5.0895 -16.1633 0.5873 29 1 3.2230 -15.2208 1.8149 30 1 -0.3633 0.0030 1.0277 31 1 -0.3634 0.8885 -0.5163 32 1 -0.3634 -0.8914 -0.5112 33 1 4.4497 1.4060 -0.0122 34 1 4.5890 -1.2109 -0.0098 35 1 3.7311 -3.2914 -0.0004 36 1 2.9796 -5.2607 -2.0198 37 1 1.7475 -6.3977 -1.4214 38 1 1.2871 -4.7344 -1.8563 39 1 4.5139 -5.9484 2.4807 40 1 4.0535 -4.2847 2.0456 41 1 2.8217 -5.4218 2.6441 42 1 2.0700 -7.3909 0.6262 43 1 2.8909 -9.8028 1.5046 44 1 2.8787 -9.7984 -0.2752 45 1 6.7484 -14.1591 0.5796 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734694835.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:34 Heat of formation + Delta-G solvation = -67.969499 kcal Electronic energy + Delta-G solvation = -26147.960627 eV Core-core repulsion = 22290.856334 eV Total energy + Delta-G solvation = -3857.104293 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.14442 -41.03794 -40.07654 -37.72927 -35.07951 -34.56487 -32.77135 -32.40711 -31.80555 -30.68085 -29.84189 -27.63749 -27.26398 -25.11314 -23.77789 -22.01767 -21.73608 -21.33429 -20.55039 -19.81609 -18.59637 -18.02556 -17.50526 -16.86282 -16.76339 -16.57903 -16.41380 -16.13204 -15.74325 -15.34653 -14.92520 -14.79552 -14.69809 -14.45416 -14.38322 -14.28248 -13.96806 -13.74918 -13.57932 -13.39470 -13.24158 -13.19722 -13.13925 -12.85896 -12.69298 -12.60685 -12.46861 -12.45035 -11.79358 -11.68704 -11.11396 -10.99990 -10.81738 -10.30161 -10.25811 -10.02586 -9.70785 -9.08377 -8.63901 -8.32959 -6.10382 0.78077 1.27142 1.44780 1.46701 1.56245 1.57697 1.63746 1.96857 2.28855 2.36299 2.60577 2.70602 3.01031 3.34041 3.45256 3.91934 3.94737 3.99474 4.06606 4.15273 4.32308 4.33111 4.35264 4.43927 4.50624 4.54726 4.69316 4.73136 4.74619 4.75638 4.87838 4.98308 5.01072 5.10375 5.21882 5.26523 5.30666 5.42684 5.43620 5.58575 5.83359 6.01334 6.21358 6.49225 6.61965 6.72783 7.08426 7.25243 7.37697 8.75877 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.034806 B = 0.001783 C = 0.001731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.265597 B =15695.887390 C =16168.929119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.098 3.902 3 N -0.540 5.540 4 H 0.432 0.568 5 C -0.006 4.006 6 C -0.187 4.187 7 C -0.271 4.271 8 C 0.591 3.409 9 O -0.584 6.584 10 N -0.709 5.709 11 C 0.151 3.849 12 H 0.090 0.910 13 C -0.159 4.159 14 C 0.143 3.857 15 H 0.082 0.918 16 C -0.157 4.157 17 N -0.706 5.706 18 C 0.540 3.460 19 O -0.559 6.559 20 C -0.131 4.131 21 S -0.147 6.147 22 C -0.548 4.548 23 H 0.082 0.918 24 C 0.014 3.986 25 N -0.911 5.911 26 Si 0.997 3.003 27 H -0.262 1.262 28 H -0.279 1.279 29 H -0.263 1.263 30 H 0.079 0.921 31 H 0.088 0.912 32 H 0.077 0.923 33 H 0.204 0.796 34 H 0.157 0.843 35 H 0.410 0.590 36 H 0.057 0.943 37 H 0.073 0.927 38 H 0.055 0.945 39 H 0.043 0.957 40 H 0.082 0.918 41 H 0.063 0.937 42 H 0.415 0.585 43 H 0.109 0.891 44 H 0.110 0.890 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.401 32.381 -1.257 34.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.022 4.022 3 N -0.137 5.137 4 H 0.272 0.728 5 C -0.133 4.133 6 C -0.211 4.211 7 C -0.281 4.281 8 C 0.382 3.618 9 O -0.466 6.466 10 N -0.360 5.360 11 C 0.045 3.955 12 H 0.108 0.892 13 C -0.217 4.217 14 C 0.037 3.963 15 H 0.100 0.900 16 C -0.215 4.215 17 N -0.360 5.360 18 C 0.326 3.674 19 O -0.437 6.437 20 C -0.283 4.283 21 S 0.080 5.920 22 C -0.696 4.696 23 H 0.100 0.900 24 C -0.191 4.191 25 N -0.547 5.547 26 Si 0.819 3.181 27 H -0.187 1.187 28 H -0.204 1.204 29 H -0.187 1.187 30 H 0.098 0.902 31 H 0.107 0.893 32 H 0.096 0.904 33 H 0.220 0.780 34 H 0.175 0.825 35 H 0.246 0.754 36 H 0.076 0.924 37 H 0.092 0.908 38 H 0.074 0.926 39 H 0.062 0.938 40 H 0.101 0.899 41 H 0.083 0.917 42 H 0.252 0.748 43 H 0.127 0.873 44 H 0.128 0.872 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -10.114 32.700 -1.261 34.251 hybrid contribution -1.381 -1.178 0.017 1.816 sum -11.495 31.521 -1.245 33.575 Atomic orbital electron populations 1.20532 0.86531 1.04276 1.03646 1.20527 0.94332 0.86189 1.01147 1.41644 1.06092 1.08766 1.57215 0.72804 1.22294 0.86376 0.96479 1.08177 1.22309 0.95281 0.94849 1.08639 1.20213 0.94947 0.91437 1.21540 1.17623 0.84845 0.84915 0.74444 1.90709 1.17901 1.84967 1.53022 1.45584 1.10318 1.04623 1.75497 1.20896 0.96953 0.80452 0.97182 0.89220 1.22140 1.01960 1.01981 0.95659 1.21048 0.97543 0.80086 0.97577 0.90035 1.22122 1.01985 1.01997 0.95426 1.45669 1.10068 1.04677 1.75629 1.19964 0.85766 0.86822 0.74824 1.90690 1.18618 1.84473 1.49928 1.23385 1.03753 0.94290 1.06825 1.85527 1.09555 0.99871 1.97040 1.23186 0.95558 0.91946 1.58879 0.89965 1.26105 0.95489 1.03711 0.93780 1.70172 1.06030 1.30515 1.47980 0.85028 0.77859 0.75805 0.79455 1.18708 1.20393 1.18745 0.90209 0.89290 0.90427 0.77971 0.82536 0.75382 0.92372 0.90785 0.92619 0.93812 0.89948 0.91745 0.74781 0.87307 0.87165 0.92015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.18 9.88 71.24 0.70 -0.48 16 2 C 0.10 1.44 7.17 41.78 0.30 1.74 16 3 N -0.54 -4.34 5.90 -182.72 -1.08 -5.42 16 4 H 0.43 0.47 8.96 -92.71 -0.83 -0.36 16 5 C -0.01 -0.05 11.89 83.12 0.99 0.94 16 6 C -0.19 -2.44 10.56 23.62 0.25 -2.19 16 7 C -0.27 -4.98 6.29 -19.04 -0.12 -5.10 16 8 C 0.59 13.13 7.77 86.62 0.67 13.80 16 9 O -0.58 -16.30 14.48 -4.10 -0.06 -16.36 16 10 N -0.71 -12.93 4.38 -445.94 -1.95 -14.89 16 11 C 0.15 2.93 2.21 44.99 0.10 3.03 16 12 H 0.09 1.87 7.58 -2.39 -0.02 1.85 16 13 C -0.16 -3.16 9.33 71.98 0.67 -2.49 16 14 C 0.14 3.16 2.21 44.99 0.10 3.26 16 15 H 0.08 2.06 7.57 -2.39 -0.02 2.04 16 16 C -0.16 -3.36 9.33 71.98 0.67 -2.69 16 17 N -0.71 -17.50 4.38 -442.53 -1.94 -19.44 16 18 C 0.54 19.38 7.82 87.66 0.69 20.06 16 19 O -0.56 -25.02 15.52 -3.04 -0.05 -25.07 16 20 C -0.13 -5.14 6.16 71.24 0.44 -4.70 16 21 S -0.15 -8.12 20.57 -56.49 -1.16 -9.28 16 22 C -0.55 -31.29 9.50 67.96 0.65 -30.65 16 23 H 0.08 4.35 7.80 -2.91 -0.02 4.33 16 24 C 0.01 0.80 5.49 84.86 0.47 1.26 16 25 N -0.91 -55.96 13.22 21.65 0.29 -55.68 16 26 Si 1.00 43.72 29.55 68.60 2.03 45.75 16 27 H -0.26 -10.93 7.11 99.48 0.71 -10.23 16 28 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 29 H -0.26 -10.96 7.11 99.48 0.71 -10.25 16 30 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.08 1.42 6.47 -2.39 -0.02 1.40 16 33 H 0.20 0.21 8.06 -2.91 -0.02 0.18 16 34 H 0.16 1.51 7.70 -2.91 -0.02 1.49 16 35 H 0.41 5.98 7.51 -92.71 -0.70 5.29 16 36 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.07 1.38 7.45 -2.39 -0.02 1.37 16 38 H 0.05 1.20 8.14 -2.38 -0.02 1.18 16 39 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.08 1.44 7.44 -2.39 -0.02 1.43 16 41 H 0.06 1.29 8.14 -2.38 -0.02 1.28 16 42 H 0.42 7.83 8.39 -92.71 -0.78 7.06 16 43 H 0.11 3.86 8.14 -2.40 -0.02 3.84 16 44 H 0.11 3.88 8.14 -2.39 -0.02 3.86 16 45 H 0.27 15.49 8.31 -92.72 -0.77 14.72 16 Total: -1.00 -82.85 393.31 1.38 -81.48 By element: Atomic # 1 Polarization: 24.37 SS G_CDS: -1.27 Total: 23.11 kcal Atomic # 6 Polarization: -10.77 SS G_CDS: 6.57 Total: -4.20 kcal Atomic # 7 Polarization: -90.74 SS G_CDS: -4.69 Total: -95.42 kcal Atomic # 8 Polarization: -41.32 SS G_CDS: -0.11 Total: -41.42 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.75 kcal Atomic # 16 Polarization: -8.12 SS G_CDS: -1.16 Total: -9.28 kcal Total: -82.85 1.38 -81.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734694835.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.507 kcal (2) G-P(sol) polarization free energy of solvation -82.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds