Wall clock time and date at job start Sat Apr 11 2020 05:40:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.33391 * 125.20167 * 2 1 4 4 C 1.38429 * 114.91679 * 180.02562 * 3 2 1 5 5 C 1.33390 * 114.92432 * 0.02562 * 4 3 2 6 6 C 1.50698 * 125.20234 * 179.97438 * 5 4 3 7 7 C 1.50694 * 109.47166 * 89.99648 * 6 5 4 8 8 O 1.21283 * 120.00363 * 359.97438 * 7 6 5 9 9 N 1.34784 * 119.99988 * 179.97438 * 7 6 5 10 10 C 1.46494 * 119.99635 * 0.02562 * 9 7 6 11 11 C 1.46493 * 119.99864 * 179.72721 * 9 7 6 12 12 C 1.53000 * 109.47637 * 90.00039 * 11 9 7 13 13 N 1.46896 * 109.47529 * 179.97438 * 12 11 9 14 14 C 1.46901 * 110.99867 * 179.97438 * 13 12 11 15 15 C 1.50702 * 109.46796 * 179.97438 * 14 13 12 16 16 O 1.21294 * 119.99973 * 0.02562 * 15 14 13 17 17 N 1.34774 * 120.00232 * 179.97438 * 15 14 13 18 18 C 1.37094 * 120.00613 * 180.02562 * 17 15 14 19 19 H 1.08003 * 119.99517 * 0.02562 * 18 17 15 20 20 C 1.38952 * 120.00263 * 180.02562 * 18 17 15 21 21 N 1.31412 * 119.99708 * 179.97438 * 20 18 17 22 22 Si 1.86796 * 119.99702 * 359.97438 * 20 18 17 23 23 H 1.48507 * 109.47143 * 90.00625 * 22 20 18 24 24 H 1.48509 * 109.46709 * 209.99979 * 22 20 18 25 25 H 1.48487 * 109.47431 * 329.99973 * 22 20 18 26 26 S 1.75880 * 109.59089 * 0.23691 * 5 4 3 27 27 H 1.09006 * 109.47085 * 89.99899 * 1 2 3 28 28 H 1.09004 * 109.47629 * 209.99967 * 1 2 3 29 29 H 1.09004 * 109.47354 * 330.00168 * 1 2 3 30 30 H 1.07993 * 122.54469 * 0.02562 * 3 2 1 31 31 H 1.08002 * 122.53446 * 180.02562 * 4 3 2 32 32 H 1.08998 * 109.46890 * 329.99638 * 6 5 4 33 33 H 1.09002 * 109.46875 * 209.99440 * 6 5 4 34 34 H 1.08995 * 109.47693 * 90.00207 * 10 9 7 35 35 H 1.09003 * 109.47006 * 210.00121 * 10 9 7 36 36 H 1.09004 * 109.47665 * 329.99813 * 10 9 7 37 37 H 1.09002 * 109.47192 * 209.99937 * 11 9 7 38 38 H 1.08996 * 109.47342 * 329.99648 * 11 9 7 39 39 H 1.09002 * 109.46747 * 300.00171 * 12 11 9 40 40 H 1.08996 * 109.47074 * 59.99445 * 12 11 9 41 41 H 1.00899 * 110.99990 * 56.04003 * 13 12 11 42 42 H 1.08989 * 109.47092 * 299.99752 * 14 13 12 43 43 H 1.08996 * 109.47337 * 60.00512 * 14 13 12 44 44 H 0.97007 * 119.99834 * 0.02562 * 17 15 14 45 45 H 0.97007 * 119.99631 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2759 1.0900 0.0000 4 6 3.6379 0.8428 -0.0006 5 6 3.9751 -0.4478 -0.0016 6 6 5.3860 -0.9771 -0.0029 7 6 5.8574 -1.1543 1.4174 8 8 5.1204 -0.8775 2.3400 9 7 7.0981 -1.6203 1.6625 10 6 7.9885 -1.9541 0.5482 11 6 7.5584 -1.7869 3.0433 12 6 7.2104 -3.1948 3.5307 13 7 7.6725 -3.3620 4.9150 14 6 7.3541 -4.7051 5.4177 15 6 7.8428 -4.8391 6.8369 16 8 8.4010 -3.9073 7.3767 17 7 7.6588 -5.9940 7.5068 18 6 8.1029 -6.1159 8.7981 19 1 8.5999 -5.2861 9.2787 20 6 7.9135 -7.3068 9.4885 21 7 8.3397 -7.4236 10.7261 22 14 7.0533 -8.7415 8.6574 23 1 8.0588 -9.5898 7.9683 24 1 6.3402 -9.5500 9.6789 25 1 6.0770 -8.2255 7.6646 26 16 2.5209 -1.4371 -0.0087 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3634 -0.8900 0.5138 29 1 -0.3634 0.8900 0.5138 30 1 1.8669 2.0895 0.0004 31 1 4.3720 1.6350 -0.0002 32 1 6.0384 -0.2711 -0.5168 33 1 5.4132 -1.9377 -0.5172 34 1 8.5707 -1.0749 0.2723 35 1 8.6624 -2.7562 0.8492 36 1 7.3951 -2.2796 -0.3063 37 1 8.6383 -1.6443 3.0860 38 1 7.0693 -1.0504 3.6807 39 1 6.1306 -3.3374 3.4880 40 1 7.6996 -3.9312 2.8932 41 1 7.2832 -2.6500 5.5147 42 1 6.2753 -4.8576 5.3886 43 1 7.8437 -5.4523 4.7932 44 1 7.2120 -6.7392 7.0753 45 1 8.2072 -8.2549 11.2082 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753265568.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:00 Heat of formation + Delta-G solvation = -30.144547 kcal Electronic energy + Delta-G solvation = -25664.866198 eV Core-core repulsion = 21809.402117 eV Total energy + Delta-G solvation = -3855.464080 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.28978 -38.48340 -38.18135 -36.44637 -35.06606 -33.87884 -33.42641 -31.65588 -30.79451 -29.42831 -27.16943 -26.33804 -25.15902 -23.75005 -23.07273 -22.14412 -19.87297 -19.33543 -18.95171 -18.31451 -17.47497 -17.25974 -16.51649 -16.17864 -15.64290 -15.57628 -15.40843 -14.88467 -14.38920 -14.09487 -13.98098 -13.93131 -13.60488 -13.50552 -13.31713 -13.07575 -13.00894 -12.96110 -12.75575 -12.40764 -12.33804 -12.23703 -12.07076 -11.89092 -11.75261 -11.62595 -11.21107 -11.05764 -10.98505 -10.58107 -10.12455 -9.95993 -9.55648 -9.01664 -8.73896 -8.68349 -8.56659 -8.18886 -8.14089 -6.29424 -3.80718 0.67758 1.32218 1.71458 2.33560 2.40292 2.74213 3.04258 3.08143 3.16170 3.75985 4.11304 4.16757 4.21549 4.35325 4.53892 4.62995 4.75599 4.87451 4.89932 4.93196 4.96319 5.03991 5.13844 5.16833 5.22815 5.25469 5.30540 5.36329 5.45303 5.55024 5.62776 5.74724 5.82165 5.86536 5.86993 5.94919 5.97977 6.20132 6.24163 7.04343 7.06655 7.55714 7.60061 7.89366 8.16252 8.61570 8.96651 9.44169 9.84500 10.83706 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.015116 B = 0.001893 C = 0.001768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1851.940509 B =14787.418620 C =15835.438912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.179 4.179 3 C -0.140 4.140 4 C -0.121 4.121 5 C -0.165 4.165 6 C -0.067 4.067 7 C 0.511 3.489 8 O -0.521 6.521 9 N -0.616 5.616 10 C 0.075 3.925 11 C 0.117 3.883 12 C 0.046 3.954 13 N -0.666 5.666 14 C 0.050 3.950 15 C 0.451 3.549 16 O -0.564 6.564 17 N -0.591 5.591 18 C -0.304 4.304 19 H 0.120 0.880 20 C 0.041 3.959 21 N -0.881 5.881 22 Si 0.880 3.120 23 H -0.271 1.271 24 H -0.277 1.277 25 H -0.270 1.270 26 S 0.108 5.892 27 H 0.074 0.926 28 H 0.068 0.932 29 H 0.076 0.924 30 H 0.138 0.862 31 H 0.137 0.863 32 H 0.112 0.888 33 H 0.103 0.897 34 H 0.060 0.940 35 H 0.078 0.922 36 H 0.071 0.929 37 H 0.090 0.910 38 H 0.085 0.915 39 H 0.031 0.969 40 H 0.070 0.930 41 H 0.353 0.647 42 H 0.045 0.955 43 H 0.087 0.913 44 H 0.370 0.630 45 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.643 12.553 -30.962 35.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.296 4.296 3 C -0.170 4.170 4 C -0.152 4.152 5 C -0.282 4.282 6 C -0.109 4.109 7 C 0.297 3.703 8 O -0.396 6.396 9 N -0.351 5.351 10 C -0.069 4.069 11 C -0.006 4.006 12 C -0.085 4.085 13 N -0.299 5.299 14 C -0.083 4.083 15 C 0.236 3.764 16 O -0.446 6.446 17 N -0.230 5.230 18 C -0.433 4.433 19 H 0.137 0.863 20 C -0.162 4.162 21 N -0.521 5.521 22 Si 0.707 3.293 23 H -0.196 1.196 24 H -0.202 1.202 25 H -0.195 1.195 26 S 0.373 5.627 27 H 0.092 0.908 28 H 0.087 0.913 29 H 0.095 0.905 30 H 0.156 0.844 31 H 0.154 0.846 32 H 0.130 0.870 33 H 0.121 0.879 34 H 0.078 0.922 35 H 0.096 0.904 36 H 0.090 0.910 37 H 0.108 0.892 38 H 0.103 0.897 39 H 0.049 0.951 40 H 0.089 0.911 41 H 0.172 0.828 42 H 0.063 0.937 43 H 0.105 0.895 44 H 0.203 0.797 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -10.276 11.479 -30.078 33.794 hybrid contribution -1.188 0.180 -0.367 1.256 sum -11.463 11.659 -30.445 34.558 Atomic orbital electron populations 1.20341 0.87850 1.03312 1.02637 1.24482 0.99959 0.95726 1.09479 1.20013 0.92800 0.99203 1.04978 1.19992 0.96323 0.95665 1.03174 1.23709 0.97145 0.96670 1.10714 1.20177 0.91910 1.03473 0.95340 1.20535 0.81331 0.77179 0.91225 1.90761 1.53729 1.49128 1.45990 1.47833 1.14223 1.65544 1.07505 1.21878 0.94466 1.01403 0.89119 1.21417 1.00712 0.97179 0.81249 1.22256 0.98030 0.97176 0.91000 1.60023 1.63901 1.04072 1.01946 1.21687 0.98681 0.92032 0.95920 1.19693 0.85248 0.84065 0.87379 1.90565 1.45583 1.39053 1.69365 1.42202 1.53844 1.12850 1.14139 1.19438 1.35309 1.01714 0.86857 0.86260 1.25043 0.97782 0.97714 0.95684 1.69628 1.45816 1.27058 1.09647 0.86664 0.80016 0.83031 0.79637 1.19602 1.20182 1.19536 1.84200 0.96256 1.09328 1.72936 0.90775 0.91266 0.90478 0.84436 0.84571 0.87030 0.87867 0.92188 0.90367 0.91048 0.89199 0.89683 0.95114 0.91133 0.82785 0.93705 0.89502 0.79693 0.91634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.52 10.38 36.00 0.37 -0.14 16 2 C -0.18 -1.59 6.51 -36.00 -0.23 -1.83 16 3 C -0.14 -1.24 10.05 -41.21 -0.41 -1.65 16 4 C -0.12 -1.12 10.05 -41.21 -0.41 -1.53 16 5 C -0.16 -1.56 5.00 -36.00 -0.18 -1.74 16 6 C -0.07 -0.49 4.75 -29.04 -0.14 -0.63 16 7 C 0.51 5.50 7.67 -10.98 -0.08 5.41 16 8 O -0.52 -7.98 15.62 5.56 0.09 -7.90 16 9 N -0.62 -5.60 2.87 -181.58 -0.52 -6.12 16 10 C 0.07 0.37 10.24 59.84 0.61 0.99 16 11 C 0.12 1.30 5.67 -4.05 -0.02 1.28 16 12 C 0.05 0.58 6.01 -3.83 -0.02 0.56 16 13 N -0.67 -10.77 6.13 -115.06 -0.70 -11.47 16 14 C 0.05 0.86 6.17 -4.97 -0.03 0.83 16 15 C 0.45 10.52 7.82 -10.99 -0.09 10.43 16 16 O -0.56 -15.48 15.78 5.55 0.09 -15.40 16 17 N -0.59 -14.40 5.09 -10.96 -0.06 -14.46 16 18 C -0.30 -8.77 10.16 -14.93 -0.15 -8.92 16 19 H 0.12 3.92 7.39 -52.48 -0.39 3.53 16 20 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 21 N -0.88 -26.05 13.96 55.50 0.77 -25.28 16 22 Si 0.88 19.66 27.74 -169.99 -4.71 14.94 16 23 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 24 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 25 H -0.27 -5.52 6.52 56.52 0.37 -5.15 16 26 S 0.11 1.04 23.31 -107.50 -2.51 -1.47 16 27 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.14 0.94 8.06 -52.49 -0.42 0.52 16 31 H 0.14 1.03 8.06 -52.49 -0.42 0.61 16 32 H 0.11 0.52 8.11 -51.93 -0.42 0.10 16 33 H 0.10 0.55 7.40 -51.93 -0.38 0.17 16 34 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 35 H 0.08 0.37 8.07 -51.93 -0.42 -0.05 16 36 H 0.07 0.22 6.44 -51.93 -0.33 -0.11 16 37 H 0.09 0.91 8.07 -51.93 -0.42 0.49 16 38 H 0.08 1.10 7.42 -51.93 -0.39 0.72 16 39 H 0.03 0.43 8.14 -51.93 -0.42 0.00 16 40 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.35 6.05 8.43 -39.29 -0.33 5.72 16 42 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 44 H 0.37 7.93 5.76 -40.82 -0.24 7.70 16 45 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 393.85 15.07 5.94 5.94 Total: -1.00 -36.55 393.85 -9.22 -45.77 By element: Atomic # 1 Polarization: 18.07 SS G_CDS: -6.71 Total: 11.35 kcal Atomic # 6 Polarization: 4.98 SS G_CDS: -0.89 Total: 4.09 kcal Atomic # 7 Polarization: -56.83 SS G_CDS: -0.51 Total: -57.33 kcal Atomic # 8 Polarization: -23.47 SS G_CDS: 0.17 Total: -23.29 kcal Atomic # 14 Polarization: 19.66 SS G_CDS: -4.71 Total: 14.94 kcal Atomic # 16 Polarization: 1.04 SS G_CDS: -2.51 Total: -1.47 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -36.55 -9.22 -45.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753265568.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.629 kcal (2) G-P(sol) polarization free energy of solvation -36.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds