Wall clock time and date at job start Sat Apr 11 2020 05:39:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.33391 * 125.20167 * 2 1 4 4 C 1.38429 * 114.91679 * 180.02562 * 3 2 1 5 5 C 1.33390 * 114.92432 * 0.02562 * 4 3 2 6 6 C 1.50698 * 125.20234 * 179.97438 * 5 4 3 7 7 C 1.50694 * 109.47166 * 89.99648 * 6 5 4 8 8 O 1.21283 * 120.00363 * 359.97438 * 7 6 5 9 9 N 1.34784 * 119.99988 * 179.97438 * 7 6 5 10 10 C 1.46494 * 119.99635 * 0.02562 * 9 7 6 11 11 C 1.46493 * 119.99864 * 179.72721 * 9 7 6 12 12 C 1.53000 * 109.47637 * 90.00039 * 11 9 7 13 13 N 1.46896 * 109.47529 * 179.97438 * 12 11 9 14 14 C 1.46901 * 110.99867 * 179.97438 * 13 12 11 15 15 C 1.50702 * 109.46796 * 179.97438 * 14 13 12 16 16 O 1.21294 * 119.99973 * 0.02562 * 15 14 13 17 17 N 1.34774 * 120.00232 * 179.97438 * 15 14 13 18 18 C 1.37094 * 120.00613 * 180.02562 * 17 15 14 19 19 H 1.08003 * 119.99517 * 0.02562 * 18 17 15 20 20 C 1.38952 * 120.00263 * 180.02562 * 18 17 15 21 21 N 1.31412 * 119.99708 * 179.97438 * 20 18 17 22 22 Si 1.86796 * 119.99702 * 359.97438 * 20 18 17 23 23 H 1.48507 * 109.47143 * 90.00625 * 22 20 18 24 24 H 1.48509 * 109.46709 * 209.99979 * 22 20 18 25 25 H 1.48487 * 109.47431 * 329.99973 * 22 20 18 26 26 S 1.75880 * 109.59089 * 0.23691 * 5 4 3 27 27 H 1.09006 * 109.47085 * 89.99899 * 1 2 3 28 28 H 1.09004 * 109.47629 * 209.99967 * 1 2 3 29 29 H 1.09004 * 109.47354 * 330.00168 * 1 2 3 30 30 H 1.07993 * 122.54469 * 0.02562 * 3 2 1 31 31 H 1.08002 * 122.53446 * 180.02562 * 4 3 2 32 32 H 1.08998 * 109.46890 * 329.99638 * 6 5 4 33 33 H 1.09002 * 109.46875 * 209.99440 * 6 5 4 34 34 H 1.08995 * 109.47693 * 90.00207 * 10 9 7 35 35 H 1.09003 * 109.47006 * 210.00121 * 10 9 7 36 36 H 1.09004 * 109.47665 * 329.99813 * 10 9 7 37 37 H 1.09002 * 109.47192 * 209.99937 * 11 9 7 38 38 H 1.08996 * 109.47342 * 329.99648 * 11 9 7 39 39 H 1.09002 * 109.46747 * 300.00171 * 12 11 9 40 40 H 1.08996 * 109.47074 * 59.99445 * 12 11 9 41 41 H 1.00899 * 110.99990 * 56.04003 * 13 12 11 42 42 H 1.08989 * 109.47092 * 299.99752 * 14 13 12 43 43 H 1.08996 * 109.47337 * 60.00512 * 14 13 12 44 44 H 0.97007 * 119.99834 * 0.02562 * 17 15 14 45 45 H 0.97007 * 119.99631 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2759 1.0900 0.0000 4 6 3.6379 0.8428 -0.0006 5 6 3.9751 -0.4478 -0.0016 6 6 5.3860 -0.9771 -0.0029 7 6 5.8574 -1.1543 1.4174 8 8 5.1204 -0.8775 2.3400 9 7 7.0981 -1.6203 1.6625 10 6 7.9885 -1.9541 0.5482 11 6 7.5584 -1.7869 3.0433 12 6 7.2104 -3.1948 3.5307 13 7 7.6725 -3.3620 4.9150 14 6 7.3541 -4.7051 5.4177 15 6 7.8428 -4.8391 6.8369 16 8 8.4010 -3.9073 7.3767 17 7 7.6588 -5.9940 7.5068 18 6 8.1029 -6.1159 8.7981 19 1 8.5999 -5.2861 9.2787 20 6 7.9135 -7.3068 9.4885 21 7 8.3397 -7.4236 10.7261 22 14 7.0533 -8.7415 8.6574 23 1 8.0588 -9.5898 7.9683 24 1 6.3402 -9.5500 9.6789 25 1 6.0770 -8.2255 7.6646 26 16 2.5209 -1.4371 -0.0087 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3634 -0.8900 0.5138 29 1 -0.3634 0.8900 0.5138 30 1 1.8669 2.0895 0.0004 31 1 4.3720 1.6350 -0.0002 32 1 6.0384 -0.2711 -0.5168 33 1 5.4132 -1.9377 -0.5172 34 1 8.5707 -1.0749 0.2723 35 1 8.6624 -2.7562 0.8492 36 1 7.3951 -2.2796 -0.3063 37 1 8.6383 -1.6443 3.0860 38 1 7.0693 -1.0504 3.6807 39 1 6.1306 -3.3374 3.4880 40 1 7.6996 -3.9312 2.8932 41 1 7.2832 -2.6500 5.5147 42 1 6.2753 -4.8576 5.3886 43 1 7.8437 -5.4523 4.7932 44 1 7.2120 -6.7392 7.0753 45 1 8.2072 -8.2549 11.2082 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753265568.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:59 Heat of formation + Delta-G solvation = -57.478058 kcal Electronic energy + Delta-G solvation = -25666.051468 eV Core-core repulsion = 21809.402117 eV Total energy + Delta-G solvation = -3856.649350 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.07618 -40.32485 -38.84324 -37.50336 -36.26496 -35.76337 -34.07698 -33.76946 -31.62071 -30.29045 -28.18450 -27.32896 -26.18132 -25.15575 -23.81842 -23.12006 -21.35831 -20.62338 -20.20105 -19.58564 -18.22849 -17.93943 -17.87796 -17.16633 -17.14829 -16.68336 -16.41469 -16.09499 -15.63432 -15.43643 -15.02605 -14.90563 -14.74380 -14.40152 -14.27780 -14.14168 -14.00773 -13.85925 -13.67539 -13.57300 -13.44617 -13.13329 -12.96332 -12.83787 -12.80003 -12.58319 -12.43272 -12.31505 -12.08682 -11.99482 -11.65029 -11.53524 -10.96634 -10.50741 -10.27229 -9.72704 -9.46622 -9.39149 -9.36085 -8.43063 -6.04264 0.02199 0.68219 1.05933 1.29230 1.34292 1.43390 1.57278 1.73016 1.91550 2.03954 2.21617 2.75006 3.12584 3.40346 3.57494 3.76040 3.98799 3.99419 4.10099 4.14165 4.17212 4.36978 4.38575 4.38983 4.46864 4.50738 4.53434 4.67267 4.71379 4.73589 4.78630 4.81282 4.95506 5.01094 5.07710 5.25197 5.34040 5.43412 5.51466 5.62460 5.84386 5.96966 6.22569 6.36183 6.56977 6.85221 7.14070 7.36474 7.92552 8.74501 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.015116 B = 0.001893 C = 0.001768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1851.940509 B =14787.418620 C =15835.438912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.186 4.186 3 C -0.153 4.153 4 C -0.133 4.133 5 C -0.175 4.175 6 C -0.061 4.061 7 C 0.505 3.495 8 O -0.577 6.577 9 N -0.612 5.612 10 C 0.066 3.934 11 C 0.122 3.878 12 C 0.056 3.944 13 N -0.679 5.679 14 C 0.063 3.937 15 C 0.448 3.552 16 O -0.613 6.613 17 N -0.589 5.589 18 C -0.330 4.330 19 H 0.055 0.945 20 C -0.016 4.016 21 N -0.933 5.933 22 Si 0.966 3.034 23 H -0.254 1.254 24 H -0.274 1.274 25 H -0.234 1.234 26 S 0.077 5.923 27 H 0.089 0.911 28 H 0.068 0.932 29 H 0.087 0.913 30 H 0.155 0.845 31 H 0.149 0.851 32 H 0.143 0.857 33 H 0.127 0.873 34 H 0.076 0.924 35 H 0.084 0.916 36 H 0.096 0.904 37 H 0.101 0.899 38 H 0.058 0.942 39 H 0.019 0.981 40 H 0.092 0.908 41 H 0.342 0.658 42 H 0.069 0.931 43 H 0.120 0.880 44 H 0.390 0.610 45 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.522 11.132 -34.888 38.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.304 4.304 3 C -0.183 4.183 4 C -0.163 4.163 5 C -0.293 4.293 6 C -0.102 4.102 7 C 0.294 3.706 8 O -0.457 6.457 9 N -0.345 5.345 10 C -0.075 4.075 11 C -0.002 4.002 12 C -0.074 4.074 13 N -0.312 5.312 14 C -0.069 4.069 15 C 0.236 3.764 16 O -0.498 6.498 17 N -0.231 5.231 18 C -0.460 4.460 19 H 0.074 0.926 20 C -0.214 4.214 21 N -0.573 5.573 22 Si 0.786 3.214 23 H -0.178 1.178 24 H -0.199 1.199 25 H -0.157 1.157 26 S 0.341 5.659 27 H 0.107 0.893 28 H 0.087 0.913 29 H 0.105 0.895 30 H 0.172 0.828 31 H 0.167 0.833 32 H 0.161 0.839 33 H 0.145 0.855 34 H 0.094 0.906 35 H 0.103 0.897 36 H 0.115 0.885 37 H 0.119 0.881 38 H 0.077 0.923 39 H 0.037 0.963 40 H 0.111 0.889 41 H 0.160 0.840 42 H 0.087 0.913 43 H 0.138 0.862 44 H 0.226 0.774 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -11.129 10.057 -34.070 37.226 hybrid contribution -0.833 0.764 0.897 1.443 sum -11.962 10.821 -33.173 36.887 Atomic orbital electron populations 1.20433 0.86250 1.03762 1.03737 1.24845 1.01160 0.95198 1.09163 1.20310 0.92938 1.00065 1.04939 1.20292 0.96913 0.96144 1.02993 1.24009 0.97854 0.96669 1.10742 1.20282 0.91085 1.05520 0.93287 1.21167 0.81185 0.76193 0.92077 1.90739 1.55375 1.51703 1.47841 1.47919 1.14341 1.64622 1.07584 1.22202 0.94467 1.02501 0.88361 1.21237 1.00987 0.95622 0.82370 1.22257 0.97383 0.98609 0.89124 1.60059 1.64430 1.03254 1.03424 1.21622 1.00075 0.93563 0.91653 1.20914 0.83324 0.82723 0.89468 1.90544 1.47393 1.40682 1.71162 1.42018 1.54287 1.14102 1.12701 1.19016 1.36937 1.00837 0.89173 0.92649 1.26139 0.98013 1.01100 0.96171 1.69807 1.47103 1.28548 1.11861 0.85350 0.79352 0.77603 0.79117 1.17836 1.19933 1.15734 1.84213 0.97489 1.10628 1.73558 0.89297 0.91318 0.89471 0.82795 0.83300 0.83920 0.85461 0.90559 0.89707 0.88547 0.88065 0.92339 0.96250 0.88940 0.83970 0.91313 0.86202 0.77447 0.91079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.95 10.38 71.23 0.74 -0.21 16 2 C -0.19 -3.19 6.51 24.59 0.16 -3.03 16 3 C -0.15 -2.57 10.05 21.22 0.21 -2.36 16 4 C -0.13 -2.32 10.05 21.22 0.21 -2.10 16 5 C -0.18 -3.10 5.00 24.59 0.12 -2.98 16 6 C -0.06 -0.73 4.75 29.10 0.14 -0.60 16 7 C 0.51 10.16 7.67 87.65 0.67 10.83 16 8 O -0.58 -17.83 15.62 -3.04 -0.05 -17.88 16 9 N -0.61 -9.78 2.87 -846.78 -2.43 -12.21 16 10 C 0.07 0.41 10.24 127.77 1.31 1.72 16 11 C 0.12 2.56 5.67 86.38 0.49 3.05 16 12 C 0.06 1.31 6.01 86.30 0.52 1.83 16 13 N -0.68 -21.20 6.13 -517.95 -3.17 -24.37 16 14 C 0.06 2.04 6.17 85.56 0.53 2.57 16 15 C 0.45 20.91 7.82 87.66 0.69 21.60 16 16 O -0.61 -35.00 15.78 -3.07 -0.05 -35.05 16 17 N -0.59 -28.52 5.09 -306.98 -1.56 -30.08 16 18 C -0.33 -19.74 10.16 84.04 0.85 -18.89 16 19 H 0.06 3.93 7.39 -2.91 -0.02 3.91 16 20 C -0.02 -0.87 5.50 84.93 0.47 -0.41 16 21 N -0.93 -56.86 13.96 21.66 0.30 -56.55 16 22 Si 0.97 39.31 27.74 68.60 1.90 41.21 16 23 H -0.25 -9.71 7.11 99.48 0.71 -9.00 16 24 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 25 H -0.23 -8.10 6.52 99.48 0.65 -7.45 16 26 S 0.08 1.44 23.31 -56.49 -1.32 0.12 16 27 H 0.09 0.74 8.14 -2.38 -0.02 0.72 16 28 H 0.07 0.78 8.14 -2.39 -0.02 0.77 16 29 H 0.09 0.81 8.14 -2.38 -0.02 0.79 16 30 H 0.15 1.92 8.06 -2.91 -0.02 1.90 16 31 H 0.15 2.06 8.06 -2.91 -0.02 2.04 16 32 H 0.14 0.81 8.11 -2.39 -0.02 0.79 16 33 H 0.13 0.92 7.40 -2.39 -0.02 0.90 16 34 H 0.08 0.28 8.14 -2.39 -0.02 0.26 16 35 H 0.08 0.47 8.07 -2.39 -0.02 0.45 16 36 H 0.10 0.15 6.44 -2.38 -0.02 0.14 16 37 H 0.10 1.89 8.07 -2.39 -0.02 1.87 16 38 H 0.06 1.56 7.42 -2.39 -0.02 1.54 16 39 H 0.02 0.50 8.14 -2.39 -0.02 0.48 16 40 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 41 H 0.34 11.90 8.43 -89.69 -0.76 11.14 16 42 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 43 H 0.12 3.15 8.14 -2.39 -0.02 3.13 16 44 H 0.39 15.61 5.76 -92.70 -0.53 15.07 16 45 H 0.28 15.54 8.31 -92.70 -0.77 14.77 16 Total: -1.00 -86.65 393.85 0.40 -86.25 By element: Atomic # 1 Polarization: 37.87 SS G_CDS: -0.33 Total: 37.54 kcal Atomic # 6 Polarization: 3.92 SS G_CDS: 7.11 Total: 11.03 kcal Atomic # 7 Polarization: -116.35 SS G_CDS: -6.87 Total: -123.22 kcal Atomic # 8 Polarization: -52.83 SS G_CDS: -0.10 Total: -52.93 kcal Atomic # 14 Polarization: 39.31 SS G_CDS: 1.90 Total: 41.21 kcal Atomic # 16 Polarization: 1.44 SS G_CDS: -1.32 Total: 0.12 kcal Total: -86.65 0.40 -86.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753265568.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.767 kcal (2) G-P(sol) polarization free energy of solvation -86.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds