Wall clock time and date at job start Sat Apr 11 2020 05:40:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.32774 * 124.71079 * 2 1 4 4 C 1.44421 * 113.08547 * 180.02562 * 3 2 1 5 5 C 1.47183 * 123.46447 * 180.02562 * 4 3 2 6 6 O 1.21636 * 120.00492 * 180.02562 * 5 4 3 7 7 N 1.34780 * 120.00063 * 0.02562 * 5 4 3 8 8 C 1.46493 * 120.00255 * 179.97438 * 7 5 4 9 9 H 1.08996 * 109.47381 * 325.00290 * 8 7 5 10 10 C 1.53005 * 109.47110 * 85.00301 * 8 7 5 11 11 C 1.53004 * 109.47175 * 205.00076 * 8 7 5 12 12 N 1.46896 * 109.46971 * 55.00788 * 11 8 7 13 13 C 1.46902 * 110.99753 * 180.02562 * 12 11 8 14 14 C 1.50706 * 109.46761 * 179.97438 * 13 12 11 15 15 O 1.21290 * 120.00073 * 359.97438 * 14 13 12 16 16 N 1.34777 * 119.99721 * 179.97438 * 14 13 12 17 17 C 1.37089 * 119.99896 * 179.97438 * 16 14 13 18 18 H 1.07999 * 119.99994 * 0.02562 * 17 16 14 19 19 C 1.38956 * 120.00093 * 179.97438 * 17 16 14 20 20 N 1.31406 * 119.99746 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 120.00024 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.47288 * 359.97438 * 21 19 17 23 23 H 1.48499 * 109.47188 * 119.99836 * 21 19 17 24 24 H 1.48503 * 109.46889 * 239.99938 * 21 19 17 25 25 C 1.36013 * 113.07665 * 359.97438 * 4 3 2 26 26 C 1.50702 * 124.59271 * 179.97438 * 25 4 3 27 27 S 1.70444 * 110.81665 * 0.02562 * 25 4 3 28 28 H 1.08998 * 109.46992 * 89.99990 * 1 2 3 29 29 H 1.09000 * 109.47095 * 210.00186 * 1 2 3 30 30 H 1.09006 * 109.47264 * 329.99538 * 1 2 3 31 31 H 1.07997 * 123.45706 * 359.73314 * 3 2 1 32 32 H 0.97000 * 119.99454 * 0.02562 * 7 5 4 33 33 H 1.08996 * 109.47565 * 179.97438 * 10 8 7 34 34 H 1.09000 * 109.47260 * 300.00602 * 10 8 7 35 35 H 1.09004 * 109.46784 * 59.99970 * 10 8 7 36 36 H 1.09007 * 109.46656 * 175.00442 * 11 8 7 37 37 H 1.09005 * 109.46994 * 295.00158 * 11 8 7 38 38 H 1.00907 * 110.99430 * 303.95005 * 12 11 8 39 39 H 1.09000 * 109.46710 * 299.99186 * 13 12 11 40 40 H 1.08991 * 109.47751 * 59.99467 * 13 12 11 41 41 H 0.97002 * 120.00225 * 359.97438 * 16 14 13 42 42 H 0.96998 * 120.00101 * 180.02562 * 20 19 17 43 43 H 1.08993 * 109.47147 * 180.02562 * 26 25 4 44 44 H 1.08996 * 109.47033 * 300.03300 * 26 25 4 45 45 H 1.09007 * 109.46581 * 60.03210 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2631 1.0915 0.0000 4 6 3.6776 0.8004 -0.0006 5 6 4.7200 1.8395 -0.0002 6 8 5.8945 1.5230 -0.0012 7 7 4.3732 3.1420 0.0014 8 6 5.4107 4.1762 0.0024 9 1 6.2624 3.8360 0.5912 10 6 5.8603 4.4489 -1.4345 11 6 4.8489 5.4615 0.6135 12 7 4.3082 5.1732 1.9486 13 6 3.7583 6.3868 2.5672 14 6 3.2137 6.0524 3.9320 15 8 3.2769 4.9149 4.3481 16 7 2.6563 7.0173 4.6901 17 6 2.1603 6.7130 5.9314 18 1 2.2166 5.7001 6.3019 19 6 1.5862 7.7079 6.7132 20 7 1.5181 8.9404 6.2625 21 14 0.9110 7.2934 8.4049 22 1 1.1074 5.8465 8.6754 23 1 1.6269 8.0912 9.4327 24 1 -0.5385 7.6129 8.4513 25 6 3.9477 -0.5326 -0.0005 26 6 5.3334 -1.1249 -0.0016 27 16 2.5065 -1.4426 -0.0004 28 1 -0.3633 0.0000 -1.0276 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3634 0.8900 0.5139 31 1 1.8614 2.0940 -0.0042 32 1 3.4367 3.3944 0.0025 33 1 6.6319 5.2188 -1.4339 34 1 6.2604 3.5333 -1.8700 35 1 5.0085 4.7893 -2.0233 36 1 5.6443 6.2024 0.6959 37 1 4.0548 5.8502 -0.0241 38 1 3.6138 4.4422 1.9072 39 1 4.5457 7.1344 2.6631 40 1 2.9566 6.7815 1.9431 41 1 2.6060 7.9271 4.3574 42 1 1.1177 9.6350 6.8084 43 1 5.2637 -2.2126 -0.0017 44 1 5.8688 -0.7950 -0.8918 45 1 5.8700 -0.7953 0.8882 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754274500.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:07 Heat of formation + Delta-G solvation = -54.474675 kcal Electronic energy + Delta-G solvation = -26554.336418 eV Core-core repulsion = 22697.817304 eV Total energy + Delta-G solvation = -3856.519114 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.14962 -38.37183 -37.56697 -36.51807 -34.29728 -33.66644 -33.15429 -31.38143 -31.15894 -29.34427 -27.60205 -25.70070 -25.00643 -24.02672 -23.19466 -21.31469 -20.71716 -19.46052 -19.16225 -17.90324 -17.41091 -16.91033 -16.14618 -15.99927 -15.37187 -15.16331 -14.67763 -14.52186 -14.41645 -14.05951 -13.93426 -13.84484 -13.56014 -13.38246 -13.30886 -13.13935 -13.05190 -12.63651 -12.43999 -12.16574 -11.94605 -11.80706 -11.75036 -11.69821 -11.61655 -11.47058 -11.13648 -11.08778 -10.96850 -10.34962 -10.23334 -9.83207 -9.52998 -9.16381 -8.80745 -8.56440 -8.47237 -8.09212 -7.97036 -6.42893 -3.83539 0.64010 1.26177 1.68214 1.81883 3.15579 3.18844 3.26295 3.33789 3.35149 3.89485 4.05215 4.27927 4.41113 4.64411 4.78483 4.92673 4.99777 5.01544 5.14557 5.18664 5.22342 5.25660 5.27466 5.36500 5.43629 5.52955 5.57021 5.59035 5.63081 5.75009 5.77666 5.82611 5.93938 5.97006 6.01359 6.09523 6.14633 6.25062 6.47154 7.14925 7.46144 7.54594 7.59619 8.05562 8.22172 8.60296 9.17161 9.53233 10.04785 10.74972 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010870 B = 0.002585 C = 0.002241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2575.193703 B =10830.702977 C =12493.835097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.201 4.201 3 C -0.108 4.108 4 C -0.170 4.170 5 C 0.585 3.415 6 O -0.537 6.537 7 N -0.717 5.717 8 C 0.146 3.854 9 H 0.099 0.901 10 C -0.161 4.161 11 C 0.050 3.950 12 N -0.667 5.667 13 C 0.050 3.950 14 C 0.440 3.560 15 O -0.581 6.581 16 N -0.564 5.564 17 C -0.298 4.298 18 H 0.103 0.897 19 C 0.022 3.978 20 N -0.902 5.902 21 Si 0.929 3.071 22 H -0.268 1.268 23 H -0.281 1.281 24 H -0.282 1.282 25 C -0.142 4.142 26 C -0.078 4.078 27 S 0.175 5.825 28 H 0.074 0.926 29 H 0.069 0.931 30 H 0.080 0.920 31 H 0.146 0.854 32 H 0.396 0.604 33 H 0.067 0.933 34 H 0.062 0.938 35 H 0.055 0.945 36 H 0.088 0.912 37 H 0.032 0.968 38 H 0.348 0.652 39 H 0.087 0.913 40 H 0.043 0.957 41 H 0.392 0.608 42 H 0.271 0.729 43 H 0.061 0.939 44 H 0.085 0.915 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.962 -13.917 -19.082 23.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.317 4.317 3 C -0.137 4.137 4 C -0.187 4.187 5 C 0.372 3.628 6 O -0.416 6.416 7 N -0.369 5.369 8 C 0.041 3.959 9 H 0.117 0.883 10 C -0.220 4.220 11 C -0.080 4.080 12 N -0.300 5.300 13 C -0.083 4.083 14 C 0.225 3.775 15 O -0.465 6.465 16 N -0.201 5.201 17 C -0.428 4.428 18 H 0.121 0.879 19 C -0.180 4.180 20 N -0.544 5.544 21 Si 0.756 3.244 22 H -0.192 1.192 23 H -0.207 1.207 24 H -0.208 1.208 25 C -0.263 4.263 26 C -0.136 4.136 27 S 0.441 5.559 28 H 0.092 0.908 29 H 0.088 0.912 30 H 0.098 0.902 31 H 0.163 0.837 32 H 0.230 0.770 33 H 0.086 0.914 34 H 0.081 0.919 35 H 0.074 0.926 36 H 0.106 0.894 37 H 0.050 0.950 38 H 0.167 0.833 39 H 0.106 0.894 40 H 0.061 0.939 41 H 0.225 0.775 42 H 0.081 0.919 43 H 0.080 0.920 44 H 0.104 0.896 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 2.053 -16.202 -18.379 24.587 hybrid contribution -1.406 2.491 0.220 2.869 sum 0.648 -13.711 -18.160 22.764 Atomic orbital electron populations 1.20355 0.87428 1.03600 1.02753 1.24250 1.00396 0.95996 1.11089 1.21096 0.91009 0.99380 1.02224 1.20084 0.93368 0.92986 1.12257 1.17465 0.87708 0.81935 0.75708 1.90759 1.18670 1.82005 1.50154 1.45846 1.10048 1.05500 1.75483 1.21036 0.91751 0.86778 0.96342 0.88326 1.22148 1.01456 1.02329 0.96021 1.22313 0.99710 0.96431 0.89527 1.60020 1.41754 1.08998 1.19204 1.21698 0.98549 0.92886 0.95158 1.19807 0.84196 0.86408 0.87064 1.90538 1.61289 1.20920 1.73776 1.41865 1.52181 1.10082 1.15941 1.19756 1.34352 0.96972 0.91718 0.87883 1.25260 0.97733 0.94797 1.00166 1.69616 1.45351 1.00867 1.38524 0.85807 0.78271 0.78868 0.81452 1.19196 1.20716 1.20771 1.24472 1.01783 0.96707 1.03305 1.20400 0.89627 0.98830 1.04751 1.82975 0.93343 1.08568 1.71007 0.90759 0.91203 0.90160 0.83673 0.76970 0.91382 0.91890 0.92614 0.89410 0.95037 0.83252 0.89441 0.93891 0.77478 0.91926 0.91996 0.89650 0.89365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.59 10.35 36.01 0.37 -0.22 16 2 C -0.20 -1.94 6.44 -36.18 -0.23 -2.17 16 3 C -0.11 -1.15 9.75 -39.02 -0.38 -1.54 16 4 C -0.17 -2.13 5.98 -104.63 -0.63 -2.76 16 5 C 0.59 8.13 7.75 -12.63 -0.10 8.03 16 6 O -0.54 -8.77 14.31 5.25 0.08 -8.69 16 7 N -0.72 -8.48 4.34 -54.96 -0.24 -8.72 16 8 C 0.15 1.70 2.88 -67.93 -0.20 1.50 16 9 H 0.10 1.40 7.58 -51.93 -0.39 1.01 16 10 C -0.16 -1.53 9.48 37.16 0.35 -1.18 16 11 C 0.05 0.59 5.30 -3.82 -0.02 0.57 16 12 N -0.67 -10.67 6.12 -115.05 -0.70 -11.38 16 13 C 0.05 0.86 6.17 -4.97 -0.03 0.83 16 14 C 0.44 10.39 7.82 -10.98 -0.09 10.30 16 15 O -0.58 -15.95 15.78 5.55 0.09 -15.86 16 16 N -0.56 -14.26 5.29 -10.96 -0.06 -14.32 16 17 C -0.30 -8.34 9.68 -14.93 -0.14 -8.49 16 18 H 0.10 3.04 7.16 -52.49 -0.38 2.67 16 19 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 20 N -0.90 -24.50 13.05 55.50 0.72 -23.77 16 21 Si 0.93 21.07 29.55 -169.99 -5.02 16.05 16 22 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 23 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 24 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 25 C -0.14 -1.65 6.34 -35.11 -0.22 -1.87 16 26 C -0.08 -0.82 8.77 36.01 0.32 -0.50 16 27 S 0.17 1.62 22.93 -107.50 -2.46 -0.84 16 28 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.15 1.28 7.10 -52.49 -0.37 0.91 16 32 H 0.40 3.99 6.69 -40.82 -0.27 3.72 16 33 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.09 0.96 8.14 -51.92 -0.42 0.53 16 37 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 38 H 0.35 5.76 7.28 -39.29 -0.29 5.47 16 39 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 40 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 41 H 0.39 9.44 7.90 -40.82 -0.32 9.12 16 42 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 43 H 0.06 0.50 8.11 -51.93 -0.42 0.08 16 44 H 0.08 0.93 7.78 -51.93 -0.40 0.52 16 45 H 0.09 1.05 7.78 -51.93 -0.40 0.65 16 LS Contribution 392.00 15.07 5.91 5.91 Total: -1.00 -33.67 392.00 -9.40 -43.07 By element: Atomic # 1 Polarization: 22.17 SS G_CDS: -6.62 Total: 15.55 kcal Atomic # 6 Polarization: 4.10 SS G_CDS: -1.09 Total: 3.01 kcal Atomic # 7 Polarization: -57.91 SS G_CDS: -0.28 Total: -58.19 kcal Atomic # 8 Polarization: -24.71 SS G_CDS: 0.16 Total: -24.55 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Atomic # 16 Polarization: 1.62 SS G_CDS: -2.46 Total: -0.84 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -33.67 -9.40 -43.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754274500.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.403 kcal (2) G-P(sol) polarization free energy of solvation -33.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds