Wall clock time and date at job start Sat Apr 11 2020 05:40:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.32774 * 124.71079 * 2 1 4 4 C 1.44421 * 113.08547 * 180.02562 * 3 2 1 5 5 C 1.47183 * 123.46447 * 180.02562 * 4 3 2 6 6 O 1.21636 * 120.00492 * 180.02562 * 5 4 3 7 7 N 1.34780 * 120.00063 * 0.02562 * 5 4 3 8 8 C 1.46493 * 120.00255 * 179.97438 * 7 5 4 9 9 H 1.08996 * 109.47381 * 325.00290 * 8 7 5 10 10 C 1.53005 * 109.47110 * 85.00301 * 8 7 5 11 11 C 1.53004 * 109.47175 * 205.00076 * 8 7 5 12 12 N 1.46896 * 109.46971 * 55.00788 * 11 8 7 13 13 C 1.46902 * 110.99753 * 180.02562 * 12 11 8 14 14 C 1.50706 * 109.46761 * 179.97438 * 13 12 11 15 15 O 1.21290 * 120.00073 * 359.97438 * 14 13 12 16 16 N 1.34777 * 119.99721 * 179.97438 * 14 13 12 17 17 C 1.37089 * 119.99896 * 179.97438 * 16 14 13 18 18 H 1.07999 * 119.99994 * 0.02562 * 17 16 14 19 19 C 1.38956 * 120.00093 * 179.97438 * 17 16 14 20 20 N 1.31406 * 119.99746 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 120.00024 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.47288 * 359.97438 * 21 19 17 23 23 H 1.48499 * 109.47188 * 119.99836 * 21 19 17 24 24 H 1.48503 * 109.46889 * 239.99938 * 21 19 17 25 25 C 1.36013 * 113.07665 * 359.97438 * 4 3 2 26 26 C 1.50702 * 124.59271 * 179.97438 * 25 4 3 27 27 S 1.70444 * 110.81665 * 0.02562 * 25 4 3 28 28 H 1.08998 * 109.46992 * 89.99990 * 1 2 3 29 29 H 1.09000 * 109.47095 * 210.00186 * 1 2 3 30 30 H 1.09006 * 109.47264 * 329.99538 * 1 2 3 31 31 H 1.07997 * 123.45706 * 359.73314 * 3 2 1 32 32 H 0.97000 * 119.99454 * 0.02562 * 7 5 4 33 33 H 1.08996 * 109.47565 * 179.97438 * 10 8 7 34 34 H 1.09000 * 109.47260 * 300.00602 * 10 8 7 35 35 H 1.09004 * 109.46784 * 59.99970 * 10 8 7 36 36 H 1.09007 * 109.46656 * 175.00442 * 11 8 7 37 37 H 1.09005 * 109.46994 * 295.00158 * 11 8 7 38 38 H 1.00907 * 110.99430 * 303.95005 * 12 11 8 39 39 H 1.09000 * 109.46710 * 299.99186 * 13 12 11 40 40 H 1.08991 * 109.47751 * 59.99467 * 13 12 11 41 41 H 0.97002 * 120.00225 * 359.97438 * 16 14 13 42 42 H 0.96998 * 120.00101 * 180.02562 * 20 19 17 43 43 H 1.08993 * 109.47147 * 180.02562 * 26 25 4 44 44 H 1.08996 * 109.47033 * 300.03300 * 26 25 4 45 45 H 1.09007 * 109.46581 * 60.03210 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2631 1.0915 0.0000 4 6 3.6776 0.8004 -0.0006 5 6 4.7200 1.8395 -0.0002 6 8 5.8945 1.5230 -0.0012 7 7 4.3732 3.1420 0.0014 8 6 5.4107 4.1762 0.0024 9 1 6.2624 3.8360 0.5912 10 6 5.8603 4.4489 -1.4345 11 6 4.8489 5.4615 0.6135 12 7 4.3082 5.1732 1.9486 13 6 3.7583 6.3868 2.5672 14 6 3.2137 6.0524 3.9320 15 8 3.2769 4.9149 4.3481 16 7 2.6563 7.0173 4.6901 17 6 2.1603 6.7130 5.9314 18 1 2.2166 5.7001 6.3019 19 6 1.5862 7.7079 6.7132 20 7 1.5181 8.9404 6.2625 21 14 0.9110 7.2934 8.4049 22 1 1.1074 5.8465 8.6754 23 1 1.6269 8.0912 9.4327 24 1 -0.5385 7.6129 8.4513 25 6 3.9477 -0.5326 -0.0005 26 6 5.3334 -1.1249 -0.0016 27 16 2.5065 -1.4426 -0.0004 28 1 -0.3633 0.0000 -1.0276 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3634 0.8900 0.5139 31 1 1.8614 2.0940 -0.0042 32 1 3.4367 3.3944 0.0025 33 1 6.6319 5.2188 -1.4339 34 1 6.2604 3.5333 -1.8700 35 1 5.0085 4.7893 -2.0233 36 1 5.6443 6.2024 0.6959 37 1 4.0548 5.8502 -0.0241 38 1 3.6138 4.4422 1.9072 39 1 4.5457 7.1344 2.6631 40 1 2.9566 6.7815 1.9431 41 1 2.6060 7.9271 4.3574 42 1 1.1177 9.6350 6.8084 43 1 5.2637 -2.2126 -0.0017 44 1 5.8688 -0.7950 -0.8918 45 1 5.8700 -0.7953 0.8882 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754274500.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:06 Heat of formation + Delta-G solvation = -78.727770 kcal Electronic energy + Delta-G solvation = -26555.388111 eV Core-core repulsion = 22697.817304 eV Total energy + Delta-G solvation = -3857.570807 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.15019 -40.15201 -38.52130 -37.62317 -36.04379 -35.13278 -33.94749 -33.26762 -32.28223 -30.10070 -28.98395 -26.77575 -26.40758 -25.00106 -24.47381 -22.19979 -21.68318 -21.08457 -20.25375 -19.89734 -18.29901 -18.07450 -17.43228 -17.14328 -16.77631 -16.37118 -16.24027 -15.94944 -15.49988 -15.37128 -15.18125 -14.79500 -14.72859 -14.34302 -14.18389 -14.14995 -14.01036 -13.85316 -13.56084 -13.33421 -13.10226 -13.03802 -12.89208 -12.80657 -12.66221 -12.57025 -12.51320 -12.40930 -12.12425 -11.95135 -11.88808 -11.52159 -10.87564 -10.37884 -10.14148 -10.01881 -9.58338 -9.36635 -9.32831 -8.47570 -5.96002 -0.22357 0.48972 0.88503 0.95884 1.35878 1.41472 1.55448 2.04857 2.23439 2.29021 2.36604 2.88960 3.19976 3.49185 3.64087 3.78034 3.87152 4.11982 4.18687 4.23673 4.27206 4.37008 4.49631 4.51282 4.58620 4.60122 4.63894 4.67011 4.74129 4.76389 4.78416 4.86319 5.03439 5.08857 5.14868 5.16279 5.26918 5.38370 5.40658 5.52782 5.86443 6.08577 6.34902 6.50974 6.59895 7.12519 7.21857 7.55968 8.11814 8.70032 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010870 B = 0.002585 C = 0.002241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2575.193703 B =10830.702977 C =12493.835097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.204 4.204 3 C -0.123 4.123 4 C -0.193 4.193 5 C 0.577 3.423 6 O -0.573 6.573 7 N -0.709 5.709 8 C 0.147 3.853 9 H 0.067 0.933 10 C -0.151 4.151 11 C 0.057 3.943 12 N -0.688 5.688 13 C 0.065 3.935 14 C 0.436 3.564 15 O -0.625 6.625 16 N -0.572 5.572 17 C -0.333 4.333 18 H 0.076 0.924 19 C -0.011 4.011 20 N -0.919 5.919 21 Si 0.991 3.009 22 H -0.275 1.275 23 H -0.271 1.271 24 H -0.269 1.269 25 C -0.166 4.166 26 C -0.074 4.074 27 S 0.219 5.781 28 H 0.091 0.909 29 H 0.079 0.921 30 H 0.082 0.918 31 H 0.159 0.841 32 H 0.405 0.595 33 H 0.084 0.916 34 H 0.045 0.955 35 H 0.072 0.928 36 H 0.101 0.899 37 H 0.060 0.940 38 H 0.342 0.658 39 H 0.107 0.893 40 H 0.074 0.926 41 H 0.397 0.603 42 H 0.278 0.722 43 H 0.086 0.914 44 H 0.077 0.923 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.442 -13.377 -20.030 24.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.321 4.321 3 C -0.151 4.151 4 C -0.210 4.210 5 C 0.365 3.635 6 O -0.454 6.454 7 N -0.361 5.361 8 C 0.042 3.958 9 H 0.085 0.915 10 C -0.209 4.209 11 C -0.072 4.072 12 N -0.321 5.321 13 C -0.067 4.067 14 C 0.223 3.777 15 O -0.512 6.512 16 N -0.209 5.209 17 C -0.463 4.463 18 H 0.094 0.906 19 C -0.211 4.211 20 N -0.560 5.560 21 Si 0.815 3.185 22 H -0.200 1.200 23 H -0.197 1.197 24 H -0.194 1.194 25 C -0.286 4.286 26 C -0.132 4.132 27 S 0.486 5.514 28 H 0.109 0.891 29 H 0.098 0.902 30 H 0.101 0.899 31 H 0.176 0.824 32 H 0.241 0.759 33 H 0.103 0.897 34 H 0.064 0.936 35 H 0.091 0.909 36 H 0.119 0.881 37 H 0.078 0.922 38 H 0.161 0.839 39 H 0.125 0.875 40 H 0.091 0.909 41 H 0.231 0.769 42 H 0.087 0.913 43 H 0.105 0.895 44 H 0.095 0.905 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 0.635 -15.616 -19.358 24.880 hybrid contribution -0.968 2.271 0.485 2.516 sum -0.333 -13.345 -18.873 23.117 Atomic orbital electron populations 1.20467 0.85518 1.04196 1.04024 1.24680 1.01781 0.95918 1.09718 1.21222 0.90192 1.00532 1.03178 1.20207 0.94009 0.93083 1.13703 1.17808 0.87646 0.82796 0.75273 1.90728 1.20066 1.82605 1.52011 1.45812 1.10660 1.05027 1.74577 1.21015 0.90756 0.86648 0.97354 0.91474 1.22055 1.02505 1.02071 0.94293 1.22373 1.00669 0.96510 0.87693 1.59993 1.41669 1.08460 1.21975 1.21561 0.99828 0.93764 0.91562 1.20945 0.82528 0.85328 0.88866 1.90508 1.62574 1.22761 1.75331 1.41920 1.52721 1.10680 1.15622 1.19676 1.36664 0.96333 0.93618 0.90564 1.26007 0.97304 0.94522 1.03295 1.69666 1.45264 1.01358 1.39744 0.84901 0.78213 0.78188 0.77223 1.19959 1.19665 1.19383 1.24772 1.03209 0.97178 1.03441 1.20342 0.89202 1.00261 1.03393 1.82747 0.91499 1.07535 1.69627 0.89072 0.90224 0.89947 0.82384 0.75874 0.89724 0.93571 0.90872 0.88071 0.92227 0.83917 0.87538 0.90858 0.76882 0.91269 0.89539 0.90456 0.91365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.02 10.35 71.24 0.74 -0.28 16 2 C -0.20 -3.66 6.44 24.51 0.16 -3.50 16 3 C -0.12 -2.56 9.75 22.67 0.22 -2.34 16 4 C -0.19 -4.92 5.98 -19.87 -0.12 -5.04 16 5 C 0.58 16.66 7.75 86.59 0.67 17.33 16 6 O -0.57 -19.83 14.31 -4.15 -0.06 -19.89 16 7 N -0.71 -16.76 4.34 -446.03 -1.93 -18.70 16 8 C 0.15 3.35 2.88 45.00 0.13 3.48 16 9 H 0.07 1.97 7.58 -2.39 -0.02 1.96 16 10 C -0.15 -2.66 9.48 71.98 0.68 -1.98 16 11 C 0.06 1.19 5.30 86.31 0.46 1.65 16 12 N -0.69 -21.22 6.12 -517.91 -3.17 -24.39 16 13 C 0.07 2.13 6.17 85.56 0.53 2.66 16 14 C 0.44 20.63 7.82 87.66 0.69 21.31 16 15 O -0.63 -35.12 15.78 -3.06 -0.05 -35.16 16 16 N -0.57 -29.14 5.29 -306.98 -1.62 -30.76 16 17 C -0.33 -18.96 9.68 84.04 0.81 -18.15 16 18 H 0.08 4.67 7.16 -2.91 -0.02 4.65 16 19 C -0.01 -0.61 5.50 84.93 0.47 -0.14 16 20 N -0.92 -49.22 13.05 21.66 0.28 -48.94 16 21 Si 0.99 42.91 29.55 68.60 2.03 44.93 16 22 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 23 H -0.27 -11.28 7.11 99.48 0.71 -10.58 16 24 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 25 C -0.17 -3.87 6.34 25.17 0.16 -3.71 16 26 C -0.07 -1.62 8.77 71.24 0.62 -0.99 16 27 S 0.22 3.81 22.93 -56.49 -1.30 2.51 16 28 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.08 0.99 8.14 -2.38 -0.02 0.97 16 31 H 0.16 2.67 7.10 -2.91 -0.02 2.65 16 32 H 0.41 7.90 6.69 -92.71 -0.62 7.28 16 33 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 35 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.10 1.91 8.14 -2.38 -0.02 1.89 16 37 H 0.06 0.98 8.14 -2.38 -0.02 0.96 16 38 H 0.34 11.15 7.28 -89.69 -0.65 10.50 16 39 H 0.11 3.13 8.14 -2.39 -0.02 3.11 16 40 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 41 H 0.40 19.03 7.90 -92.71 -0.73 18.30 16 42 H 0.28 13.87 8.31 -92.71 -0.77 13.10 16 43 H 0.09 1.38 8.11 -2.39 -0.02 1.36 16 44 H 0.08 1.79 7.78 -2.39 -0.02 1.77 16 45 H 0.07 1.75 7.78 -2.38 -0.02 1.74 16 Total: -1.00 -74.84 392.00 -0.57 -75.41 By element: Atomic # 1 Polarization: 45.66 SS G_CDS: -0.97 Total: 44.69 kcal Atomic # 6 Polarization: 4.07 SS G_CDS: 6.22 Total: 10.29 kcal Atomic # 7 Polarization: -116.34 SS G_CDS: -6.44 Total: -122.78 kcal Atomic # 8 Polarization: -54.94 SS G_CDS: -0.11 Total: -55.05 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 2.03 Total: 44.93 kcal Atomic # 16 Polarization: 3.81 SS G_CDS: -1.30 Total: 2.51 kcal Total: -74.84 -0.57 -75.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754274500.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.317 kcal (2) G-P(sol) polarization free energy of solvation -74.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds